mRNA_S-dermatodea_contig1244.1520.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1244.1520.1
Unique NamemRNA_S-dermatodea_contig1244.1520.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1244.1520.1 vs. uniprot
Match: D7FNY5_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY5_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 5.340e-27
Identity = 223/437 (51.03%), Postives = 260/437 (59.50%), Query Frame = 1 
Query:   22 IDIHEAAGEGRMNDVRAYLKGGGLIDKRDADRWTPLMMAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYKDAEGSTSGDVLGKDLSEDAREIVRALLREHEKMMQSTKQRRGSCPAIPRTVLTSAVNATFSATP-------------AQETTPPDSGVALGPLLPVTVV-KGAVDHTAETEHVGGGNDTANAGSADSSQATGSGQHIRLSFSAAPHIREHSRKQQQRTDSXXXXXXXXXXPASAQQAPAGEESPIPTTALPTSPIRGQAPRASGSDHETVGGTKAHDIGTCSGETDLGEGESRDGDTGGV-EASHXXXXXXXXXXXXXXXXXXXXXXXXXXXRAREAEASYAKEEELRRREETRVQILEQRVVELEKALA 1287
            IDIHEAA +G + +VRA+LK GG+IDKRD DRWTPLM++V XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AEG T GDV+G DLSED+REIVR LL+EH   +++TKQRRGSCPAIPRT++ +AV+AT + T              +  T P     AL PL  V V  K A +  AET   G          A+S+QA G     R+SFSAA  IR+HS     +             PA+A    A E S  P T L TS + G   RA+ +  +T G  +A D   C   T  G   +     GGV   +                            R R +E S ++ EE R REE R Q     V ELEK L+
Sbjct:    6 IDIHEAARDGNLAEVRAFLKAGGIIDKRDPDRWTPLMLSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGKTPGDVVGSDLSEDSREIVRTLLKEHAARVKNTKQRRGSCPAIPRTLMATAVHATGTGTMNGASVAAAAPLLLSSPTAPSHKPGALLPLPSVVVTNKNAGEIDAETAVHG----------ANSNQAGGQATR-RISFSAADRIRDHS--PMGKNQGRCAEISSAAAPATAT---AEETSVSPVTPLTTSVV-GSPSRATSTPGQTPG--RASDPKNCVPTT--GGATTMTDTAGGVGSTAEDQDKGCRDNKNDSEVFALRQALKAAEERGRASENSLSQLEERRLREEARAQXXXXXVAELEKMLS 421
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BLAST of mRNA_S-dermatodea_contig1244.1520.1 vs. uniprot
Match: A0A6H5K0I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I9_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.420e-25
Identity = 200/470 (42.55%), Postives = 249/470 (52.98%), Query Frame = 1 
Query:   22 IDIHEAAGEGRMNDVRAYLKGGGLIDKRDADRWTPLMMAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------NYKDAEGSTSGDVLGKDLSEDAREIVRALLREHEKMMQSTKQRRGSCPAIPRTVLTSAVNATFSATPAQETTPPDSGVAL----------GPLLPVTVV----KGAVDHTAETEHVGGGNDTANAGSADSSQATGSG-QHIRLSFSAAPHIREHSRKQQQRTDSXXXXXXXXXXPASAQQAPAGEESPIPTTALPTSPIR-----GQAPRASGSDHETVGGTKAHDIGTCSGETDLGEGESRDGDTGGVEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXRAREAEASYAKEEELRRREETRVQILEQRVVELEKALA 1287
            IDIHEAAG+G + +VRA+LK GG++DKRD+DRWTPLM++VR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                 N+KDAEG T GDV+G DLSED+REI   LL+EH   +++TKQRRGSCPAIPRT++ + V+A  + T    + P  + + L          G LLP+  V    K A +  AET   G          A+S+QA G   +HI  SFSAA  IR+HS   +                A+A++     E+P+ TT+   SP R     GQ P  +    + V  T      T + +T  G G + +G   G   +                            RAR +E S ++ EE R REE R Q L +RV ELEK L+
Sbjct:    6 IDIHEAAGDGNLAEVRAFLKAGGIVDKRDSDRWTPLMLSVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWATSFNANSADIMAFEILMGLWRGEKQVRSFRYGYTAVVELLLKRGADANFKDAEGKTPGDVVGSDLSEDSREIALTLLKEHAARVKNTKQRRGSCPAIPRTMMATVVHAAGTGTINGASVPAAAPLLLSSPTAPSHKPGTLLPLPSVVVTNKNAGEIDAETAVDG----------ANSNQAGGQATRHI--SFSAADRIRDHSSTGKNEGRYAEISSAAALVTAAAEETGVSPETPL-TTSEVGSPSRATSAPGQTPGRASDPKKRVPITGGA---TTTADTAGGIGSTAEGQDNGCRDNKNDSEVFALRQALKAAEE----------RARASENSLSQIEERRLREEARAQRLXERVAELEKVLS 449
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1244.1520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNY5_ECTSI5.340e-2751.03Chain A, Crystal Structure Of A Designed Full Cons... [more]
A0A6H5K0I9_9PHAE2.420e-2542.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1244contigS-dermatodea_contig1244:17209..19269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue5.2e-27
Seed eggNOG ortholog2880.D7FNY5
KEGG koko:K21440
EggNOG free text desc.nerve growth factor signaling pathway
EggNOG OGsCOG0666@1,KOG0502@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-10_004810.1
Exons3
Model size1287
Cds size1287
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1244.1520.1prot_S-dermatodea_contig1244.1520.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1244 17209..19269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.1989508-CDS-S-dermatodea_contig1244:17208..176911622924248.1989508-CDS-S-dermatodea_contig1244:17208..17691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 17209..17691 -
1694079123.4004216-CDS-S-dermatodea_contig1244:17208..176911694079123.4004216-CDS-S-dermatodea_contig1244:17208..17691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 17209..17691 -
1622924248.2101197-CDS-S-dermatodea_contig1244:17929..183921622924248.2101197-CDS-S-dermatodea_contig1244:17929..18392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 17930..18392 -
1694079123.4098606-CDS-S-dermatodea_contig1244:17929..183921694079123.4098606-CDS-S-dermatodea_contig1244:17929..18392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 17930..18392 -
1622924248.2215953-CDS-S-dermatodea_contig1244:18928..192691622924248.2215953-CDS-S-dermatodea_contig1244:18928..19269Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 18929..19269 -
1694079123.4238334-CDS-S-dermatodea_contig1244:18928..192691694079123.4238334-CDS-S-dermatodea_contig1244:18928..19269Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 18929..19269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1244.1520.1

>prot_S-dermatodea_contig1244.1520.1 ID=prot_S-dermatodea_contig1244.1520.1|Name=mRNA_S-dermatodea_contig1244.1520.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=429bp
MTTKQASIDIHEAAGEGRMNDVRAYLKGGGLIDKRDADRWTPLMMAVREG
HLEVAKTLLRSGASIEARDQDKWTAMHVAAANGHPQCCQLLLDRGANPRA
IDENKRTPLHWATRYGYAAVVELLLKRGADPNYKDAEGSTSGDVLGKDLS
EDAREIVRALLREHEKMMQSTKQRRGSCPAIPRTVLTSAVNATFSATPAQ
ETTPPDSGVALGPLLPVTVVKGAVDHTAETEHVGGGNDTANAGSADSSQA
TGSGQHIRLSFSAAPHIREHSRKQQQRTDSGTSSTSTTTTPASAQQAPAG
EESPIPTTALPTSPIRGQAPRASGSDHETVGGTKAHDIGTCSGETDLGEG
ESRDGDTGGVEASHGDEGARLGEENGDEVAALKRALRLAEERAREAEASY
AKEEELRRREETRVQILEQRVVELEKALA
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mRNA from alignment at S-dermatodea_contig1244:17209..19269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1244.1520.1 ID=mRNA_S-dermatodea_contig1244.1520.1|Name=mRNA_S-dermatodea_contig1244.1520.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2061bp|location=Sequence derived from alignment at S-dermatodea_contig1244:17209..19269- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAACAAAACAGGCGAGCATAGACATCCACGAAGCGGCCGGGGAAGG
ACGCATGAATGACGTAAGGGCCTACCTCAAGGGCGGAGGGCTTATCGACA
AGCGAGACGCCGACCGATGGACGCCTTTGATGATGGCGGTCCGCGAAGGT
CATCTAGAGGTCGCGAAAACTTTGCTCAGAAGCGGCGCGAGCATTGAAGC
GCGCGACCAGGATAAATGGACAGCTATGCACGTGGCGGCCGCAAATGGGC
ACCCACAATGTTGCCAGCTGCTTTTGGATCGCGGGGCGAACCCCAGAGCC
ATCGACGAGAACAAACGGACTCCTCTCCATTGGGCAACCAGGTAAAAACC
AACGTTTCCTAACGTCCTGTCTATAGCACGCGGGAGGAAAGTCGATGTCA
GACCCCATTCCCCACGTGGGCACCCGTCCTCGGGAGGACTATTTTATATA
GTGTTCCCAGGAGCGGTGGGTGGGGGAGGGGGTGCACATGGACACCGGTA
CTCGAACTTATCGTAAATCGAGCCTCTGCCAAAACATCCTACACTGCAAA
ATCGGAGAGAGAAGAACGCCGAATCATACGATTAACTCTTCTGGTGGATG
TGAGCACGATCCTCCTGCTTGCGGCAGCGGCAGGGGTCTCAATACATACA
CCAAAACCGTCGGGTGTGGCACTGACCAAGGATGCCAACTCTCGAAAAAT
TATTTATCGGCCGATGAAAGCCTTGATACTGAAAAACACAATCTACGTTT
TGTACCTCTTCAACAATAACCTGCTATTATATCCAGACGGTTTGAAACCA
CGATGTTCCGGGAAACGGCCAATACCCGCTCAAACCGTTCCCTGTCTGCC
TTTGACCGCTAAAAATGCCACGCCAAGATACGGATACGCAGCGGTCGTCG
AGCTACTGCTCAAGCGGGGGGCGGACCCGAACTACAAGGACGCTGAAGGA
AGCACCTCTGGGGACGTCCTTGGGAAAGACCTGAGCGAGGACGCTCGTGA
GATCGTCCGCGCCTTGTTGCGCGAACACGAGAAAATGATGCAGAGCACCA
AGCAGCGGCGGGGATCTTGCCCCGCTATCCCCCGGACAGTGCTTACCTCG
GCCGTAAACGCCACCTTTAGCGCAACACCAGCACAAGAAACAACCCCCCC
CGACTCAGGTGTGGCCCTCGGGCCGCTGCTTCCGGTTACTGTTGTGAAGG
GGGCCGTCGATCATACCGCGGAGACAGAACACGTAGGAGGGGGCAATGAC
ACGGCGAACGCTGGAAGTGCTGACTCGTCTCAGGCGACTGGATCGGGTCA
ACATATCCGCCTTTCATTCAGCGCGGCCCCTCACATCCGGGTGAGCTATC
GCATAAACGATCTGGTCAGGTGTTTTTCGCACACGCGCGTGATGGATCGC
GCTTGATGATGGACAGCGTTTGACACTGCAGCCACATACAGCAATTAGTC
GGAACGCTGGCGATCGATCCTTGCCGAAAACCATCGGCGGCACTTCGAAG
GTAGACATACATATACATACAGTACTCGCCCGAACGGTCCTTTTTTTCAT
TGAAAATCGAATCGTTTTGCGCGCATAGGAACACTCCCGGAAGCAACAGC
AACGAACCGACTCCGGTACAAGTTCTACCAGCACAACCACAACTCCTGCT
TCCGCACAGCAAGCACCGGCTGGTGAAGAGTCACCAATACCGACGACAGC
TTTACCGACGAGTCCCATACGAGGTCAAGCCCCGCGTGCGTCGGGGTCAG
ACCACGAAACAGTCGGAGGTACGAAAGCACATGATATCGGCACTTGTAGC
GGTGAGACAGACTTGGGGGAGGGTGAAAGTAGAGACGGTGATACGGGGGG
GGTAGAAGCGAGCCATGGCGATGAAGGTGCGAGACTGGGGGAAGAAAACG
GCGACGAAGTGGCCGCGTTGAAAAGGGCGTTGCGGTTGGCCGAGGAGCGC
GCACGAGAGGCCGAGGCGTCGTACGCCAAGGAGGAAGAGCTTCGCCGTCG
AGAAGAGACGAGGGTACAAATCTTAGAGCAGCGGGTGGTCGAGTTAGAGA
AGGCGCTGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1244:17209..19269-

>mRNA_S-dermatodea_contig1244.1520.1 ID=mRNA_S-dermatodea_contig1244.1520.1|Name=mRNA_S-dermatodea_contig1244.1520.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2574bp|location=Sequence derived from alignment at S-dermatodea_contig1244:17209..19269- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAACAAAACAGGCGAGCATAGACATCCACGAAGCGGCCGGGGAAGG
ACGCATGAATGACGTAAGGGCCTACCTCAAGGGCGGAGGGCTTATCGACA
AGCGAGACGCCGACCGATGGACGCCTTTGATGATGGCGGTCCGCGAAGGT
CATCTAGAGGTCGCGAAAACTTTGCTCAGAAGCGGCGCGAGCATTGAAGC
GCGCGACCAGGATAAATGGACAGCTATGCACGTGGCGGCCGCAAATGGGC
ACCCACAATGTTGCCAGCTGCTTTTGGATCGCGGGGCGAACCCCAGAGCC
ATCGACGAGAACAAACGGACTCCTCTCCATTGGGCAACCAGATGACAACA
AAACAGGCGAGCATAGACATCCACGAAGCGGCCGGGGAAGGACGCATGAA
TGACGTAAGGGCCTACCTCAAGGGCGGAGGGCTTATCGACAAGCGAGACG
CCGACCGATGGACGCCTTTGATGATGGCGGTCCGCGAAGGTCATCTAGAG
GTCGCGAAAACTTTGCTCAGAAGCGGCGCGAGCATTGAAGCGCGCGACCA
GGATAAATGGACAGCTATGCACGTGGCGGCCGCAAATGGGCACCCACAAT
GTTGCCAGCTGCTTTTGGATCGCGGGGCGAACCCCAGAGCCATCGACGAG
AACAAACGGACTCCTCTCCATTGGGCAACCAGATACGGATACGCAGCGGT
CGTCGAGCTACTGCTCAAGCGGGGGGCGGACCCGAACTACAAGGACGCTG
AAGGAAGCACCTCTGGGGACGTCCTTGGGAAAGACCTGAGCGAGGACGCT
CGTGAGATCGTCCGCGCCTTGTTGCGCGAACACGAGAAAATGATGCAGAG
CACCAAGCAGCGGCGGGGATCTTGCCCCGCTATCCCCCGGACAGTGCTTA
CCTCGGCCGTAAACGCCACCTTTAGCGCAACACCAGCACAAGAAACAACC
CCCCCCGACTCAGGTGTGGCCCTCGGGCCGCTGCTTCCGGTTACTGTTGT
GAAGGGGGCCGTCGATCATACCGCGGAGACAGAACACGTAGGAGGGGGCA
ATGACACGGCGAACGCTGGAAGTGCTGACTCGTCTCAGGCGACTGGATCG
GGTCAACATATCCGCCTTTCATTCAGCGCGGCCCCTCACATCCGGATACG
GATACGCAGCGGTCGTCGAGCTACTGCTCAAGCGGGGGGCGGACCCGAAC
TACAAGGACGCTGAAGGAAGCACCTCTGGGGACGTCCTTGGGAAAGACCT
GAGCGAGGACGCTCGTGAGATCGTCCGCGCCTTGTTGCGCGAACACGAGA
AAATGATGCAGAGCACCAAGCAGCGGCGGGGATCTTGCCCCGCTATCCCC
CGGACAGTGCTTACCTCGGCCGTAAACGCCACCTTTAGCGCAACACCAGC
ACAAGAAACAACCCCCCCCGACTCAGGTGTGGCCCTCGGGCCGCTGCTTC
CGGTTACTGTTGTGAAGGGGGCCGTCGATCATACCGCGGAGACAGAACAC
GTAGGAGGGGGCAATGACACGGCGAACGCTGGAAGTGCTGACTCGTCTCA
GGCGACTGGATCGGGTCAACATATCCGCCTTTCATTCAGCGCGGCCCCTC
ACATCCGGGAACACTCCCGGAAGCAACAGCAACGAACCGACTCCGGTACA
AGTTCTACCAGCACAACCACAACTCCTGCTTCCGCACAGCAAGCACCGGC
TGGTGAAGAGTCACCAATACCGACGACAGCTTTACCGACGAGTCCCATAC
GAGGTCAAGCCCCGCGTGCGTCGGGGTCAGACCACGAAACAGTCGGAGGT
ACGAAAGCACATGATATCGGCACTTGTAGCGGTGAGACAGACTTGGGGGA
GGGTGAAAGTAGAGACGGTGATACGGGGGGGGTAGAAGCGAGCCATGGCG
ATGAAGGTGCGAGACTGGGGGAAGAAAACGGCGACGAAGTGGCCGCGTTG
AAAAGGGCGTTGCGGTTGGCCGAGGAGCGCGCACGAGAGGCCGAGGCGTC
GTACGCCAAGGAGGAAGAGCTTCGCCGTCGAGAAGAGACGAGGGTACAAA
TCTTAGAGCAGCGGGTGGTCGAGTTAGAGAAGGCGCTGGCGGAACACTCC
CGGAAGCAACAGCAACGAACCGACTCCGGTACAAGTTCTACCAGCACAAC
CACAACTCCTGCTTCCGCACAGCAAGCACCGGCTGGTGAAGAGTCACCAA
TACCGACGACAGCTTTACCGACGAGTCCCATACGAGGTCAAGCCCCGCGT
GCGTCGGGGTCAGACCACGAAACAGTCGGAGGTACGAAAGCACATGATAT
CGGCACTTGTAGCGGTGAGACAGACTTGGGGGAGGGTGAAAGTAGAGACG
GTGATACGGGGGGGGTAGAAGCGAGCCATGGCGATGAAGGTGCGAGACTG
GGGGAAGAAAACGGCGACGAAGTGGCCGCGTTGAAAAGGGCGTTGCGGTT
GGCCGAGGAGCGCGCACGAGAGGCCGAGGCGTCGTACGCCAAGGAGGAAG
AGCTTCGCCGTCGAGAAGAGACGAGGGTACAAATCTTAGAGCAGCGGGTG
GTCGAGTTAGAGAAGGCGCTGGCG
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