mRNA_S-dermatodea_contig1244.1519.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1244.1519.1
Unique NamemRNA_S-dermatodea_contig1244.1519.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Match: A0A6H5K7K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K5_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 4.070e-114
Identity = 170/238 (71.43%), Postives = 203/238 (85.29%), Query Frame = 3 
Query:  231 LPSTTRTGAPARTQTS--LRMLTAETEAAQYTLDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQEKPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDHQFVRDDNIIFVYSGERMEPDTIKMIRDQVLVKLDPEVTQSKSGLLIGKKEDDTGGGVSTGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQGVDYRVMKIGEVLAKW 938
            +P   RT APAR   S  + M TAETE AQY LDK+AIGGPL PIAN ILV+VRSKD  S+GGIILPEK+Q KPTEGVV+S+GPG+TH ETG  + +PCA+GDKVLYG++DGTAVDY+G DHQFVRD +I+FVYSGERMEP TIKMIRD++LVK+DPE T +KSGLL+G+KE++TG G +TGEVVA GPGR+S+DGE+VPM+V  GD +KFR FAGSEVSLQGVDYRVMK+ EVLAK+
Sbjct:    1 MPGVVRTAAPARPPASSLVSMSTAETETAQYLLDKKAIGGPLTPIANYILVKVRSKDVASQGGIILPEKAQVKPTEGVVVSMGPGKTHPETGVPVDMPCAVGDKVLYGEFDGTAVDYVGTDHQFVRDQDILFVYSGERMEPSTIKMIRDELLVKVDPEATTTKSGLLLGQKEENTGEGSTTGEVVATGPGRSSSDGEIVPMSVATGDFVKFRPFAGSEVSLQGVDYRVMKVNEVLAKY 238
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BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Match: A0A835YMZ7_9STRA (Chaperonin 10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ7_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.970e-72
Identity = 117/222 (52.70%), Postives = 164/222 (73.87%), Query Frame = 3 
Query:  285 MLTAETEAAQYTLDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQEKPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDHQFVRDDNIIFVYSGERMEPDTIKMIRDQVLVKLDPEVTQSKSGLLIGKKEDDTGGGVSTGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQGVD----YRVMKIGEVLAKW 938
            M TAE   A+++L  + IGGPL PI+N+ILVRV+ K   + GG+ L EKS ++PTEG V++VGPG+ H ETG  IP+PC +GDKVLYGK+DGT ++Y G+DHQF+RD +++FVYSG+ M P+TIKM+ DQ+LV+++ +  ++ SGL +   +   G   + G+V+A GPGRT+ADG  VPMT+  GDLIKFR+FAGSE+S+ G+     YRVMK  +VL  +
Sbjct:    1 METAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM-GIGLRTVYRVMKEEDVLVSY 221
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BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.740e-55
Identity = 102/247 (41.30%), Postives = 155/247 (62.75%), Query Frame = 3 
Query:  213 LGFVLPLPSTTRTGAPA--RTQTSLRMLTAETEAAQYTLDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQEKPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDHQFVRDDNIIFVYSGER-MEPDTIKMIRDQVLVKLDPEVTQSKSGLLI--GKKEDDTGGGVSTGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQGVDYRVMKIGEVLAKW 938
            L  +  LP+T    AP   R QTSLR          YTLD   IGGPL P+AN ILV++    D +KGG+ LP++++EKP+ G+V++ G G+ H +TG  +P P   GD+VLYGK+DGT+V Y GEDHQ ++DD+I+  ++G+  M    +K + D VLV++     ++ SG+ +  G  E       ++G VV  G GR +ADG  VP+ V +G+ +KF+++AG+++ L G DY V+++ + LAKW
Sbjct:    4 LSLLAALPATLALVAPTAPRRQTSLR---------DYTLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEETASGIALAAGVSEQTR---TTSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGADIRLDGEDYIVVRVPDCLAKW 238
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BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.580e-55
Identity = 107/258 (41.47%), Postives = 159/258 (61.63%), Query Frame = 3 
Query:  168 AMAAVATTTLCLDGALG-FVLPLPSTTRTGAPARTQTSLRMLTAETEAAQYTLDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQEKPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDHQFVRDDNIIFVYSGERMEPDTIKMIRDQVLVKLDPEVTQSKSGLLIGKKEDDTGGGVSTGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQGVDYRVMKIGEVLAKW 938
            A+A  A   +CL   LG FVLPL    +T   AR+     M  A      + LD + I GPL P+AN +LV+V+  +D+S GGI+LP++++EKPTEG V++ GPGR H ET   +P+P   G KVLYGK+DG +V Y G  H  +RDD+I+  ++G  M  D ++ +RD++LVK+     +S  G+L+      T    + GEV+  GPGR ++ GE+  + V  GD +KF++FAG+E+ +Q  +Y VM   +VLA+W
Sbjct:    4 ALALRACVFVCLPFLLGAFVLPLFPGQKTSFSARSSFPKTMTRA------HNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSM--TKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
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BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Match: K0T1C8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1C8_THAOC)

HSP 1 Score: 183 bits (465), Expect = 9.090e-53
Identity = 90/206 (43.69%), Postives = 142/206 (68.93%), Query Frame = 3 
Query:  321 LDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQEKPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDHQFVRDDNIIFVYSGERMEPDTIKMIRDQVLVKLDPEVTQSKSGLLIGKKEDDTGGGVSTGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQGVDYRVMKIGEVLAKW 938
            L+ R I G L P  N +LV++   +D ++GGI+L   ++ K TEG VIS GPG+TH E+G   P+P   GD V+YGKYDGT V+Y G+ H  +RDD+I+  + G+++  DT  +I D VLVK+D +  ++ SGLLI       GG  STG VV  GPGR +++GE++ + + +GD++K+R+FAG+EV+++G ++ V+++ ++LAK+
Sbjct:   38 LEGREIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVLVKVDDDGEETASGLLIAASAKK-GGKPSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIEGDEFSVVRMTDILAKF 242
[Close]
BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.170e-52
Identity = 91/210 (43.33%), Postives = 139/210 (66.19%), Query Frame = 3 
Query:  315 YTLDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQEKPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDHQFVRDDNIIFVYSGERMEPDTIKMIRDQVLVKLDPEVTQSKSGLLIGKKEDDTGGGV--STGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQGVDYRVMKIGEVLAKW 938
            +TLD + I GPL P++N ILV++R    ++ GGI+LP++S +KP+EG V++ GPGR+H  T   IP+  A G +V+Y KY G  V Y G DH  + DD+++ VY GE+     +KMIRDQVLVK+     ++ +G++I  +   T G    S G+VVA GPGRT+++G+L P  V  G+ +KFR +AG E++L+   Y V+++ + L+KW
Sbjct:   54 HTLDDKVIRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQVLVKITRSEGRTDTGIVISAQ---TAGKELKSEGQVVAVGPGRTASNGQLTPCYVQPGEFVKFREYAGIEITLESESYAVVRMVDCLSKW 260
[Close]
BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.860e-50
Identity = 82/206 (39.81%), Postives = 137/206 (66.50%), Query Frame = 3 
Query:  321 LDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQEKPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDHQFVRDDNIIFVYSGERMEPDTIKMIRDQVLVKLDPEVTQSKSGLLIGKKEDDTGGGVSTGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQGVDYRVMKIGEVLAKW 938
            LD R I   L P++N +LV++R     + GGII+PE ++++P +G+ ++VGPGR H ETG  +P+    G++V+YG+Y GT + Y  EDH  VR+D ++  Y+G+ ++ DT++ + D+VLV++  E  Q+ SG+++  +   +   V  G ++ CGPGR S++GE +PM V   D IKFR + G EV+++G +Y V++  ++LAKW
Sbjct:   33 LDGRPITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKVLVEMTKEEKQTASGIVLSPEASKSR--VCEGIILQCGPGRMSSEGETIPMPVKPDDKIKFREYGGEEVNIEGTEYMVVRANDILAKW 236
[Close]
BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Match: A0A1Z5KFF1_FISSO (Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFF1_FISSO)

HSP 1 Score: 174 bits (442), Expect = 2.390e-49
Identity = 84/206 (40.78%), Postives = 139/206 (67.48%), Query Frame = 3 
Query:  321 LDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQEKPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDHQFVRDDNIIFVYSGERMEPDTIKMIRDQVLVKLDPEVTQSKSGLLIGKKEDDTGGGVSTGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQGVDYRVMKIGEVLAKW 938
            LD R I G + P+ N ILV+     D ++GGI+L  K++   TEG V +VGPG+TH ++G  + +P  +G+ V+YGK+DGT +D  G+ H  +RDD+++  + G+++  +++ ++ D VLV +D   + ++ G+L+ K    T    STGEVV  GPG+ +++GEL+ M V  GD+IKFR+FAG+EV ++G +Y V+K+ ++LAK+
Sbjct:   37 LDGRKIKGDVVPLNNFILVKKAPAQDKTEGGILLTGKAKIVKTEGTVQAVGPGKTHQDSGITVQMPVKVGESVVYGKFDGTEIDLDGQPHTLIRDDDVLVKFHGDQLTLESVNVVFDNVLVAVDSSESATEGGILLAKSSSQTKR-ASTGEVVKVGPGKMASNGELMTMDVTPGDMIKFRDFAGNEVEIEGKEYSVVKMVDILAKY 241
[Close]
BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Match: B8CCQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCQ7_THAPS)

HSP 1 Score: 170 bits (430), Expect = 1.420e-47
Identity = 93/238 (39.08%), Postives = 146/238 (61.34%), Query Frame = 3 
Query:  225 LPLPSTTRTGAPARTQTSLRMLTAETEAAQYTLDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQEKPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDHQFVRDDNIIFVYSGERMEPDTIKMIRDQVLVKLDPEVTQSKSGLLIGKKEDDTGGGVSTGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQGVDYRVMKIGEVLAKW 938
            LPL S   +       T    L++ T      L+ R I G L P  N +LV+V   ++ + GGI+L   ++ K TEG VIS GPG+TH E+G   P+P   G+ V+YGKYDGT + Y G+ H  +RDD+I+  + G ++  D + ++ D VLVK++ +   +  GLLI       G   STGEVV  GPGR +++GE++ + +++GD +KFR+FAG+EV ++G +Y V+++ ++LAK+
Sbjct:    5 LPLLSLALSQGTHAFTTPYTSLSSRTRPLSVKLEGREIDGVLTPTNNFVLVKVAEIEEETAGGILLTGSAKIKKTEGTVISTGPGKTHQESGILFPMPVTPGNGVVYGKYDGTEIVYDGDRHTLIRDDDILVKFDG-KLTLDNVDVVSDNVLVKVNDDQEATSGGLLIAATSKK-GSKPSTGEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEVQIEGEEYAVVRMTDILAKF 240
[Close]
BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Match: A0A7S1UT19_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UT19_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.810e-46
Identity = 94/243 (38.68%), Postives = 143/243 (58.85%), Query Frame = 3 
Query:  216 GFVLPLPSTTRTGAPARTQTSLRMLTAETEAAQYT----LDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQEKPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDHQFVRDDNIIFVYSGERMEPDTIKMIRDQVLVKLDPEVTQSKSGLLIGKKEDDTGGGVSTGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQGVDYRVMKIGEVLA 932
            GF + + ST R G    T     +L AETE A+ T    L+ R I G + P+ N +LV+     + +  GI+L    +   T+G V+SVGPGRTH ETG +I +P   GD VLYG+YDG  +D+ GE H  VRD +++  YSG+ +  D + ++RD VL+++D +   +  G+L+     D     STG VV  GPG+ + DG ++PM   +GD +KFR++AG+EV +    Y V+ + +V+A
Sbjct:   19 GFAV-VSSTRRVGVSFAT-----LLRAETETAEATKTNTLEGREIQGDIVPLNNFVLVKTVGVVEKTDSGIMLAGSEKVVKTKGKVVSVGPGRTHQETGRSIEIPFLNGDSVLYGEYDGIELDFNGETHMLVRDTDVLIKYSGDTLTLDAVDVVRDMVLIEVDAKDQTTAGGVLLADAGRDGSNRPSTGTVVKVGPGKMAGDGSILPMRAKVGDRVKFRDYAGNEVDIDKKQYSVVPMEDVMA 255
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1244.1519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7K5_9PHAE4.070e-11471.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YMZ7_9STRA3.970e-7252.70Chaperonin 10-like protein n=1 Tax=Tribonema minus... [more]
A0A8J2WID0_9STRA1.740e-5541.30Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7TNB8_9STRA2.580e-5541.4720 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=42... [more]
K0T1C8_THAOC9.090e-5343.69Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A835YHA6_9STRA1.170e-5243.33Chaperonin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7R9UAA2_9STRA1.860e-5039.81Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5KFF1_FISSO2.390e-4940.78Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID... [more]
B8CCQ7_THAPS1.420e-4739.08Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1UT19_9STRA1.810e-4638.68Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1244contigS-dermatodea_contig1244:10508..16194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue1e-44
Seed eggNOG ortholog159749.K0T1C8
KEGG koko:K04078
EggNOG free text desc.Belongs to the GroES chaperonin family
EggNOG OGs2XGQX@2836,COG0234@1,KOG1641@2759
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionChaperonin Cpn10
Ec32 orthologEc-10_004830.1
Exons7
Model size1051
Cds size801
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.0868254-UTR-S-dermatodea_contig1244:10507..106471622924248.0868254-UTR-S-dermatodea_contig1244:10507..10647Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1244 10508..10647 +
1694079123.2813208-UTR-S-dermatodea_contig1244:10507..106471694079123.2813208-UTR-S-dermatodea_contig1244:10507..10647Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1244 10508..10647 +
1622924248.1637537-UTR-S-dermatodea_contig1244:16084..161941622924248.1637537-UTR-S-dermatodea_contig1244:16084..16194Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1244 16085..16194 +
1694079123.390834-UTR-S-dermatodea_contig1244:16084..161941694079123.390834-UTR-S-dermatodea_contig1244:16084..16194Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1244 16085..16194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.1003354-CDS-S-dermatodea_contig1244:10647..106491622924248.1003354-CDS-S-dermatodea_contig1244:10647..10649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 10648..10649 +
1694079123.2951152-CDS-S-dermatodea_contig1244:10647..106491694079123.2951152-CDS-S-dermatodea_contig1244:10647..10649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 10648..10649 +
1622924248.1098838-CDS-S-dermatodea_contig1244:11400..115371622924248.1098838-CDS-S-dermatodea_contig1244:11400..11537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 11401..11537 +
1694079123.3180747-CDS-S-dermatodea_contig1244:11400..115371694079123.3180747-CDS-S-dermatodea_contig1244:11400..11537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 11401..11537 +
1622924248.1188223-CDS-S-dermatodea_contig1244:12362..125141622924248.1188223-CDS-S-dermatodea_contig1244:12362..12514Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 12363..12514 +
1694079123.3405623-CDS-S-dermatodea_contig1244:12362..125141694079123.3405623-CDS-S-dermatodea_contig1244:12362..12514Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 12363..12514 +
1622924248.127395-CDS-S-dermatodea_contig1244:13691..137961622924248.127395-CDS-S-dermatodea_contig1244:13691..13796Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 13692..13796 +
1694079123.3504682-CDS-S-dermatodea_contig1244:13691..137961694079123.3504682-CDS-S-dermatodea_contig1244:13691..13796Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 13692..13796 +
1622924248.1357179-CDS-S-dermatodea_contig1244:14313..144631622924248.1357179-CDS-S-dermatodea_contig1244:14313..14463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 14314..14463 +
1694079123.358699-CDS-S-dermatodea_contig1244:14313..144631694079123.358699-CDS-S-dermatodea_contig1244:14313..14463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 14314..14463 +
1622924248.1454804-CDS-S-dermatodea_contig1244:15066..151531622924248.1454804-CDS-S-dermatodea_contig1244:15066..15153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 15067..15153 +
1694079123.3664813-CDS-S-dermatodea_contig1244:15066..151531694079123.3664813-CDS-S-dermatodea_contig1244:15066..15153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 15067..15153 +
1622924248.1547523-CDS-S-dermatodea_contig1244:15916..160841622924248.1547523-CDS-S-dermatodea_contig1244:15916..16084Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 15917..16084 +
1694079123.3775597-CDS-S-dermatodea_contig1244:15916..160841694079123.3775597-CDS-S-dermatodea_contig1244:15916..16084Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1244 15917..16084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1244.1519.1prot_S-dermatodea_contig1244.1519.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1244 10648..16084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1244.1519.1

>prot_S-dermatodea_contig1244.1519.1 ID=prot_S-dermatodea_contig1244.1519.1|Name=mRNA_S-dermatodea_contig1244.1519.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=267bp
MLLRTLGCTAMAAVATTTLCLDGALGFVLPLPSTTRTGAPARTQTSLRML
TAETEAAQYTLDKRAIGGPLAPIANSILVRVRSKDDISKGGIILPEKSQE
KPTEGVVISVGPGRTHSETGNAIPLPCAIGDKVLYGKYDGTAVDYLGEDH
QFVRDDNIIFVYSGERMEPDTIKMIRDQVLVKLDPEVTQSKSGLLIGKKE
DDTGGGVSTGEVVACGPGRTSADGELVPMTVNMGDLIKFRNFAGSEVSLQ
GVDYRVMKIGEVLAKW*
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mRNA from alignment at S-dermatodea_contig1244:10508..16194+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1244.1519.1 ID=mRNA_S-dermatodea_contig1244.1519.1|Name=mRNA_S-dermatodea_contig1244.1519.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5687bp|location=Sequence derived from alignment at S-dermatodea_contig1244:10508..16194+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCCTACGTCACGCCGGGGCCTCGGAGGAAGAGATCGACACTACGGGGC
GCTCCTTGTGCCAGCAGCCTTCCCTTTGCCCTCCAACACAGGAAGAAGGA
GCTAAAGTCGCCAAGAAACTCCGCACAACAACAACAAAAAATGTGAGGCT
CGCTCTCTCTCTCCCGCACACCAGTCTCATGTTCACATGTTCACAGCATG
CACGGGAGGGGCCGCACGTAGCACGCTGTGCCTCGCGCCGCTTCATGGCA
TGGTTGGAGCATAAGAGTGGCGTGGAATCCGGGCGAGTAGATATCGCTGG
CTCTCGGTCCTTCGTGGTGCCCTCCTTATACATATCTGTGCGGGTGATTG
GTGCTTCGGCCTGTTGACGTGTCGTGTGTGTCATTCAACCATAGCCTTAT
CATATACCCACTTGCAAGCAACCCCCCACTTGACACTCGGCCGCGATGAG
AGAGGTTACTGCAGGAGAGACTTAGCGGCACCTCACGGGTTGTGTGCGTG
TTCGTGTTCGTGTTGCTCGCTGTGACAGGCTGGTGTAAGATGCCTGCATT
GTGACTGCTCGAGATTTGCTTTGCTCGTACAGTAACAACCGATTGCGTTT
CCCTGTCTATAAGTCTATATGATCGTATACATGAACCCTCAGAATCGTAC
CTTTAGACTACACCAGTTTGCGTCGCATGCAGAAAACACGGACATCAGCA
CCGTGCTGGCATTGTCTTACGCTAGATCGCCGTGCACAGCAATAGGCTAA
AACCCCCGTGTCCGACGGTGCTGAGCCCCCGGGCGTATCAACAAATGTCT
ACACCTAAGACACTTGCAGTTTTATGTTGCAAACACTTGCTGTTGCTGTT
TACACCATCAACCATGCCCTCCTCGCTCCTCGCCATCCCTCAGGCTGCTG
CGAACCCTTGGATGCACCGCCATGGCGGCGGTGGCCACCACCACCCTGTG
CCTCGACGGGGCTCTTGGGTTCGTGCTTCCGTTGCCCTCGACCACGAGGA
CAGGCGCGCCCGCACGAACACAGACCTCTCGTGAGTTAATGTAGCTTGGG
TTTGGACGTTTGGACTGTGTTTCCCCATTGGCGTGAGCCATCCTTGCTGT
AATTCTGGCGTAGCATGGTGTTTCTAGAAAGTCCCGGCAAACGGCAAACA
CCGAACTATCTCCACACTCGATTCCCCCGCTCTAGTGCCAAGATTTTAAC
CGGTTCGTGCCCGTGCGCACGCCTGGAGACGGCTGTGAAATTCGCGTAAA
AACACGCACTCGCTGGAAGCGATCATTACGGACATGTTTACGTATGGTGC
AGCCGTTTGCCTGTAATAGATCTTCAACCAACCCTCTGTGGTACGGTACC
CTACGTGCATCCATATCATATGCATAGGTGTGGCATGTTGGGGGTTGGTT
ATCAACCGCGAGGATGGCCGTGGGTCAACGCCGCCCGTTCACACGGCCTG
CCGCAGGTTACGTGGCGCTGCTGCTATAAATAGTGTAGTCCATCCAATTT
GCACCTTCGGCACGTACTTGCTATTTAGGAGAGCTGTGATTACGACATAC
CACTTTTGCAACGGGAACACGTACCCCAGTCCCAACATAAGACCGCCGCC
TCCGTGCGACGTCGAATCTGTGGGTAACCTCATGGGCTCACCTGCTTGCC
GTTCTCGTCGGCTGAGCCTCTCTTTGACCCCTTTCGCACCATGCAGAATA
TGCGTGTACTTTATGATCGAAGGAAAATAAATGTCCCTCCGATATCCCAC
ACGATAAAGAGTCGGGGGGGGGGGGGGGGTCTGGGAGCCCACGTCCCCAT
GTCCCCATGCCTGCCTCTTAACCCCGCCCCACCCCATCCGTCACTCTCGT
AGCAGTGAGGATGTTGACCGCGGAGACGGAGGCAGCGCAGTACACGCTGG
ACAAGAGGGCCATCGGCGGGCCCCTGGCCCCCATCGCGAACAGCATTCTC
GTCAGAGTGCGGTCGAAGGACGACATTTCCAAGGGCGGCATCATCCTTCC
GGAAAAGGCGAGTTGGGGCCGGTTCCTACTGCTGTATCGTGCCGAGCACA
CGGCTTTACTAATATTCGCGAAAATGAAAAGCGTAGGCAGAATGCGAACC
GTTGTTTTTGAGAGCAAAAAAAAGGCGAACCGTTTTCGCGAGGTACCGTA
CGACTTTTCGAAAGGAGGCGCGCCGTGTTCATTGTTTTGGGACATGAAGG
TGTTGCCTTCCAGCGCGAGCCTCGTGGAGACGCTGCGCATCTCCGAGAGC
CCTACGACGACACAGCAGCGGAACGATTCGTCACGATGGCAGAACAAGTG
CATCGTGGTTCCGTCTGTGGTAGGATATCGACCGCATCAGGCGTGGCCCA
AGCCATCACGCATCTCGACAACCTACCCGGGCCGCTCTCGAAAACCTTGC
CTTTGGCTAAATTCACTCTGTGGCGGCCACAGTTACTCTCGAAGCCTTCA
CGCGGTTCCGGGAGCCAGTCCTTCGCTCAACACGGTGCCACTCAAGCCTG
CGAATTAACCGAACTGGCGCTGAATTGGCGCGGGCGTTTAGTAACCTCGG
CCCGGAAGCCCTGGGGAAACTGTGCATCATCACATTAATTATGTAGTAAA
AGCATTGTCGTGCGAAACGAGTTTCACATATTTGTGGTCGGGAATGGCTT
TTAAAAAAATGTGCTCGATAGAAAGGGCCCCTTGAAACACTACCATAGGC
CTTGCCCCACGTGCGCGCGACTTATGTGTGTCAGCACACTTTGCTCACGT
GTGCGAGGTTTCGGAGAGACGTGTCGGCGTCAAATTCATTGCGCGCAACG
TCTCAAGCACGGTCTACTCCGACATGTTGTATGCCGGTATCGAGTGAAAT
CGAGTGTGAGTTGAGTTCGTCGAGAGCAACGCTGAAAACACTCGAGCTCA
CTCCGCGAGGTTGAAGCCAGTGGTGAACGCGGCATGGTTTTGCATGGATC
GCTGTGGATGCTTCGACATTCAAGCCAGGTGCAGATGGGTTTGACTGTTT
GATGTCAACACCTCCATCCTGAACAAGATATAACTTTTTCATCCACGCCT
GACCAAGACTCCCGCCTCGCAAGGTTCTTACCGTTAACACTGCTGTAGAT
GGCATGTACAGTTGTCGCAACGACGCATGCCTCGATATTCACCCTCGCGA
CGTCGCTGTTTCGCGCGAAATTGTGTTTGTGCAGTCTCAAGAGAAACCCA
CGGAGGGCGTGGTGATCTCTGTGGGCCCGGGGAGGACGCACTCCGAGACG
GGAAACGCCATTCCCCTCCCTTGTGCCATTGGGGACAAGGTGAGAGTGGA
CGGTTTACATCCACGTTTCTCTGGTTTTGTGTTTGTGTTGTGTCTGTGTG
AGCGATTTGTTTTTTTAGCCTGACTTCCGACTGGCAAACCTGCACATGAT
AGCATTTGGCTGTGCACGAGTCCCTCCCATTTCTCTCTGTCAGAATGTGT
GTCTCATTTGTTTTACACAGCGTTGCCGCAACTCGCCTACATGTGGTATT
TCTCGGATTTTGGCGCTAGACTGCCCGTTTTTTATTTCTTGACTGTTGAG
CCGTACGGTAGCGGATGTTCGCATCTCGTGCCGAACCCAAACGTAGGCAG
CCTGTGTCACCTCCGCTCCTTCCCTCCACCGAGGGAGGCCCGTCTTCGTC
ACAGCAGCGCATTAGCCATCGCACCACGCCGTGTGCCAATACCCCAAGCC
GATACTGCTCCACAGCGGTACAAGAGTGCCCTTTTCCAGCGTTCAAAAGT
TGACGCCATCCTCGTATCGCAACTCCCCTGGGAACCACTTTTGGGGGGAA
CGGTAGGTGTTGTACGGCAAGTATGACGGCACCGCGGTGGACTACCTGGG
CGAGGACCACCAGTTCGTCCGCGACGACAACATTATCTTCGTCTACTCGG
GGGAGCGGATGGAACCGGACACAATCAAGATGATCAGGGACCAGGTTCTT
GTCAAGGTGTGGAGGGACTCCCCTTTTAGGACAACACACATTTTATCGAA
TGAGCCCCTGGTGTTTAGTTTCTGTTTTGGTAAGATCCCCGCCCCTACCC
CGCCCCTACCCCGACCCCCAACCCCCGACCCCCCCCCCCCCAGCGGGAGC
AAATCATCGGGCTTTTGCGCCGTTTGAACAAAAGGCCGTGTTGTCGTTGC
CATCTTGGGCAGTGTGCCGACGGGCGTACTCCTCAGTAAGTCAAGGGTTT
GAAGTGTGTGTAGCGAGCGTGATTTTGATCTTGTTGCCAACGGTGAAACT
ACAGTATCCGCTCCGACTGCCCACATGCAGTATCCCTCTTGCGTGGTCGG
GTTTGTCATGAGGTTTCGATGTGCAGAAAATAATCGCCAATTATTCGTTT
TGCGTTTTTGTCCGCCACCGTAGCGGTCGTAGGACTACTGTCATACCAAC
CACCTCGATCATTTCTTGCACGTACTCTTGCTGTGCTTTTCTTGGCTTAC
GCGCGTCTCATATTGTAGTGCCGTCGCTGTTGATGCACTTCGTTATATTC
TGACTCCCTGCGCGTGCCTGACCGCCCCTTTGCCTGTTTGCTTGCGTCGT
CGCCAAAAGCTCGACCCTGAGGTCACCCAGTCCAAGTCCGGGCTTTTGAT
CGGAAAGAAAGAAGATGACACCGGCGGCGGCGTCAGCACGGGGGAGGTAT
GTATGCGGTCCTTGTTGACGACGGCAATATTAGTGTTCCCCTGCACAAGC
TTTGTCGTTGCGGCGGGACTGGCTGGTTGTCTCTCGTTTTATTGTGCGCG
GTACGAGTGGGGGTGAATGTATAGCTTGCTTTAAACATTTGACAAGGCCC
TCGAACGGTATCAGTTGTCTAAACGAGTTTGTGCTTTGTTTTGTTCACTA
TGGGCTACACGCACGGGATATAGACGCCTCTGCGACTCGCATGACAATCG
CCGCATTGTGCCTCCGTGACATGTTTGTTGTTTCAGTTTTACGTGCATCC
GGTGGCGTTTGTTCGTTTCCTCCCACTATTTCAGTCGCTTTGACATGTCC
TATTATTCAATAGTAGCGTACCTAAATGGGGTTTTAGGCCTTCGCTACCA
ATCCGAGCGATTGGCGAGCTGCGGGAGCACTGAACCCGATGCGCGCAAGA
AATGCTGAGGCGTAGACCGAGGAGAGATGAGTTGATCCCTCGTGACTGCA
GACGGGATTTGGACAAGGCTGATCGGTCGTACCTGGTGTGTAAAGTACAC
ACACACCGCCACCACCACTGCAGGAAACCTGCGACTGACGTTGCCCATCG
AGACTCAGCTAGCGCCAGTAGGAGGCTCTTGCCTTGGGTCGTGTTCTACG
GGCCAAGGCGTACGCAACGACTCCGGACGGAAAAATGTCGACCTCAACAT
GCCAAATCGTGCGCGACCCCTCCACATGCCTTCGCTTGCTGACGCTTTTC
TCCGCATAGGTGGTGGCTTGCGGGCCTGGACGAACGTCGGCGGACGGAGA
GCTCGTCCCTATGACCGTGAACATGGGCGATTTGATCAAGTTCAGGAATT
TTGCGGGCTCCGAGGTGTCCCTGCAGGGGGTGGATTACCGGGTGATGAAG
ATCGGGGAGGTGCTTGCTAAGTGGTGACGTGCTGCTGCCTTTGTCAGAGT
TGTCTTTCTGTGGCCCTCCTTCGGTTTTGGGTAGCCACCGCGGTGGCAGC
ACGCAACTCGTTTAGTGGCAGTTCGCGCGCGCGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1244:10508..16194+

>mRNA_S-dermatodea_contig1244.1519.1 ID=mRNA_S-dermatodea_contig1244.1519.1|Name=mRNA_S-dermatodea_contig1244.1519.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at S-dermatodea_contig1244:10508..16194+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATATGCTGCTGCGAACCCTTGGATGCACCGCCATGGCGGCGGTGGCCACC
ACCACCCTGTGCCTCGACGGGGCTCTTGGGTTCGTGCTTCCGTTGCCCTC
GACCACGAGGACAGGCGCGCCCGCACGAACACAGACCTCTCGCTGCTGCG
AACCCTTGGATGCACCGCCATGGCGGCGGTGGCCACCACCACCCTGTGCC
TCGACGGGGCTCTTGGGTTCGTGCTTCCGTTGCCCTCGACCACGAGGACA
GGCGCGCCCGCACGAACACAGACCTCTCTGAGGATGTTGACCGCGGAGAC
GGAGGCAGCGCAGTACACGCTGGACAAGAGGGCCATCGGCGGGCCCCTGG
CCCCCATCGCGAACAGCATTCTCGTCAGAGTGCGGTCGAAGGACGACATT
TCCAAGGGCGGCATCATCCTTCCGGAAAAGTGAGGATGTTGACCGCGGAG
ACGGAGGCAGCGCAGTACACGCTGGACAAGAGGGCCATCGGCGGGCCCCT
GGCCCCCATCGCGAACAGCATTCTCGTCAGAGTGCGGTCGAAGGACGACA
TTTCCAAGGGCGGCATCATCCTTCCGGAAAAGTCTCAAGAGAAACCCACG
GAGGGCGTGGTGATCTCTGTGGGCCCGGGGAGGACGCACTCCGAGACGGG
AAACGCCATTCCCCTCCCTTGTGCCATTGGGGACAAGTCTCAAGAGAAAC
CCACGGAGGGCGTGGTGATCTCTGTGGGCCCGGGGAGGACGCACTCCGAG
ACGGGAAACGCCATTCCCCTCCCTTGTGCCATTGGGGACAAGGTGTTGTA
CGGCAAGTATGACGGCACCGCGGTGGACTACCTGGGCGAGGACCACCAGT
TCGTCCGCGACGACAACATTATCTTCGTCTACTCGGGGGAGCGGATGGAA
CCGGACACAATCAAGATGATCAGGGACCAGGTTCTTGTCAAGGTGTTGTA
CGGCAAGTATGACGGCACCGCGGTGGACTACCTGGGCGAGGACCACCAGT
TCGTCCGCGACGACAACATTATCTTCGTCTACTCGGGGGAGCGGATGGAA
CCGGACACAATCAAGATGATCAGGGACCAGGTTCTTGTCAAGCTCGACCC
TGAGGTCACCCAGTCCAAGTCCGGGCTTTTGATCGGAAAGAAAGAAGATG
ACACCGGCGGCGGCGTCAGCACGGGGGAGCTCGACCCTGAGGTCACCCAG
TCCAAGTCCGGGCTTTTGATCGGAAAGAAAGAAGATGACACCGGCGGCGG
CGTCAGCACGGGGGAGGTGGTGGCTTGCGGGCCTGGACGAACGTCGGCGG
ACGGAGAGCTCGTCCCTATGACCGTGAACATGGGCGATTTGATCAAGTTC
AGGAATTTTGCGGGCTCCGAGGTGTCCCTGCAGGGGGTGGATTACCGGGT
GATGAAGATCGGGGAGGTGCTTGCTAAGTGGTGAGTGGTGGCTTGCGGGC
CTGGACGAACGTCGGCGGACGGAGAGCTCGTCCCTATGACCGTGAACATG
GGCGATTTGATCAAGTTCAGGAATTTTGCGGGCTCCGAGGTGTCCCTGCA
GGGGGTGGATTACCGGGTGATGAAGATCGGGGAGGTGCTTGCTAAGTGGT
GA
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