mRNA_S-dermatodea_contig12439.1517.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12439.1517.1
Unique NamemRNA_S-dermatodea_contig12439.1517.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12439.1517.1 vs. uniprot
Match: A0A6H5L814_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L814_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.450e-30
Identity = 63/135 (46.67%), Postives = 78/135 (57.78%), Query Frame = 1 
Query:    1 YDTVPECGYGDSQLNFAIHVRMGDRRVLQTEVTRDYFEYLHDFMDVVTDAVLAKGLEVPKFHVFTEALLPCPARDTGLFPEFPLWPISRDQIEPCYSATMPDDCPEKRAGAANCNA-------DRTGIFDVEGMP 384
            Y+  P CGY +SQLNFA+HVRMGDRR L+  VT +YF  L DFM  VT AV+ +    P FHVF+EAL PCP+ +   F EFPLWP+ RDQ++   S         ++      NA        R G F VEG P
Sbjct:   14 YNDEPGCGYEESQLNFALHVRMGDRRELEG-VTPEYFSLLEDFMATVTQAVVEREQAAPMFHVFSEALYPCPSPENATFTEFPLWPVERDQVDLNVSLHRLFSLSNEKVSVCLRNAAEQGAPASRKGTFRVEGRP 147
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BLAST of mRNA_S-dermatodea_contig12439.1517.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.780e-28
Identity = 61/128 (47.66%), Postives = 73/128 (57.03%), Query Frame = 1 
Query:    1 YDTVPECGYGDSQLNFAIHVRMGDRRVLQTEVTRDYFEYLHDFMDVVTDAVLAKGLEVPKFHVFTEALLPCPARDTGLFPEFPLWPISRDQIEPCYSATMPDDCPEKRAGAANCNADRTGIFDVEGMP 384
            Y+  PECGY +S+LNFA+HVRMGDRR L+  VT +YF  L  FM  VT AV+ +    P FHVF+EAL PCP  +   F EFP WP+ RDQ+  C       D P          A R   F VEG P
Sbjct:  172 YNDEPECGYEESELNFALHVRMGDRRELEG-VTPEYFSLLEGFMATVTQAVVEREQAAPMFHVFSEALYPCPFPENATFTEFPFWPVERDQVSVCPRNAAEQDGP----------ASRPDTFRVEGRP 288
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BLAST of mRNA_S-dermatodea_contig12439.1517.1 vs. uniprot
Match: D7G5J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J8_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.950e-23
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:   64 MGDRRVLQTEVTRDYFEYLHDFMDVVTDAVLAKGLEVPKFHVFTEALLPCPARDTGLFPEFPLWPISRDQIEPCYSATMPDDCPEKRAGAANCNADRTGIFDV 372
            MGDRR    + +  YF  +   M+ V D    +GL  P FHVF+E L PCP+  TGLF EFP+WP+  D+IE C +A  P DCPEK+AG   C   R GIF +
Sbjct:    1 MGDRRAFY-DGSLQYFHNVELIMETVADEFRERGLPEPLFHVFSETLSPCPSTVTGLFDEFPIWPVELDKIEECLAAATPIDCPEKQAGTF-CTPKRAGIFRI 101
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12439.1517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L814_9PHAE2.450e-3046.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRT1_ECTSI3.780e-2847.66Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus ... [more]
D7G5J8_ECTSI1.950e-2347.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12439contigS-dermatodea_contig12439:5838..6741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue4.2e-25
Seed eggNOG ortholog2880.D7FRT1
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0318@1,KOG3628@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size386
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.847269-CDS-S-dermatodea_contig12439:5837..61101622924247.847269-CDS-S-dermatodea_contig12439:5837..6110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12439 5838..6110 +
1694079123.1099627-CDS-S-dermatodea_contig12439:5837..61101694079123.1099627-CDS-S-dermatodea_contig12439:5837..6110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12439 5838..6110 +
1622924247.8615575-CDS-S-dermatodea_contig12439:6630..67411622924247.8615575-CDS-S-dermatodea_contig12439:6630..6741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12439 6631..6741 +
1694079123.1253624-CDS-S-dermatodea_contig12439:6630..67411694079123.1253624-CDS-S-dermatodea_contig12439:6630..6741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12439 6631..6741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12439.1517.1prot_S-dermatodea_contig12439.1517.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12439 5838..6741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12439.1517.1

>prot_S-dermatodea_contig12439.1517.1 ID=prot_S-dermatodea_contig12439.1517.1|Name=mRNA_S-dermatodea_contig12439.1517.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
YDTVPECGYGDSQLNFAIHVRMGDRRVLQTEVTRDYFEYLHDFMDVVTDA
VLAKGLEVPKFHVFTEALLPCPARDTGLFPEFPLWPISRDQIEPCYSATM
PDDCPEKRAGAANCNADRTGIFDVEGMP
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mRNA from alignment at S-dermatodea_contig12439:5838..6741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12439.1517.1 ID=mRNA_S-dermatodea_contig12439.1517.1|Name=mRNA_S-dermatodea_contig12439.1517.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=904bp|location=Sequence derived from alignment at S-dermatodea_contig12439:5838..6741+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGACACAGTTCCCGAGTGCGGCTACGGCGACAGCCAGCTCAACTTCGC
GATTCACGTCCGAATGGGCGACAGGAGGGTCCTGCAAACCGAAGTGACGC
GCGATTACTTCGAATACTTGCACGACTTCATGGACGTCGTGACAGACGCC
GTTTTGGCGAAAGGTCTTGAAGTCCCTAAGTTTCACGTCTTCACAGAAGC
GCTACTGCCCTGCCCGGCTAGAGATACGGGCCTTTTCCCGGAATTCCCTC
TCTGGCCGATTTCGAGAGACCAGGCGAGTACTCACTGTGTCATTTGATAC
CTACTTCCATGTTTTCATTCCTGCTCGCGTAAATCGTGGCCGGGGGGAGT
TCGGAGTTGCACAAACCCTAGATAGTCCAACTGCGCGTTTTCAAACCCAA
GCCTAGAGGTTCTTCTGAGGGTCCGTCTGACCATGCCGGATGTTGTGCAA
TGGTGGGGTTTGATTATCGACGGACGCGTCTGCGTCTAGTTCGGCGAAAA
ACTTCCTCGGCGCAGTCCTGTTGCGTCCCGAGTAAACGTATGATATGGTG
TGTCTTATCTGCCCGTTTCATGATAGTTGGTAACCACCCCTCACTGGACG
AAGCGCAAGGGTTGGTCGAAGGCGATCGCTCCGATGTGATGAGCAGTTCC
TCCGCGGCAAGGGCGAGTCTGCAGGCGATCGACGCGAAAATGCATAACTC
GCACGACACTACACAGACAGTTTTGTATCGTTTGACGACCCTGGTTACTG
CTCCGTCTTTTTGCGACATGTTCCTATCGGTTCAATCGCGCAGATTGAAC
CCTGCTACAGCGCAACGATGCCGGATGACTGCCCGGAAAAACGAGCGGGG
GCAGCAAATTGCAACGCGGATAGGACGGGAATATTCGACGTGGAAGGGAT
GCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12439:5838..6741+

>mRNA_S-dermatodea_contig12439.1517.1 ID=mRNA_S-dermatodea_contig12439.1517.1|Name=mRNA_S-dermatodea_contig12439.1517.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig12439:5838..6741+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGACACAGTTCCCGAGTGCGGCTACGGCGACAGCCAGCTCAACTTCGC
GATTCACGTCCGAATGGGCGACAGGAGGGTCCTGCAAACCGAAGTGACGC
GCGATTACTTCGAATACTTGCACGACTTCATGGACGTCGTGACAGACGCC
GTTTTGGCGAAAGGTCTTGAAGTCCCTAAGTTTCACGTCTTCACAGAAGC
GCTACTGCCCTGCCCGGCTAGAGATACGGGCCTTTTCCCGGAATTCCCTC
TCTGGCCGATTTCGAGAGACCAGTATGACACAGTTCCCGAGTGCGGCTAC
GGCGACAGCCAGCTCAACTTCGCGATTCACGTCCGAATGGGCGACAGGAG
GGTCCTGCAAACCGAAGTGACGCGCGATTACTTCGAATACTTGCACGACT
TCATGGACGTCGTGACAGACGCCGTTTTGGCGAAAGGTCTTGAAGTCCCT
AAGTTTCACGTCTTCACAGAAGCGCTACTGCCCTGCCCGGCTAGAGATAC
GGGCCTTTTCCCGGAATTCCCTCTCTGGCCGATTTCGAGAGACCAGATTG
AACCCTGCTACAGCGCAACGATGCCGGATGACTGCCCGGAAAAACGAGCG
GGGGCAGCAAATTGCAACGCGGATAGGACGGGAATATTCGACGTGGAAGG
GATGCCGATTGAACCCTGCTACAGCGCAACGATGCCGGATGACTGCCCGG
AAAAACGAGCGGGGGCAGCAAATTGCAACGCGGATAGGACGGGAATATTC
GACGTGGAAGGGATGCCG
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