mRNA_S-dermatodea_contig12437.1516.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12437.1516.1
Unique NamemRNA_S-dermatodea_contig12437.1516.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12437.1516.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.540e-23
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 2 
Query:  263 MLTRKQQWRRTRTRKHAWGDLPPEVIEAMLAAGAGGMSKSISWDHSYAAGLKMRADKAADAARRAAKQGSRVEAA 487
            M TRKQ+WRRTRTRK AWGDLPPE+++AMLAAG G M KS+SWDHSYAA LK+RAD+AA+ A RAA + S++ AA
Sbjct:    1 MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGRMPKSVSWDHSYAARLKIRADRAAEVAHRAAAEDSKLRAA 75
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12437.1516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2B2_9PHAE3.540e-2370.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12437contigS-dermatodea_contig12437:548..1069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size522
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.805404-CDS-S-dermatodea_contig12437:547..9761622924247.805404-CDS-S-dermatodea_contig12437:547..976Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12437 548..976 +
1694079123.0901399-CDS-S-dermatodea_contig12437:547..9761694079123.0901399-CDS-S-dermatodea_contig12437:547..976Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12437 548..976 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.818378-UTR-S-dermatodea_contig12437:976..10691622924247.818378-UTR-S-dermatodea_contig12437:976..1069Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12437 977..1069 +
1694079123.1002703-UTR-S-dermatodea_contig12437:976..10691694079123.1002703-UTR-S-dermatodea_contig12437:976..1069Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12437 977..1069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12437.1516.1prot_S-dermatodea_contig12437.1516.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12437 548..976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12437.1516.1

>prot_S-dermatodea_contig12437.1516.1 ID=prot_S-dermatodea_contig12437.1516.1|Name=mRNA_S-dermatodea_contig12437.1516.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
AAPKKSAACWLALRGPRQPKNHGAPRAAPASTLQQRHHPRPSIANTPKAA
TAQPGGAAGAFDGLRGPRPGGFRRRPRSPTPEWPALEYAHSEAAMETDTY
AQARVGRSASRGHRGHARGRGRRYVQVDFLGSQLCGRPQDEG*
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mRNA from alignment at S-dermatodea_contig12437:548..1069+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12437.1516.1 ID=mRNA_S-dermatodea_contig12437.1516.1|Name=mRNA_S-dermatodea_contig12437.1516.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=522bp|location=Sequence derived from alignment at S-dermatodea_contig12437:548..1069+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGCGCCCAAGAAGTCGGCCGCTTGCTGGCTAGCTCTTCGCGGGCCGCG
CCAACCCAAGAACCACGGCGCTCCTCGCGCTGCTCCAGCATCAACACTAC
AGCAGCGGCACCACCCTCGGCCTTCGATCGCGAACACGCCGAAGGCAGCC
ACAGCGCAACCCGGCGGCGCTGCTGGTGCCTTTGACGGCCTACGAGGGCC
CCGCCCAGGAGGCTTCCGGAGGAGGCCACGGAGCCCCACGCCTGAGTGGC
CCGCTCTCGAGTATGCTCACTCGGAAGCAGCAATGGAGACGGACACGTAC
GCGCAAGCACGCGTGGGGAGATCTGCCTCCCGAGGTCATCGAGGCCATGC
TCGCGGCCGGGGCAGGCGGTATGTCCAAGTCGATTTCCTGGGATCACAGC
TATGCGGCAGGCCTCAAGATGAGGGCTGACAAGGCCGCCGATGCCGCGCG
GCGAGCGGCGAAACAGGGCTCCAGGGTCGAAGCGGCGGCGAAAGTAACGA
AAGCTAAGGCGGCGGCGGCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12437:548..1069+

>mRNA_S-dermatodea_contig12437.1516.1 ID=mRNA_S-dermatodea_contig12437.1516.1|Name=mRNA_S-dermatodea_contig12437.1516.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig12437:548..1069+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGCGCCCAAGAAGTCGGCCGCTTGCTGGCTAGCTCTTCGCGGGCCGCG
CCAACCCAAGAACCACGGCGCTCCTCGCGCTGCTCCAGCATCAACACTAC
AGCAGCGGCACCACCCTCGGCCTTCGATCGCGAACACGCCGAAGGCAGCC
ACAGCGCAACCCGGCGGCGCTGCTGGTGCCTTTGACGGCCTACGAGGGCC
CCGCCCAGGAGGCTTCCGGAGGAGGCCACGGAGCCCCACGCCTGAGTGGC
CCGCTCTCGAGTATGCTCACTCGGAAGCAGCAATGGAGACGGACACGTAC
GCGCAAGCACGCGTGGGGAGATCTGCCTCCCGAGGTCATCGAGGCCATGC
TCGCGGCCGGGGCAGGCGGTATGTCCAAGTCGATTTCCTGGGATCACAGC
TATGCGGCAGGCCTCAAGATGAGGGCTGAGCTGCGCCCAAGAAGTCGGCC
GCTTGCTGGCTAGCTCTTCGCGGGCCGCGCCAACCCAAGAACCACGGCGC
TCCTCGCGCTGCTCCAGCATCAACACTACAGCAGCGGCACCACCCTCGGC
CTTCGATCGCGAACACGCCGAAGGCAGCCACAGCGCAACCCGGCGGCGCT
GCTGGTGCCTTTGACGGCCTACGAGGGCCCCGCCCAGGAGGCTTCCGGAG
GAGGCCACGGAGCCCCACGCCTGAGTGGCCCGCTCTCGAGTATGCTCACT
CGGAAGCAGCAATGGAGACGGACACGTACGCGCAAGCACGCGTGGGGAGA
TCTGCCTCCCGAGGTCATCGAGGCCATGCTCGCGGCCGGGGCAGGCGGTA
TGTCCAAGTCGATTTCCTGGGATCACAGCTATGCGGCAGGCCTCAAGATG
AGGGCTGA
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