mRNA_S-dermatodea_contig12427.1514.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12427.1514.1
Unique NamemRNA_S-dermatodea_contig12427.1514.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Match: D8LEW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEW6_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 5.430e-113
Identity = 176/254 (69.29%), Postives = 195/254 (76.77%), Query Frame = 1 
Query:  265 PHAASLGWERYEDSRQAKVPQGLHQQHLVEFQGRTLCISS-----------SPQVSRVLEAVYEELGVSQRAAAALEVPWRVMCGGKFLRASEIAPAGSILRIWTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDEIRLQKWQETRERESRGEKVEETKTQSGIEEWHLGVPTWAEGAKPSYMKSRRKTVICQQWLDARKGRKAPQGSPPWWGCPRGRGCDFAHGKVSGKGGELTFLGQ 993
            P  + L  + +      K  Q  HQ HLVEFQGRTLC+S+           S + S VLE+V+  LGV + A   L+ PWR+MCGG+FL   +  P  S+LR+WTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDE+RLQKWQE RERESRGEKVEE KTQSGIE WHLGVPTWAEGAKPSYMK+RRKTVICQQWLDARK RKAPQG+PPWWGCPRGRGCDFAHGK   +G  L    Q
Sbjct:    7 PTMSPLAGDAFRLPHVEKQQQQQHQ-HLVEFQGRTLCVSAHTAFSNGDNGNSSRASSVLESVFAALGVPKSAVGRLQEPWRLMCGGRFLAPDQYVPPLSVLRVWTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDEVRLQKWQENRERESRGEKVEEEKTQSGIENWHLGVPTWAEGAKPSYMKTRRKTVICQQWLDARKDRKAPQGAPPWWGCPRGRGCDFAHGKEELRGKGLEEFNQ 259
[Close]
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Match: A0A835ZBA3_9STRA (SPRY domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBA3_9STRA)

HSP 1 Score: 201 bits (511), Expect = 6.820e-55
Identity = 114/212 (53.77%), Postives = 129/212 (60.85%), Query Frame = 1 
Query:  460 EVPWRVMCGGKFLRASEIAPAGSILRIWTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDE----------------------------IRLQKWQETRERESRG--------EKVEETKTQSGIEEWHLGVPTWAEGAKP------SYMKSRRKTVICQQWLDARKGRKAPQGSPPWWGCPRGRGCDFAHGKVSGKG 969
            ++ WR+M GG+FL   E  PA  ++R+WTGGLKGGKGGFGAMLRA AKQAG K T DFGACRDLQGRRLRHVNDE                            IRL+KWQE                E  E+T   SGIE WHLGVP+WAEG         SY+K RRKT +C+QWL+AR  R AP G+P WWGCPRGRGCDFAHG    KG
Sbjct:   64 QLGWRLMFGGRFL--DEAEPALPLVRLWTGGLKGGKGGFGAMLRAAAKQAGNKATRDFGACRDLQGRRLRHVNDEASHICRCPGNFKFFAARVQMDADAALRMIRLRKWQEEXXXXXXXXXXXXXXXEAPEQTP--SGIENWHLGVPSWAEGLNKQGKQAQSYLKPRRKTRVCKQWLEARAQRPAPDGAPAWWGCPRGRGCDFAHGDDELKG 271
[Close]
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Match: M4BHB1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BHB1_HYAAE)

HSP 1 Score: 192 bits (487), Expect = 5.090e-53
Identity = 113/230 (49.13%), Postives = 149/230 (64.78%), Query Frame = 1 
Query:  340 QHLVEFQGRTLCISSSPQVSR---VLEAVYEELGVSQRAAAALEVPWRVMCGGKFLRASEIAPAGSILRI-WTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDEIRLQKWQETRERESRGEKVE---------ETKTQSGIEEWHLGVPTWAEGAKPSYMKSRRKTVICQQWLDARKG-RKAPQGSPPWWGCPRGRGCDFAHGKVSGKGGELTFL 987
            Q LV +  RTL +S SP  +    ++  V +  GV    ++ L++    + G K    S I    +I+R    GGL+GGKGGFGAMLR+M K AGAK TTDFGACRDL GRRLRHVN E+ ++KW E  E+++RGE+ +         + +T+SGI  W+L  P+WAEG K S+MK RR TV+C+ WL AR+G R+AP G+P WWGCPRGR CDFAHG+   +G  LT L
Sbjct:    8 QFLVHW-NRTLSVSLSPSAATMDTIMSVVQQREGVP---SSLLDL---YVNGRKLEPTSPIPAFPTIIRARLRGGLRGGKGGFGAMLRSMGKSAGAKATTDFGACRDLHGRRLRHVNQEVAMRKWLE--EKDARGEREKKQVDERELMDEETRSGIPGWYLATPSWAEGVKKSHMKRRRNTVLCKSWLKAREGGRRAPSGAPRWWGCPRGRDCDFAHGQEELRGEGLTEL 228
[Close]
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Match: A0A225WZ16_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZ16_9STRA)

HSP 1 Score: 194 bits (492), Expect = 6.450e-53
Identity = 114/225 (50.67%), Postives = 142/225 (63.11%), Query Frame = 1 
Query:  340 QHLVEFQGRTLCIS---SSPQVSRVLEAVYEELGVSQRAAAALEVPWRVMCGGKFLRASEIAPAGSILRI-WTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDEIRLQKWQETRERESRGEK--VEETK-----TQSGIEEWHLGVPTWAEGAKPSYMKSRRKTVICQQWLDARKGRKAPQGSPPWWGCPRGRGCDFAHGKVSGKGGELT 981
            Q LV F  RTLC+S    S  VSR+   + +  GV    ++ L++    + G K   +S +    +I+R    GGL+GGKGGFGAMLR+M K +GAK TTDFGACRDL GRRLRHVN E+ L KWQ+  E  ++ EK  VEE +     T SGI  W+L  P+WAEG K SYMK RR TV+C  W  AR+G+  P G P WWGCPRGR CDFAHG+   +G  LT
Sbjct:    5 QFLVHF-NRTLCLSVPSCSATVSRLTSLLQQREGVP---SSLLDL---YVNGRKLSASSHVPSFPTIIRARLRGGLRGGKGGFGAMLRSMGKASGAKATTDFGACRDLHGRRLRHVNQEVALLKWQQDGEARAKREKDGVEEREILDEETPSGIPGWYLATPSWAEGVKKSYMKRRRNTVLCTSWQKAREGQDPPPGEPRWWGCPRGRNCDFAHGEEELRGESLT 222
[Close]
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Match: A0A662WT90_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WT90_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.360e-51
Identity = 111/227 (48.90%), Postives = 140/227 (61.67%), Query Frame = 1 
Query:  346 LVEFQGRTLCIS---SSPQVSRVLEAVYEELGVSQRAAAALEVPWRVMCGGKFLRASEIAPA-GSILRI-WTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDEIRLQKWQETRERESRGEK-------VEETKTQSGIEEWHLGVPTWAEGAKPSYMKSRRKTVICQQWLDARKG-RKAPQGSPPWWGCPRGRGCDFAHGKVSGKGGELTFL 987
            LV F  RTLC+S       V  +  AV    GV             +   G+ L AS + P+  +I+R    GGL+GGKGGFGAMLR+M K +GAK TTDFGACRDL GRRLRHVN E+ + KW++  E  +R E+       V + +T SGI  W+L  P+WAEG + SYMK RR T++C+ W  AR+G R APQG+P WWGCPRGR CDFAHG+   +G  LT L
Sbjct:    9 LVHF-NRTLCLSLAAGGASVDSLTRAVQTREGVPSELLD-------LYVDGRKLDASSVVPSFPAIIRARLRGGLRGGKGGFGAMLRSMGKGSGAKATTDFGACRDLHGRRLRHVNQEVAMHKWRQDGEARARREQDGVTEREVLDEETPSGIPGWYLATPSWAEGVRKSYMKRRRNTMLCKNWKQAREGGRTAPQGAPRWWGCPRGRDCDFAHGEEELRGEGLTDL 227
[Close]
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Match: A0A662WQ04_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQ04_9STRA)

HSP 1 Score: 187 bits (476), Expect = 8.090e-51
Identity = 111/227 (48.90%), Postives = 140/227 (61.67%), Query Frame = 1 
Query:  346 LVEFQGRTLCISSSPQ---VSRVLEAVYEELGVSQRAAAALEVPWRVMCGGKFLRASEIAPA-GSILRI-WTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDEIRLQKWQETRERESRGEK-------VEETKTQSGIEEWHLGVPTWAEGAKPSYMKSRRKTVICQQWLDARKG-RKAPQGSPPWWGCPRGRGCDFAHGKVSGKGGELTFL 987
            LV F  RTLC+S +     V  +  AV    GV             +   G+ L AS   P+  +I+R    GGL+GGKGGFGAMLR+M K +GAK TTDFGACRDL GRRLRHVN E+ + KW++  E  +R E+       V + +T SGI  W+L  P+WAEG + SYMK RR T++C+ W  AR+G R APQG+P WWGCPRGR CDFAHG+   +G  LT L
Sbjct:    9 LVHF-NRTLCLSLAADGACVDSLTRAVQTREGVPSELLD-------LYVDGRKLDASSAVPSFPAIIRARLRGGLRGGKGGFGAMLRSMGKGSGAKATTDFGACRDLHGRRLRHVNQEVAMHKWRQDGEARARREQDGITEREVLDEETPSGIPGWYLATPSWAEGVRKSYMKRRRNTMLCKNWKQAREGGRTAPQGAPRWWGCPRGRDCDFAHGEEELRGEGLTDL 227
[Close]
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Match: A0A833S1E5_PHYIN (Telomere stability C-terminal n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833S1E5_PHYIN)

HSP 1 Score: 187 bits (475), Expect = 9.880e-51
Identity = 109/228 (47.81%), Postives = 144/228 (63.16%), Query Frame = 1 
Query:  340 QHLVEFQGRTLCISSSPQ---VSRVLEAVYEELGVSQRAAAALEVPWRVMCGGKFLRASEIAPAGSILRI-WTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDEIRLQKWQETRERESRGEK-------VEETKTQSGIEEWHLGVPTWAEGAKPSYMKSRRKTVICQQWLDARKGRKAPQ-GSPPWWGCPRGRGCDFAHGKVSGKGGELTFL 987
            Q LV F  RTLC+S S     VS +   V +  GV    ++ L++    + G K   +S +    +I+R    GGL+GGKGGFGAMLR+  K +GA+ TTDFGACRDL GRRLRHVN E+ + KW+   E  ++ +K       + + +T SGI  W+L  P+WAEG K SYMK RR TV+C+ W+ AR+G+KAP  G+P WWGCPRGR CDFAHG+   +G  LT L
Sbjct:    6 QFLVHF-NRTLCVSLSSNAATVSGIASFVQQREGVP---SSLLDL---YVNGRKLDVSSHVPSFPTIIRARLRGGLRGGKGGFGAMLRSQGKASGARATTDFGACRDLHGRRLRHVNQEVAMHKWRHDAETRAKRDKDGIEDREIIDEETPSGIPGWYLATPSWAEGIKKSYMKRRRNTVLCKSWVKARQGKKAPPPGAPRWWGCPRGRDCDFAHGEEELRGEALTEL 226
[Close]
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Match: A0A0P1AAW7_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAW7_PLAHL)

HSP 1 Score: 187 bits (474), Expect = 1.260e-50
Identity = 107/227 (47.14%), Postives = 145/227 (63.88%), Query Frame = 1 
Query:  340 QHLVEFQGRTLCI---SSSPQVSRVLEAVYEELGVSQRAAAALEVPWRVMCGGKFLRASEIAPAGSILRI-WTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDEIRLQKWQETRERESRGEKVEETK------TQSGIEEWHLGVPTWAEGAKPSYMKSRRKTVICQQWLDARKG-RKAPQGSPPWWGCPRGRGCDFAHGKVSGKGGELTFL 987
            Q+LV F  RTLC+   SS+  VSR+   + ++  V    ++ L++    + G K   +S+I    +I+R    GGL+GGKGGFGAMLR M K +G++ TTDFGACRDL GRRLRHVN E+ + KW +  E  ++ +  +E +      T SGI  W+L  P+WAEG K SYMK+RR T++C+ WL AR+G R  P G+P WWGCPRGR C FAHG+   +G  LT L
Sbjct:    4 QYLVHF-NRTLCVRLTSSAATVSRITSIIQQQECVP---SSLLDL---YVNGRKLNLSSQIPSFPTIIRARLRGGLRGGKGGFGAMLRIMGKASGSRATTDFGACRDLHGRRLRHVNQEVAMHKWHQDAESRNKRKAADEDREIIEEETPSGIPGWYLATPSWAEGIKKSYMKTRRNTILCKSWLKAREGGRSPPIGAPRWWGCPRGRDCTFAHGEEELRGKALTEL 223
[Close]
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Match: K3WRR0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRR0_GLOUD)

HSP 1 Score: 186 bits (473), Expect = 1.270e-50
Identity = 107/223 (47.98%), Postives = 145/223 (65.02%), Query Frame = 1 
Query:  346 LVEFQGRTLCISSSPQVSRVLEAVYEELGVSQRAAAALEVPWRVMCGGKFLRASEIAPAGSIL---RIWTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDEIRLQKWQE---TRERESR----GEKVEETKTQSGIEEWHLGVPTWAEGAKPSYMKSRRKTVICQQWLDARK-GRKAPQGSPPWWGCPRGRGCDFAHGKVSGKGGELT 981
            LV+F  RTLCIS  P+ +  + ++ +++   +   A L     +   G+ L    + P   ++   R+ +GGL+GGKGGFGAMLR+  K AGAK TT FGACRDL GRRLRHVN EI +QKW+E   TRE+  +     +++ + +T SGI  W+L +P+WAEG K SYMK RR T++C+ WL AR+ GR AP  +P WWGCPRGR CDFAHG+   +G  LT
Sbjct:    8 LVQF-NRTLCISL-PRANATVASIKKKIQSREGVPADL---LDLYANGRKLLEDALVPCLPVMVRARL-SGGLRGGKGGFGAMLRSSGKGAGAKATTSFGACRDLNGRRLRHVNQEIAVQKWREDGETREQRKKLGVTDQEIMDEETPSGIPGWYLAMPSWAEGVKKSYMKRRRNTIMCKSWLQARENGRTAPPNAPRWWGCPRGRDCDFAHGEEELRGAGLT 224
[Close]
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Match: H3GXJ2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXJ2_PHYRM)

HSP 1 Score: 187 bits (474), Expect = 1.310e-50
Identity = 110/226 (48.67%), Postives = 142/226 (62.83%), Query Frame = 1 
Query:  340 QHLVEFQGRTLCIS---SSPQVSRVLEAVYEELGVSQRAAAALEVPWRVMCGGKFLRASEIAPAGSILRI-WTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQGRRLRHVNDEIRLQKWQETRERESRGEK-------VEETKTQSGIEEWHLGVPTWAEGAKPSYMKSRRKTVICQQWLDARKGRKAP-QGSPPWWGCPRGRGCDFAHGKVSGKGGELT 981
            Q LV F  RTLC+S    +  V R+   V +  GV    A+ L++    + G K    + +    +I+R    GGL+GGKGGFGAMLR+M K +GAK TT+FGACRDL GRRLRHVN E+ + KWQ+  E  S+ EK       + + +T SGI  W+L  P+WAEG K SYMK RR TV+C+ W  AR+G +AP  G+P WWGCPRGR CDFAHG+   +G  LT
Sbjct:    7 QFLVHF-NRTLCLSLDAGAASVERLASFVQQREGVP---ASLLDL---YVDGRKLDDLAHVPSFPAIIRARLRGGLRGGKGGFGAMLRSMGKASGAKATTNFGACRDLHGRRLRHVNQEVAMSKWQQDGEARSKREKDGVTDQEMMDEETPSGIPGWYLATPSWAEGVKKSYMKRRRNTVLCKSWAKAREGGRAPPDGAPRWWGCPRGRQCDFAHGEQELRGEGLT 225
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12427.1514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW6_ECTSI5.430e-11369.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBA3_9STRA6.820e-5553.77SPRY domain-containing protein n=1 Tax=Tribonema m... [more]
M4BHB1_HYAAE5.090e-5349.13Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A225WZ16_9STRA6.450e-5350.67Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A662WT90_9STRA1.360e-5148.90Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662WQ04_9STRA8.090e-5148.90Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A833S1E5_PHYIN9.880e-5147.81Telomere stability C-terminal n=1 Tax=Phytophthora... [more]
A0A0P1AAW7_PLAHL1.260e-5047.14Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
K3WRR0_GLOUD1.270e-5047.98Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3GXJ2_PHYRM1.310e-5048.67Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12427contigS-dermatodea_contig12427:1753..7014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.6
Seed ortholog evalue8.1e-95
Seed eggNOG ortholog2880.D8LEW6
EggNOG free text desc.cell cycle
EggNOG OGsKOG2242@1,KOG2242@2759,KOG2827@1,KOG2827@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSPRY domain
Ec32 orthologEc-21_005810.1
Exons3
Model size1005
Cds size801
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12427.1514.1prot_S-dermatodea_contig12427.1514.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12427 1957..7014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.695934-UTR-S-dermatodea_contig12427:1752..19561622924247.695934-UTR-S-dermatodea_contig12427:1752..1956Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12427 1753..1956 +
1694079123.0081098-UTR-S-dermatodea_contig12427:1752..19561694079123.0081098-UTR-S-dermatodea_contig12427:1752..1956Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12427 1753..1956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.7089186-CDS-S-dermatodea_contig12427:1956..23581622924247.7089186-CDS-S-dermatodea_contig12427:1956..2358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12427 1957..2358 +
1694079123.0204058-CDS-S-dermatodea_contig12427:1956..23581694079123.0204058-CDS-S-dermatodea_contig12427:1956..2358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12427 1957..2358 +
1622924247.7167418-CDS-S-dermatodea_contig12427:3773..38801622924247.7167418-CDS-S-dermatodea_contig12427:3773..3880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12427 3774..3880 +
1694079123.033333-CDS-S-dermatodea_contig12427:3773..38801694079123.033333-CDS-S-dermatodea_contig12427:3773..3880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12427 3774..3880 +
1622924247.7246277-CDS-S-dermatodea_contig12427:6722..70141622924247.7246277-CDS-S-dermatodea_contig12427:6722..7014Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12427 6723..7014 +
1694079123.048602-CDS-S-dermatodea_contig12427:6722..70141694079123.048602-CDS-S-dermatodea_contig12427:6722..7014Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12427 6723..7014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12427.1514.1

>prot_S-dermatodea_contig12427.1514.1 ID=prot_S-dermatodea_contig12427.1514.1|Name=mRNA_S-dermatodea_contig12427.1514.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=267bp
MAMVATSTPPQAAVVCWALPPHAASLGWERYEDSRQAKVPQGLHQQHLVE
FQGRTLCISSSPQVSRVLEAVYEELGVSQRAAAALEVPWRVMCGGKFLRA
SEIAPAGSILRIWTGGLKGGKGGFGAMLRAMAKQAGAKPTTDFGACRDLQ
GRRLRHVNDEIRLQKWQETRERESRGEKVEETKTQSGIEEWHLGVPTWAE
GAKPSYMKSRRKTVICQQWLDARKGRKAPQGSPPWWGCPRGRGCDFAHGK
VSGKGGELTFLGQTSA*
back to top

mRNA from alignment at S-dermatodea_contig12427:1753..7014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12427.1514.1 ID=mRNA_S-dermatodea_contig12427.1514.1|Name=mRNA_S-dermatodea_contig12427.1514.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5262bp|location=Sequence derived from alignment at S-dermatodea_contig12427:1753..7014+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCGTCCCGTGTTGCTTGTACCTGGACAGCGTGGCAGCGTGCGTGGTCTA
TATTACTTTCTTCGCACACTCTGTGTAGTTGCGCCTTAGATTTCCGCACA
CATTCTTCTGGTCTGCCAGCAAGGGGGGGCCCTCTTTCAAAATCTCCCAA
CAGCAGACGACAGTCCCGCGAACGCTGCCCTTTGCGCTCTTGCTCGTCAC
AGCCATGGCGATGGTGGCCACGAGCACACCGCCGCAGGCAGCGGTGGTAT
GCTGGGCCCTGCCTCCCCACGCGGCATCATTGGGGTGGGAGCGCTACGAA
GACAGCCGACAGGCTAAAGTACCACAGGGACTCCACCAGCAGCACCTCGT
CGAGTTTCAAGGGAGAACCCTGTGCATCTCTAGCTCTCCCCAGGTGTCCC
GGGTGCTCGAAGCCGTGTATGAGGAGCTCGGCGTGTCGCAGAGGGCAGCG
GCCGCCTTGGAGGTGCCATGGCGCGTCATGTGCGGTGGGAAATTCTTGAG
GGCCTCGGAGATCGCCCCCGCCGGCAGCATCCTGAGGATCTGGACCGGCG
GCCTTAAGGGGGGGAAAGGTGGTTTCGGCGCCATGCTCCGAGCGATGGCG
AAGCAGGCGAGATAGAGCTGTCCTATGCTCTTATGATTTGACCTTTGCTC
TTACGCTACAGTATCGTACGGGTATGTACTCGTTGCGTACGGTACAAGAG
CGCGTTTTGAAGGTTCGCTCCATAGCGGGCAGGGAGGTGGGGGGGGGGTG
ACTTTCCTCTGTGCTACTCTGAATGTTCTATATACGGAGGTGGCGAAGAT
TGAAGCGATCAAAATGATTCATGAATAGAGCTATCATGTCATTTCCTCGA
AAAGTGCACTCAGTTCCGACACGGTAAAAATCTGCCGCATCGAGGACATC
GAGGACATCCCCGTGGAGTACTATTATATGATACGCTTGTGACTCCGGAT
ACCTCTGTGCGATTTTTTTTTACAATTGACAGCATATAACTATTACTATT
TAACCTCTAAGGCAGCGAAAGAGACAGGAGAGTTGACAGTAGTAGATGGG
AGTACGCCATCGTACGCTTTTTTATAGTACGATGAGAATAGAGAGCTCTA
CAGCGTGGAATCATCCTACGGTAGCGTGTGTGCATTACAGGTATAGGTAA
TCCGCTTCGTTGCACGAATCGAGCCGCGTTTTTCACTTTTTCAAGGGACT
AGGGTTACGGAGGTACACTATAAATAAAGTAATCAGGACCAAATTGATAT
CACGACCATAAATACGCAACTACCTGGTACTACTGTTCCAACCATGAATA
CTGTACCCATAACAGCACCAAAAACTATGAACCAAAAAAACAACACGAGA
AAGGCCTGGCCTACTCCATGATATGATATGATGCAAACACCGACCGTGAA
TACCGTATTGTTCCAGCCTGTGTTGTTTTGCTAAGCTAAGATTTGTGACA
AATTTTGACCTGTTCACCCATCGTCCTCCGCAGTAGTAGTACTAATACTA
GTATAATACTAGTATAATACTAGTATAATAGTAGTGTAGTAGTAGTAGTA
GTAGTAGTCGTGGTGGTAGTCGTGGTGGTGGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTCGTCGTCGTCGTGGTAGTAGTCGCCTGATTCA
GATTGTCTACCCAACGACAACATACTCGAGAGGTATGATAGCTTTCTGTG
TTACGGTCCGCTTCCGCTTTTTAGGCGAACATTGTTTTGTGGCCATCCGA
TCGATCCAAAAGTTGGTATCGTGAGCCATGGAGCCGTTCTAGAGGTGGCC
CCTGTGCATCAGCGGGCCCCGCTACCGTCGGGTGCCTCGGTGAAACCAGT
AAACATGGTGCATAAGAAACCAGCAACAACGTGCTGCTTGCATGACGCGC
CTAAAAATGTCCTCCGATCCACGTTCAATCGCAACTATACTAGAAGAGCG
TTCATATTTATAAAATACAAGAGTTAATATTTACGAATGCCTTTCTTTGC
CTTGCTGTGTTCTGAGTGCAGGCGGGCGCGAAGCCGACGACGGACTTCGG
AGCTTGCCGCGACCTGCAGGGGAGGCGGCTCCGCCACGTGAACGACGAGA
TTCGACTCCAGAAGTGGCAGGAAACCAGGTGATGATTTGTCATGGTCATG
GTGATGGTGTGATGGTGGATGGTGGATGGTTGATGGTGATGGGTTATGGT
GGTGATGATGGTGATGATGTGATGGTGATTGATGGTGGTGGTGACCATGA
CGATGGTCTCTCATAAAAAATATTCAACATACTGTATTCTGTATCAATGT
CTAGCTCCAGCAGTCACATGTATATGCTCCACCGATTCAGGTGGACCTAG
GAAAATATCAAATATCAAGGGGAAACAACAGACAGTCGCTAACACATATG
GATGCAATCTTCCCGCTGCTGATTCGTCGCAGTACACTATCTTATTAATT
AATGCAACAATGACCGATTGTGTATATTGATTTTAGACAAGGATACTGTC
TGTGTGATGCCAAACAACTTGATGTTTGTGTTGAGCGATATTTTTTTTAT
AAGTTTGTGTTGAGCGAAAAAAATACTACACCCATGACTGCACAGCGAAA
ACACAGCAGCGACACGCACATCAGCGACACGAACAGCAGCGACACGAACA
GCAGCGACACGCACAGCAGCGACACGCACAGCAGCGACATGCACAGTAGT
AGCCCGACCGCGTTCACCCTCCNNNNNNNNNNGCGTTCCGTCGGCATATC
GTCTTGCCAACGCACGCCTCACACGGGCGTAGCCGTGGCTTTCCACTAGT
TCTAACGAAAAACAAGATCAACATGAGCAAGACCTGAAAGGCCCTCCCAG
AGAGCTGGAGAGATCCCACGCGAAGGCAACGCCTGTGTTACGTCAGAGCA
CTGGAGGACTTGTGGGTTGCACAAAGACACTCACACGAGTCAAGGTGTTG
CATTTCGCGGTGCAGGCGTGTTCGAAAATGAAACCGTCTCTAGGGATGTG
AGCGCGATGCTCCGATTAAAAAACAGGGATGGGGGGAACCTGGCACCGAC
CCAAGAACCTATCATACCGGTTATAACCGGAAATCAGCTTTTGACGGAAC
CTATTATACCGGTTATAAACCCCAAAAAGCGGGGATGAAAAACGCCCGTC
CCCGGGGTTTCCAAGCCTTTTCTGTTTCGTACGCTGCGGATTCTTTGGGC
ATTGTTGCACAGCCCCAAACGTGTTGTGATTACATGCTGAAATGTGTTTT
TCGTCAAGAGGGGTGTTTGTTTTGCGTTGTTACACCTTGTTTGACGGTGA
CCCACAATATATTGCTCAGCCGAAAAAGAAAAAAGGCAAAAAGCGCAGGC
TTGGAGGAGAGGGGGCCCAGTATAACCCCGCTGTTCCATATAACCTATTA
TACGGGGCAAGGTTGGAACCGGTTATAACCGGTTACCGGGTAACTGTTCC
CCCCATCCCTGCTAAAAAACGCTTGTGAGTCGAGTCTCTGCCTCACGGGA
CCATTTCACACAGAGAGCTGGTATCATACAGTATATTCTGTATTTCACTC
GAACCGCGCGCCCCGTGGTTGAACTGGTTGACCAACAACCCAGTAGGCGG
AGGACCCGGGTTCAAATCCCGGCAGAGTCGATGTTTATTTATTTTATCCA
CCTCCGCTGCGGAAAGCTTTCGCGAGAGCTTGAGTAAGAAAAAAATACGA
GAAGTCGGCGAGCTGTGGGAGTGCCGAACCCAATGTGCATTCGCGATAAA
ATCAAAGGTGAGAACCGGGGATTAGAGGGATGGGATGACCCCTTGTGACC
ACAGACGGACCTCGGAAAAGCAAGTCTATCGTATATGTGCCAACAACAAC
AACAACTCTGCATGGTCTACAAGTAGCATGCAGACAATCTGTTATGTTTT
GTTTTAACAGCAGTCGCCGTTCGTCATCAACACATACGCACGCGTGACGC
GTTGCCCAGATGGGCAGCGGTGTGTGCCGATACTCAAGCAGCAAAAATTC
CCCGCTACAACAGCCAGGCCAACACGGCGCGCCCTAGGGTAACTCGCAAG
GCCTGCGTCTGCACGGCGGTGTCGCCTGCTTTTGGCCGTCTTCCATGGCC
TCCGTTTTTTATTTTCTTGCATGTGTCCCGCGCAAACCTGTTTTTCCATA
GTAAGGAGGCGTCATCGCCGATGTATGCGTGTCACAAACCCCTCCCATGA
AGAGTTACAACCTTTCCCATGAAAAGTTACGGACTAAAGATATTTTCAGT
GGCCTGTCGAGCGCGCATCCAGATGGTTATGAGGTCACTCTCAGCAAATC
GCGGGCACCTGCTGTGCTACCTGACGCCCGACTCCGACGGCTTCCCCGCC
ATGCTCAAGGCACTATTTCTTTCTCAGCCTCCGTATGGTCGTCCCGCTCC
TCATCCTATAACCGCTGAAACAAGTGTCATATTTTTAAAACACGGAGCGA
AAGTTGGGGTCCAATATTTTTGTAGGAGAAAATATTACCCAACCTAACTC
AGTGGAGGTCTACGTTATGTACGGTGCTGCCACCCCCCCACCCTCCCCCC
TCGCGCGGAGATGAGAGTCCCTTTGCGGTACTTGGAGCATAGTCACGCCT
ACTGAATGTGCAAATTTGCTTGGTTTACCCGGCATGTCTAATCACCCCAT
GGTATATCGGTTTGGCATCGAAAAAGCGCAAGGGTGGTGACTATGGTTGC
AGCTGTTAGCATCCTTGTGAAAGGCAGCCTGGCGGGCGAAAACCCGGCAT
GCCGCTCCATCTCGGAACTGCTGGGACGTGTGGTCTCTATACAGTGTGTC
CGTCTGGATACAACATGCGCTAAGCATTAGTACGCCCCTCCCTCCCCCCT
CGCCTTCCTCCCGAGGACGCGTGGCCGATGGGCCACCACCAACTAAGGCA
TGCAAACCTTGAATACCCCCCCCCCCCACCCCTCCACCTCCCCTAATTCC
GCGCAAAAAACGCCGCCCAGGGAACGAGAAAGCCGGGGCGAGAAGGTCGA
AGAGACCAAGACCCAATCAGGGATAGAGGAATGGCATCTCGGAGTGCCGA
CCTGGGCGGAGGGTGCGAAGCCCTCCTACATGAAGAGCCGCCGCAAGACG
GTGATCTGCCAACAGTGGCTGGACGCTCGCAAGGGTAGGAAGGCCCCCCA
GGGTTCGCCTCCCTGGTGGGGCTGCCCGCGAGGGAGGGGTTGCGACTTCG
CTCATGGCAAGGTGAGTGGGAAGGGGGGGGAGCTGACTTTCCTCGGGCAA
ACGTCTGCGTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12427:1753..7014+

>mRNA_S-dermatodea_contig12427.1514.1 ID=mRNA_S-dermatodea_contig12427.1514.1|Name=mRNA_S-dermatodea_contig12427.1514.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at S-dermatodea_contig12427:1753..7014+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGATGGTGGCCACGAGCACACCGCCGCAGGCAGCGGTGGTATGCTG
GGCCCTGCCTCCCCACGCGGCATCATTGGGGTGGGAGCGCTACGAAGACA
GCCGACAGGCTAAAGTACCACAGGGACTCCACCAGCAGCACCTCGTCGAG
TTTCAAGGGAGAACCCTGTGCATCTCTAGCTCTCCCCAGGTGTCCCGGGT
GCTCGAAGCCGTGTATGAGGAGCTCGGCGTGTCGCAGAGGGCAGCGGCCG
CCTTGGAGGTGCCATGGCGCGTCATGTGCGGTGGGAAATTCTTGAGGGCC
TCGGAGATCGCCCCCGCCGGCAGCATCCTGAGGATCTGGACCGGCGGCCT
TAAGGGGGGGAAAGGTGGTTTCGGCGCCATGCTCCGAGCGATGGCGAAGC
AGATGGCGATGGTGGCCACGAGCACACCGCCGCAGGCAGCGGTGGTATGC
TGGGCCCTGCCTCCCCACGCGGCATCATTGGGGTGGGAGCGCTACGAAGA
CAGCCGACAGGCTAAAGTACCACAGGGACTCCACCAGCAGCACCTCGTCG
AGTTTCAAGGGAGAACCCTGTGCATCTCTAGCTCTCCCCAGGTGTCCCGG
GTGCTCGAAGCCGTGTATGAGGAGCTCGGCGTGTCGCAGAGGGCAGCGGC
CGCCTTGGAGGTGCCATGGCGCGTCATGTGCGGTGGGAAATTCTTGAGGG
CCTCGGAGATCGCCCCCGCCGGCAGCATCCTGAGGATCTGGACCGGCGGC
CTTAAGGGGGGGAAAGGTGGTTTCGGCGCCATGCTCCGAGCGATGGCGAA
GCAGGCGGGCGCGAAGCCGACGACGGACTTCGGAGCTTGCCGCGACCTGC
AGGGGAGGCGGCTCCGCCACGTGAACGACGAGATTCGACTCCAGAAGTGG
CAGGAAACCAGGCGGGCGCGAAGCCGACGACGGACTTCGGAGCTTGCCGC
GACCTGCAGGGGAGGCGGCTCCGCCACGTGAACGACGAGATTCGACTCCA
GAAGTGGCAGGAAACCAGGGAACGAGAAAGCCGGGGCGAGAAGGTCGAAG
AGACCAAGACCCAATCAGGGATAGAGGAATGGCATCTCGGAGTGCCGACC
TGGGCGGAGGGTGCGAAGCCCTCCTACATGAAGAGCCGCCGCAAGACGGT
GATCTGCCAACAGTGGCTGGACGCTCGCAAGGGTAGGAAGGCCCCCCAGG
GTTCGCCTCCCTGGTGGGGCTGCCCGCGAGGGAGGGGTTGCGACTTCGCT
CATGGCAAGGTGAGTGGGAAGGGGGGGGAGCTGACTTTCCTCGGGCAAAC
GTCTGCGTAGGGAACGAGAAAGCCGGGGCGAGAAGGTCGAAGAGACCAAG
ACCCAATCAGGGATAGAGGAATGGCATCTCGGAGTGCCGACCTGGGCGGA
GGGTGCGAAGCCCTCCTACATGAAGAGCCGCCGCAAGACGGTGATCTGCC
AACAGTGGCTGGACGCTCGCAAGGGTAGGAAGGCCCCCCAGGGTTCGCCT
CCCTGGTGGGGCTGCCCGCGAGGGAGGGGTTGCGACTTCGCTCATGGCAA
GGTGAGTGGGAAGGGGGGGGAGCTGACTTTCCTCGGGCAAACGTCTGCGT
AG
back to top