mRNA_S-dermatodea_contig12425.1513.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12425.1513.1
Unique NamemRNA_S-dermatodea_contig12425.1513.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12425.1513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12425contigS-dermatodea_contig12425:191..662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.543159-CDS-S-dermatodea_contig12425:190..5021622924247.543159-CDS-S-dermatodea_contig12425:190..502Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12425 191..502 +
1694079122.896221-CDS-S-dermatodea_contig12425:190..5021694079122.896221-CDS-S-dermatodea_contig12425:190..502Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12425 191..502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.5543213-UTR-S-dermatodea_contig12425:502..6621622924247.5543213-UTR-S-dermatodea_contig12425:502..662Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12425 503..662 +
1694079122.9118502-UTR-S-dermatodea_contig12425:502..6621694079122.9118502-UTR-S-dermatodea_contig12425:502..662Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12425 503..662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12425.1513.1prot_S-dermatodea_contig12425.1513.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12425 191..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12425.1513.1

>prot_S-dermatodea_contig12425.1513.1 ID=prot_S-dermatodea_contig12425.1513.1|Name=mRNA_S-dermatodea_contig12425.1513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MCVTARIPLFRRRGKTVRETKTTGDIPNIIQQVLFVASRRQLKCSFTFKI
LSELSHVNIFILQVSSTSYFAYRPCSKFKTHSGPASPSARILDGQFKESS
ITL*
back to top

mRNA from alignment at S-dermatodea_contig12425:191..662+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12425.1513.1 ID=mRNA_S-dermatodea_contig12425.1513.1|Name=mRNA_S-dermatodea_contig12425.1513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=472bp|location=Sequence derived from alignment at S-dermatodea_contig12425:191..662+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCGTAACAGCACGGATCCCACTTTTTAGAAGACGTGGCAAGACCGT
CCGAGAAACTAAGACAACGGGAGATATACCAAATATAATACAACAAGTGC
TCTTCGTTGCATCAAGACGTCAACTCAAATGCTCGTTCACCTTCAAGATA
CTGTCTGAGCTATCACATGTAAACATATTCATTTTACAGGTATCTTCTAC
TTCTTATTTTGCGTACCGTCCCTGTTCAAAATTCAAAACACACAGCGGAC
CAGCCAGCCCTTCAGCGCGCATACTAGACGGGCAGTTCAAAGAATCCTCG
ATTACTCTGTAGGTGTCCATAATAAGAACAAGCCATATCAGTGAAACACG
CAATCGTGCAAAAACGCGGTGTTGGGATCTGTGGATACGGCCTACGGGTT
TTCAAGCTTTTTTCCAAAGCACGTACCTGGTATAATATAGTTGTTGCTTT
ACCCATGAGCCCGTCCCCCCGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12425:191..662+

>mRNA_S-dermatodea_contig12425.1513.1 ID=mRNA_S-dermatodea_contig12425.1513.1|Name=mRNA_S-dermatodea_contig12425.1513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig12425:191..662+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCGTAACAGCACGGATCCCACTTTTTAGAAGACGTGGCAAGACCGT
CCGAGAAACTAAGACAACGGGAGATATACCAAATATAATACAACAAGTGC
TCTTCGTTGCATCAAGACGTCAACTCAAATGCTCGTTCACCTTCAAGATA
CTGTCTGAGCTATCACATGTAAACATATTCATTTTACAGGTATCTTCTAC
TTCTTATTTTGCGTACCGTCCCTGTTCAAAATTCAAAACACACAGCGGAC
CAGCCAGCCCTTCAGCGCGCATACTAGACGGGCAGTTCAAAGAATCCTCG
ATTACTCTGTAGATGTGCGTAACAGCACGGATCCCACTTTTTAGAAGACG
TGGCAAGACCGTCCGAGAAACTAAGACAACGGGAGATATACCAAATATAA
TACAACAAGTGCTCTTCGTTGCATCAAGACGTCAACTCAAATGCTCGTTC
ACCTTCAAGATACTGTCTGAGCTATCACATGTAAACATATTCATTTTACA
GGTATCTTCTACTTCTTATTTTGCGTACCGTCCCTGTTCAAAATTCAAAA
CACACAGCGGACCAGCCAGCCCTTCAGCGCGCATACTAGACGGGCAGTTC
AAAGAATCCTCGATTACTCTGTAG
back to top