mRNA_S-dermatodea_contig12421.1511.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12421.1511.1
Unique NamemRNA_S-dermatodea_contig12421.1511.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12421.1511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12421contigS-dermatodea_contig12421:2253..2812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size560
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.5027122-UTR-S-dermatodea_contig12421:2252..23711622924247.5027122-UTR-S-dermatodea_contig12421:2252..2371Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12421 2253..2371 +
1694079122.87751-UTR-S-dermatodea_contig12421:2252..23711694079122.87751-UTR-S-dermatodea_contig12421:2252..2371Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12421 2253..2371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.5139413-CDS-S-dermatodea_contig12421:2371..28121622924247.5139413-CDS-S-dermatodea_contig12421:2371..2812Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12421 2372..2812 +
1694079122.8862054-CDS-S-dermatodea_contig12421:2371..28121694079122.8862054-CDS-S-dermatodea_contig12421:2371..2812Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12421 2372..2812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12421.1511.1prot_S-dermatodea_contig12421.1511.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12421 2372..2812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12421.1511.1

>prot_S-dermatodea_contig12421.1511.1 ID=prot_S-dermatodea_contig12421.1511.1|Name=mRNA_S-dermatodea_contig12421.1511.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=147bp
MTLHGLDTRDLYKKEGEFVPTIIHNVCRDTRQPNAPKLALILNPGALHGD
RIAFSTRARPSFIGQGNLLQLPVVAVLSIPLPYPSPAHDVKMKEERKKKV
KKKTKYTQKHTIIITLLRQEKQRRKDDTELTECTFARETLPTTRQGN
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mRNA from alignment at S-dermatodea_contig12421:2253..2812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12421.1511.1 ID=mRNA_S-dermatodea_contig12421.1511.1|Name=mRNA_S-dermatodea_contig12421.1511.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=560bp|location=Sequence derived from alignment at S-dermatodea_contig12421:2253..2812+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGGGCGTAGCGGTGGCTACCTACTATAATATGTTATTGAGACGTCGAAG
ATGGCAGCGTTGGGAAATCGGCTTTTTTCTTGCCACTGCGCCGCGACGCT
TTGATAATATGTCATAAGGATGACATTGCACGGGTTGGACACCAGAGATC
TATATAAAAAAGAGGGAGAGTTTGTCCCTACTATAATACACAATGTCTGT
CGGGACACACGGCAGCCAAATGCTCCCAAGCTCGCGCTCATCTTAAATCC
TGGGGCATTACACGGCGACCGTATCGCCTTTTCCACGCGCGCTAGGCCAT
CCTTCATTGGCCAAGGAAACCTACTGCAACTGCCGGTCGTTGCTGTACTA
AGCATACCCCTCCCCTACCCCTCCCCAGCACACGATGTGAAAATGAAAGA
AGAGAGAAAAAAAAAAGTGAAAAAGAAAACGAAATACACACAAAAACACA
CCATCATTATAACTCTCCTACGCCAAGAAAAACAACGCCGAAAAGATGAC
ACCGAGCTAACAGAATGCACCTTCGCTCGAGAGACCCTGCCCACAACTAG
ACAAGGGAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12421:2253..2812+

>mRNA_S-dermatodea_contig12421.1511.1 ID=mRNA_S-dermatodea_contig12421.1511.1|Name=mRNA_S-dermatodea_contig12421.1511.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at S-dermatodea_contig12421:2253..2812+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACATTGCACGGGTTGGACACCAGAGATCTATATAAAAAAGAGGGAGA
GTTTGTCCCTACTATAATACACAATGTCTGTCGGGACACACGGCAGCCAA
ATGCTCCCAAGCTCGCGCTCATCTTAAATCCTGGGGCATTACACGGCGAC
CGTATCGCCTTTTCCACGCGCGCTAGGCCATCCTTCATTGGCCAAGGAAA
CCTACTGCAACTGCCGGTCGTTGCTGTACTAAGCATACCCCTCCCCTACC
CCTCCCCAGCACACGATGTGAAAATGAAAGAAGAGAGAAAAAAAAAAGTG
AAAAAGAAAACGAAATACACACAAAAACACACCATCATTATAACTCTCCT
ACGCCAAGAAAAACAACGCCGAAAAGATGACACCGAGCTAACAGAATGCA
CCTTCGCTCGAGAGACCCTGCCCACAACTAGACAAGGGAACATGACATTG
CACGGGTTGGACACCAGAGATCTATATAAAAAAGAGGGAGAGTTTGTCCC
TACTATAATACACAATGTCTGTCGGGACACACGGCAGCCAAATGCTCCCA
AGCTCGCGCTCATCTTAAATCCTGGGGCATTACACGGCGACCGTATCGCC
TTTTCCACGCGCGCTAGGCCATCCTTCATTGGCCAAGGAAACCTACTGCA
ACTGCCGGTCGTTGCTGTACTAAGCATACCCCTCCCCTACCCCTCCCCAG
CACACGATGTGAAAATGAAAGAAGAGAGAAAAAAAAAAGTGAAAAAGAAA
ACGAAATACACACAAAAACACACCATCATTATAACTCTCCTACGCCAAGA
AAAACAACGCCGAAAAGATGACACCGAGCTAACAGAATGCACCTTCGCTC
GAGAGACCCTGCCCACAACTAGACAAGGGAAC
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