mRNA_S-dermatodea_contig12408.1507.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12408.1507.1
Unique NamemRNA_S-dermatodea_contig12408.1507.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12408.1507.1 vs. uniprot
Match: D7G3Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y9_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 5.260e-25
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 DFEPIFAQVRKLDGPGGHRTAELMKAYGEDLSQGLLKAGIRAYFAGLIPTIVFHHSSPGLASMERASLGDGPELSPDAAGPVL 249
            D+E IFAQVRKLD   G R+ EL  AY EDL+QGLLK+  ++YFA LIP IVFHHSSPGLASMER+ +GDG E SP   GP +
Sbjct:  689 DYELIFAQVRKLD-ESGQRSIELQAAYAEDLNQGLLKSRTKSYFADLIPRIVFHHSSPGLASMERSLMGDGAEPSPVTPGPTI 770
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12408.1507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Y9_ECTSI5.260e-2565.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12408contigS-dermatodea_contig12408:2445..6588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3.2e-21
Seed eggNOG ortholog2880.D7G3Y9
KEGG koko:K18412,ko:K19983
GOsGO:0000145,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0008104,GO:0008150,GO:0008289,GO:0009987,GO:0016020,GO:0016192,GO:0017016,GO:0017048,GO:0017049,GO:0019899,GO:0031267,GO:0031503,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0046903,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051601,GO:0051641,GO:0070727,GO:0071944,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936
EggNOG free text desc.exocyst localization
EggNOG OGsKOG2148@1,KOG2148@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size255
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12408.1507.1prot_S-dermatodea_contig12408.1507.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12408 2447..6588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.2144113-CDS-S-dermatodea_contig12408:2446..25871622924247.2144113-CDS-S-dermatodea_contig12408:2446..2587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12408 2447..2587 -
1694079122.6489396-CDS-S-dermatodea_contig12408:2446..25871694079122.6489396-CDS-S-dermatodea_contig12408:2446..2587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12408 2447..2587 -
1622924247.224194-CDS-S-dermatodea_contig12408:4823..49101622924247.224194-CDS-S-dermatodea_contig12408:4823..4910Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12408 4824..4910 -
1694079122.661306-CDS-S-dermatodea_contig12408:4823..49101694079122.661306-CDS-S-dermatodea_contig12408:4823..4910Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12408 4824..4910 -
1622924247.2329242-CDS-S-dermatodea_contig12408:6564..65881622924247.2329242-CDS-S-dermatodea_contig12408:6564..6588Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12408 6565..6588 -
1694079122.671253-CDS-S-dermatodea_contig12408:6564..65881694079122.671253-CDS-S-dermatodea_contig12408:6564..6588Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12408 6565..6588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12408.1507.1

>prot_S-dermatodea_contig12408.1507.1 ID=prot_S-dermatodea_contig12408.1507.1|Name=mRNA_S-dermatodea_contig12408.1507.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
DFEPIFAQVRKLDGPGGHRTAELMKAYGEDLSQGLLKAGIRAYFAGLIPT
IVFHHSSPGLASMERASLGDGPELSPDAAGPVLI
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mRNA from alignment at S-dermatodea_contig12408:2445..6588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12408.1507.1 ID=mRNA_S-dermatodea_contig12408.1507.1|Name=mRNA_S-dermatodea_contig12408.1507.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4144bp|location=Sequence derived from alignment at S-dermatodea_contig12408:2445..6588- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACTTCGAACCCATTTTCGCTCAGGTAAGCGTACAAGTGCAAGTATATCT
TGATTAATCAATAGCACTTTGGACGTTTTTTAATAGCTATTTAGAGTTGT
CCTTTGATGCGCAGAAGTTGATGCCAAAAAGTTCATAGCGATTCCAGAGA
GGACCTTGTAAACAAGAGTTGAAAGAGTAGGGATTGCACCTCACAGGCGT
GTAGCCTAAAGTACCTACTATCACAGTAGTCTTGATGAATTACTATTATA
CTGCTGTAGCGCTTTGCACTTTTTTTGTTTTGAATTTAGAGTGGAGCTCT
TGATGCCAAATCGATAGGGCTTACAGAGTACCTGGTAGTAGTTTGAAGCT
CATTGTACCTTTCGCCGGTTCGCACACCTCACGGGAGTTGCAAGTATATT
GTAGCCGTGGCTACCCACTGTAAACATATTAAGGGGGCAGGGGGCGAATG
TCCGGAGTGCACCGTTGTTTGCGGTTTTTGGTGGATTTAGTTTGTTTTTG
ATTGATTGTGATAGCACACGTATATCATAGCAGTAGCCGATTGGCTTCAT
CCGGCCCGACTTGTGGTGAGATGCTACTATAGAGCTCTGTACGCAAAGTG
AAGGAGGAGTGAAGTACTGTAATGAGATCTCTACTTGTACAATACTAATA
CTAATACTCTACACAATACACAATACACAATACGCGACACACAATACGCA
ATACACAATACGCAATACACAATACCAGGTACACAATAGACAGTAGTAGA
GTCACTGGTGCTCACTACGGCACTAGGCTATTTCAGTATTATAGCGGCTA
TCATCTATCATACGCCAGTGAGGTCCAGAGTATCACCATGATTGATTAAT
TTTGATTTGATTTGATTTGCACACGTATAGCCGATCGGCTTAATCCGACC
CGACTTGTGGTCAGACACGCAAAGAGTCAAGGAGAACTATAATACATAGT
ATGAATAGGTATAATACTGAAGTATGGATATGATAGGCAGTAAATACGCT
AAACGTCCTGTGAGGCGAAAAATCCTACTCTTTTCAACACTTGTTTATAA
TGCCCCCCTTTGAAAACACTGTGAATTATGGCTTCGATTTTGTTAGTGTT
TCACCGCTCAACTCTAAATCGCTATGATATTAATGCATTCTGCAGGAAAA
ATCGACTCTAAATCGCTAGTAAAAAACGTGCAAAGCGGTATGAATTAATG
TATGGACAAGAGAGACGAAATAGGACCCCGATATATATACTGTTAATAGT
AAAGAGAAACGCCACAAGAGGAATCGGAGTCGGAATCGGTCAATGCTCCC
TACAGGTATTAATAGTCTCTACACCAGGGTCCTTCCTGTGTCTCATATCT
CATGGCACGCAGGTGTTGTCATCATAACCCATCGGGTGTGCCGAATGTGA
TGCGATAGAAATGCTGCACTTCCGGGCGTTATGATACCATAGCTAGGGGT
GATTAGATCGGCGAATAAAAAAATGGGTTAAAAGTTATGTACGTGTACAG
TACGTGTGTATGTGTATGCATGTATCCTTAGAACCCATCGCGTGTGCCGA
ATGTAATAACACATAAATGCTTCACTTTCGGGGGTTAGCTCGGGGGGTGA
TTTCAGCGATAAAAAAGTTATTTAAAAATACGTACCTGGTACGTGTATGT
ATGTATGTATGTATGTATGTATCCTTAGGTTCGGAAGCTGGACGGGCCAG
GAGGGCACCGGACCGCGGAGCTGATGAAGGCCTACGGTGAAGATCTCAGC
CAGGGGCTGCTCAAGGTGAACTTTGTCATTTGATTTGATTGGTTATCGTT
CTGTAGTTTGGACCTCAGCGGTGACGGCCAAGGGGCTGCTCAAGCTGAAC
CTTGCCATTTGATTTGATTTATTATCGTTCTGGAGTTTGAGCCTCAGCGG
TGATGGCCAAGTGGCTGCTCAAGGTGAACCTTGGAACCTTGTCATTTGAT
TAATTATCGTCCTGTAGTTTGGACCTCAGCGGTGGCGGCCGAGGAGCTGC
TCAAGCTGAACCTTTTATGCGTACGTTCTCGTTGTGCGGTCTGGACCCAA
TCAGTGAGTAGCCTTGTTTTGATCGTGTTTTCATAGGGATAAGACAGCAG
GCTCTCGAGTTATTTATATCATACGATGAATTGTGTAAAAAACAGAGGTA
GGCCCCCTCTGTTTACGAGAGTCAGTTTGTGTCAAGTCCTTCTTTGTATG
TATTGAATATTAATAGTACTATATAGGTAATTCCATAGTTTTTTTTTCGG
TCTCTCGATTTGTCATCTGACTACGAGGAACGGGATGGGCAACCATTGGT
GGGCCCGTCGGTTGTACGTGTGATAATCGATAAATCAATCAATCAATCAA
TCAAATCAACCACTCACTGACTAATCGATCAACCAAGCAATCAAACCAAT
AAATCAATCAATAAATGACTCACTACACAAACCAATCAATCAATCAAACA
ACCAATCAATCAATCAATCAATCAATCAATCAAAACAATATCTCACTGAC
TAATCGATCAACAAACCAATCAAACCAACCAATCAAACCAACAAATCACT
CAATACATAAATCAATCAATCTATCAATCAATCAATCAATCAATCAATCA
ATAAATCAACCCATCAACCCATCAATCAATCAATCAATCAATCAATCAAC
CAATCAATCAACAAATCAATAAATCAATCAACAAATCAATCAATCAATCA
ATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAAGGGATTGTG
GAGCTTTCGGGAGAAACGACACAAAACCCGAATTGTGTTTGCACGCACCG
TACAGCACACCTCGCGGTCGTAGCGCTTACACTACGATAGCACGTACGGT
ACAGTAACAGTACAGTAAAATATTATTACACTAGTTTTTCTATATCTGGG
GTACTAGTTCTTATTTATTTCGCCATAGTATGTACCAGGGACGGTACGGT
GTATAGTATAGTATAGTAGAAGTAAGATAAGAGTTCTGATTATTATAGCT
ATTTTTGTCCTTGACTATGATTCTTTGCTGTAGTGTCTGACCACAAGTCG
GATAGTTCGGATTAAGCCGATCGGCTATCATATACGTGTGCAAATCAAAT
CAATCAATAAATCAATCAGAGGATACTCATGCCCAAATCACCCCACCAGA
TGTGCGCCCATTCCATTCGTTTGATTTTATGTGATTTGATTGGTTGATCA
TCACACTTACAACGCTCGTGGTGAGATGAGAAATCGAGAACTCGAAAACA
GCTGTCATACTACCACGGAAGTGCCTATACAAGTAGTGTTATACTAAGAA
TGGTTTGTACCTGGTACGCTTTATGTGTTTTGTTTCTTTGCAAAAAAAGG
AGGTTAGCCTTGCCGCCTACGTGCTTTGGAAGACCCCCCCCCCCCCCTGA
AAAGAAAACGATTTCAAAGACAGAGCGAGCGTTCGGGTCCCACCTTTTCA
CAAGGGGAGATTGTTGGCGCTACACCTTTGGAGGCTCGCTTGTTGCGTGC
GGTGCTATGGTGTTCATGTCATGTATAATATCATGTTGTAAGGTTATGGT
ACAATTGTCTTTGTCCTGAGCGATATCCTCGTAAACATAGCGCATGTTTG
ATGTGCTTTGTGAGCCGAGAATGCTTGTTTGTATGATGCTATTTGTCGAG
GACCATACATTTAACAGGTCAAAATTTGCCACGAGTCTCAACCTAGAAAA
ACGAGAATAGGCCATTAATGGAATTATCGAGATTTCAAGGTCGATGTTCT
TGAATATGGCCGTATCTCGTGTTTTTTGTTTTTCATGATATTTTTGTTGA
TCTTTGGGTATTTATGGTATTAATATTAATATTATCGGAATAGTTGGGTA
TTAATCATTATTGGCTATACCATGAAATTGTACCTGTTAACTATGGCCCT
CCGTGATACTAGTATGAATACAGTACATGCTTTTGTCGTACTGATTCCCC
CACCCCCCGCGCCTCCTCCGCGTGCACAACACTGTTGTGGCGTTCTTTAA
GGCTGGGATCAGGGCCTATTTCGCGGGACTTATCCCCACCATCGTCTTCC
ACCACAGCAGTCCCGGCTTGGCTTCCATGGAGCGTGCTTCCCTAGGGGAT
GGGCCCGAATTGTCCCCGGACGCAGCCGGTCCCGTGCTGATCGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12408:2445..6588-

>mRNA_S-dermatodea_contig12408.1507.1 ID=mRNA_S-dermatodea_contig12408.1507.1|Name=mRNA_S-dermatodea_contig12408.1507.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig12408:2445..6588- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACTTCGAACCCATTTTCGCTCAGGACTTCGAACCCATTTTCGCTCAGGT
TCGGAAGCTGGACGGGCCAGGAGGGCACCGGACCGCGGAGCTGATGAAGG
CCTACGGTGAAGATCTCAGCCAGGGGCTGCTCAAGGTTCGGAAGCTGGAC
GGGCCAGGAGGGCACCGGACCGCGGAGCTGATGAAGGCCTACGGTGAAGA
TCTCAGCCAGGGGCTGCTCAAGGCTGGGATCAGGGCCTATTTCGCGGGAC
TTATCCCCACCATCGTCTTCCACCACAGCAGTCCCGGCTTGGCTTCCATG
GAGCGTGCTTCCCTAGGGGATGGGCCCGAATTGTCCCCGGACGCAGCCGG
TCCCGTGCTGATCGCTGGGATCAGGGCCTATTTCGCGGGACTTATCCCCA
CCATCGTCTTCCACCACAGCAGTCCCGGCTTGGCTTCCATGGAGCGTGCT
TCCCTAGGGGATGGGCCCGAATTGTCCCCGGACGCAGCCGGTCCCGTGCT
GATC
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