mRNA_S-dermatodea_contig12405.1506.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12405.1506.1
Unique NamemRNA_S-dermatodea_contig12405.1506.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12405.1506.1 vs. uniprot
Match: A0A6H5KG45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG45_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.510e-8
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:  256 PYRFPTPREAEWQRGLRSLLEASSTLADTFSAADAIGGVSLGTGLAGAGVPPADG 420
            PY  PT  +AE +R L SL+  + +LADTFSA+DAIGGVSLG GL GAG PPA G
Sbjct: 1134 PYSLPTHAQAERERELASLVADTWSLADTFSASDAIGGVSLGRGLDGAGPPPAQG 1188
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BLAST of mRNA_S-dermatodea_contig12405.1506.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 5.860e-5
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  295 RGLRSLLEASSTLADTFSAADAIGGVSLGTGLAGAGVPPADG 420
            RGL  LL  + +LADTFSA+DAIGGVSLG GL GAG PPA G
Sbjct: 1831 RGLAYLLTDTWSLADTFSASDAIGGVSLGRGLDGAGPPPAQG 1872
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12405.1506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG45_9PHAE3.510e-863.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH97_ECTSI5.860e-571.43Similar to chromosome fragility associated gene 1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12405contigS-dermatodea_contig12405:1361..1780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.1768441-CDS-S-dermatodea_contig12405:1360..17801622924247.1768441-CDS-S-dermatodea_contig12405:1360..1780Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12405 1361..1780 +
1694079122.6364648-CDS-S-dermatodea_contig12405:1360..17801694079122.6364648-CDS-S-dermatodea_contig12405:1360..1780Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12405 1361..1780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12405.1506.1prot_S-dermatodea_contig12405.1506.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12405 1361..1780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12405.1506.1

>prot_S-dermatodea_contig12405.1506.1 ID=prot_S-dermatodea_contig12405.1506.1|Name=mRNA_S-dermatodea_contig12405.1506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
EREPGAKFHTPSLGDLNADAVTAPSNAESYTLTAQEPAPKPEPESVPEMD
DNLGEREGMVTAGTTTTMLLPREEEDASQAPPRPPPYRFPTPREAEWQRG
LRSLLEASSTLADTFSAADAIGGVSLGTGLAGAGVPPADG
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mRNA from alignment at S-dermatodea_contig12405:1361..1780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12405.1506.1 ID=mRNA_S-dermatodea_contig12405.1506.1|Name=mRNA_S-dermatodea_contig12405.1506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig12405:1361..1780+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCGCGAACCCGGAGCAAAATTTCACACGCCTTCGCTCGGCGATTTGAA
CGCTGATGCGGTCACCGCGCCTTCAAACGCCGAATCATACACCTTGACAG
CACAGGAACCGGCACCCAAACCCGAACCCGAAAGCGTGCCTGAAATGGAC
GACAATCTAGGAGAGCGGGAGGGGATGGTAACTGCTGGGACGACGACGAC
GATGCTGCTGCCGCGGGAGGAGGAGGATGCGTCGCAAGCTCCCCCACGGC
CGCCACCGTACCGATTTCCCACACCGCGGGAGGCGGAGTGGCAGCGGGGA
CTGCGGTCCTTGTTGGAGGCCTCTAGCACCCTCGCGGACACGTTCTCTGC
CGCGGATGCTATCGGAGGCGTCTCCCTTGGGACGGGATTGGCGGGTGCTG
GGGTCCCGCCTGCGGACGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12405:1361..1780+

>mRNA_S-dermatodea_contig12405.1506.1 ID=mRNA_S-dermatodea_contig12405.1506.1|Name=mRNA_S-dermatodea_contig12405.1506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig12405:1361..1780+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCGCGAACCCGGAGCAAAATTTCACACGCCTTCGCTCGGCGATTTGAA
CGCTGATGCGGTCACCGCGCCTTCAAACGCCGAATCATACACCTTGACAG
CACAGGAACCGGCACCCAAACCCGAACCCGAAAGCGTGCCTGAAATGGAC
GACAATCTAGGAGAGCGGGAGGGGATGGTAACTGCTGGGACGACGACGAC
GATGCTGCTGCCGCGGGAGGAGGAGGATGCGTCGCAAGCTCCCCCACGGC
CGCCACCGTACCGATTTCCCACACCGCGGGAGGCGGAGTGGCAGCGGGGA
CTGCGGTCCTTGTTGGAGGCCTCTAGCACCCTCGCGGACACGTTCTCTGC
CGCGGATGCTATCGGAGGCGTCTCCCTTGGGACGGGATTGGCGGGTGCTG
GGGTCCCGCCTGCGGACGGGGAGCGCGAACCCGGAGCAAAATTTCACACG
CCTTCGCTCGGCGATTTGAACGCTGATGCGGTCACCGCGCCTTCAAACGC
CGAATCATACACCTTGACAGCACAGGAACCGGCACCCAAACCCGAACCCG
AAAGCGTGCCTGAAATGGACGACAATCTAGGAGAGCGGGAGGGGATGGTA
ACTGCTGGGACGACGACGACGATGCTGCTGCCGCGGGAGGAGGAGGATGC
GTCGCAAGCTCCCCCACGGCCGCCACCGTACCGATTTCCCACACCGCGGG
AGGCGGAGTGGCAGCGGGGACTGCGGTCCTTGTTGGAGGCCTCTAGCACC
CTCGCGGACACGTTCTCTGCCGCGGATGCTATCGGAGGCGTCTCCCTTGG
GACGGGATTGGCGGGTGCTGGGGTCCCGCCTGCGGACGGG
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