mRNA_S-dermatodea_contig12405.1505.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12405.1505.1
Unique NamemRNA_S-dermatodea_contig12405.1505.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12405.1505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12405contigS-dermatodea_contig12405:356..1345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size991
Cds size990
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.1390245-CDS-S-dermatodea_contig12405:355..13451622924247.1390245-CDS-S-dermatodea_contig12405:355..1345Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12405 356..1345 +
1694079122.6133895-CDS-S-dermatodea_contig12405:355..13451694079122.6133895-CDS-S-dermatodea_contig12405:355..1345Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12405 356..1345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12405.1505.1prot_S-dermatodea_contig12405.1505.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12405 356..1345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12405.1505.1

>prot_S-dermatodea_contig12405.1505.1 ID=prot_S-dermatodea_contig12405.1505.1|Name=mRNA_S-dermatodea_contig12405.1505.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=330bp
SHSVLFRYCAPPPLFPPILSRKFGVGGLAKTKGVAVKKCKNSLRSKNVTE
NGSENVMESSSGRGEQGDDSSEGAMTAVVNGRYGPFYSEEGDDDGDIVRP
SKPTSTSARTSASNRTSISTRISTSTCETEDDKKEDDKEKVITRRFPGSA
GKRRRVTVEDDDGEDNRGRACADTGTGLSVRQDASGNLGNPSDGGSSESR
LAGRPRKTVILADRPPAKDAASLGDGPRDGDTMATDEDDDGVTSSLGNNI
TCVTLGDHTIVPDDGAAASGDSVTLADNTAMRAACSAMAVDDVVDDGVTA
EVDLSPVAEAGANRSNRSGVVDEPAEEFVG
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mRNA from alignment at S-dermatodea_contig12405:356..1345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12405.1505.1 ID=mRNA_S-dermatodea_contig12405.1505.1|Name=mRNA_S-dermatodea_contig12405.1505.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=990bp|location=Sequence derived from alignment at S-dermatodea_contig12405:356..1345+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCACTCGGTGCTCTTCAGGTACTGCGCGCCGCCGCCCTTATTCCCTCC
GATCCTGAGCAGAAAATTTGGCGTAGGCGGCCTTGCGAAGACCAAGGGCG
TCGCCGTGAAGAAGTGCAAGAACTCCTTGCGGTCAAAGAACGTTACCGAG
AACGGTTCGGAGAACGTTATGGAGAGCAGCAGCGGCCGCGGCGAGCAAGG
GGATGACTCTTCGGAAGGCGCGATGACCGCTGTCGTGAACGGCAGATACG
GCCCCTTTTATTCGGAAGAGGGAGATGACGATGGCGACATTGTGCGGCCG
TCGAAGCCAACTTCAACTTCAGCTCGAACTTCAGCTTCAAATCGCACTTC
AATTTCAACTCGAATTTCAACTTCAACTTGCGAGACAGAAGACGACAAGA
AAGAAGACGACAAAGAAAAGGTGATAACCAGGAGGTTCCCGGGCTCGGCC
GGAAAGAGGAGGCGAGTGACAGTGGAGGATGACGATGGAGAGGATAATCG
AGGAAGGGCCTGTGCAGACACAGGGACGGGACTGAGCGTCAGACAGGACG
CCTCCGGAAACCTAGGAAACCCTTCCGACGGCGGCTCTAGTGAAAGCCGT
CTCGCTGGTCGCCCACGGAAGACCGTGATCCTCGCTGACCGGCCACCGGC
GAAGGATGCGGCCTCTCTTGGGGATGGACCACGGGATGGGGATACGATGG
CGACGGACGAAGACGACGATGGCGTCACCTCATCCTTGGGCAATAACATC
ACTTGCGTTACCTTAGGCGATCACACCATCGTACCCGATGATGGCGCCGC
CGCTTCTGGCGATAGCGTCACCTTGGCAGACAATACCGCCATGCGGGCGG
CGTGTTCTGCGATGGCGGTTGACGACGTCGTTGATGACGGCGTGACCGCT
GAAGTAGACCTGTCACCCGTGGCTGAGGCCGGCGCCAACAGGAGCAATCG
AAGCGGCGTTGTCGACGAACCCGCCGAAGAATTCGTCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12405:356..1345+

>mRNA_S-dermatodea_contig12405.1505.1 ID=mRNA_S-dermatodea_contig12405.1505.1|Name=mRNA_S-dermatodea_contig12405.1505.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1980bp|location=Sequence derived from alignment at S-dermatodea_contig12405:356..1345+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCACTCGGTGCTCTTCAGGTACTGCGCGCCGCCGCCCTTATTCCCTCC
GATCCTGAGCAGAAAATTTGGCGTAGGCGGCCTTGCGAAGACCAAGGGCG
TCGCCGTGAAGAAGTGCAAGAACTCCTTGCGGTCAAAGAACGTTACCGAG
AACGGTTCGGAGAACGTTATGGAGAGCAGCAGCGGCCGCGGCGAGCAAGG
GGATGACTCTTCGGAAGGCGCGATGACCGCTGTCGTGAACGGCAGATACG
GCCCCTTTTATTCGGAAGAGGGAGATGACGATGGCGACATTGTGCGGCCG
TCGAAGCCAACTTCAACTTCAGCTCGAACTTCAGCTTCAAATCGCACTTC
AATTTCAACTCGAATTTCAACTTCAACTTGCGAGACAGAAGACGACAAGA
AAGAAGACGACAAAGAAAAGGTGATAACCAGGAGGTTCCCGGGCTCGGCC
GGAAAGAGGAGGCGAGTGACAGTGGAGGATGACGATGGAGAGGATAATCG
AGGAAGGGCCTGTGCAGACACAGGGACGGGACTGAGCGTCAGACAGGACG
CCTCCGGAAACCTAGGAAACCCTTCCGACGGCGGCTCTAGTGAAAGCCGT
CTCGCTGGTCGCCCACGGAAGACCGTGATCCTCGCTGACCGGCCACCGGC
GAAGGATGCGGCCTCTCTTGGGGATGGACCACGGGATGGGGATACGATGG
CGACGGACGAAGACGACGATGGCGTCACCTCATCCTTGGGCAATAACATC
ACTTGCGTTACCTTAGGCGATCACACCATCGTACCCGATGATGGCGCCGC
CGCTTCTGGCGATAGCGTCACCTTGGCAGACAATACCGCCATGCGGGCGG
CGTGTTCTGCGATGGCGGTTGACGACGTCGTTGATGACGGCGTGACCGCT
GAAGTAGACCTGTCACCCGTGGCTGAGGCCGGCGCCAACAGGAGCAATCG
AAGCGGCGTTGTCGACGAACCCGCCGAAGAATTCGTCGGCAGCCACTCGG
TGCTCTTCAGGTACTGCGCGCCGCCGCCCTTATTCCCTCCGATCCTGAGC
AGAAAATTTGGCGTAGGCGGCCTTGCGAAGACCAAGGGCGTCGCCGTGAA
GAAGTGCAAGAACTCCTTGCGGTCAAAGAACGTTACCGAGAACGGTTCGG
AGAACGTTATGGAGAGCAGCAGCGGCCGCGGCGAGCAAGGGGATGACTCT
TCGGAAGGCGCGATGACCGCTGTCGTGAACGGCAGATACGGCCCCTTTTA
TTCGGAAGAGGGAGATGACGATGGCGACATTGTGCGGCCGTCGAAGCCAA
CTTCAACTTCAGCTCGAACTTCAGCTTCAAATCGCACTTCAATTTCAACT
CGAATTTCAACTTCAACTTGCGAGACAGAAGACGACAAGAAAGAAGACGA
CAAAGAAAAGGTGATAACCAGGAGGTTCCCGGGCTCGGCCGGAAAGAGGA
GGCGAGTGACAGTGGAGGATGACGATGGAGAGGATAATCGAGGAAGGGCC
TGTGCAGACACAGGGACGGGACTGAGCGTCAGACAGGACGCCTCCGGAAA
CCTAGGAAACCCTTCCGACGGCGGCTCTAGTGAAAGCCGTCTCGCTGGTC
GCCCACGGAAGACCGTGATCCTCGCTGACCGGCCACCGGCGAAGGATGCG
GCCTCTCTTGGGGATGGACCACGGGATGGGGATACGATGGCGACGGACGA
AGACGACGATGGCGTCACCTCATCCTTGGGCAATAACATCACTTGCGTTA
CCTTAGGCGATCACACCATCGTACCCGATGATGGCGCCGCCGCTTCTGGC
GATAGCGTCACCTTGGCAGACAATACCGCCATGCGGGCGGCGTGTTCTGC
GATGGCGGTTGACGACGTCGTTGATGACGGCGTGACCGCTGAAGTAGACC
TGTCACCCGTGGCTGAGGCCGGCGCCAACAGGAGCAATCGAAGCGGCGTT
GTCGACGAACCCGCCGAAGAATTCGTCGGC
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