mRNA_S-dermatodea_contig12404.1504.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12404.1504.1
Unique NamemRNA_S-dermatodea_contig12404.1504.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12404.1504.1 vs. uniprot
Match: D7G1X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.460e-37
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 SLVIFGGDDQTTDGVGGLGDMWVYSPRGSSSRLQSQD-------SWQEDEWKSYDRGGQHPGERREPSLTMINATLVLQGGRVVDGDSDEECDSRLFLLDLADPAGLWR 306
            SLV++GGDDQTT+ VGGLGD+WV+SPRGS SRL + +       S +  EW  Y R G+ PGERREPSL M+N+TL+LQGG++ DG+S+E CDSR FL+DL DP G WR
Sbjct:  100 SLVVYGGDDQTTNQVGGLGDLWVFSPRGSRSRLHASEKDYSYDASDRRSEWTEYRRTGKLPGERREPSLAMVNSTLLLQGGKMEDGESNERCDSRFFLVDLGDPQGEWR 208
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BLAST of mRNA_S-dermatodea_contig12404.1504.1 vs. uniprot
Match: A0A6H5KHR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR5_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 8.890e-36
Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 SLVIFGGDDQTTDGVGGLGDMWVYSPRGSSSRLQ------SQDSW-QEDEWKSYDRGGQHPGERREPSLTMINATLVLQGGRVVDGDSDEECDSRLFLLDLADPAGLWR 306
            SLV++GGDDQTT+ +GGLGD+WV+SP G+ SRL       S DS  +  EW  Y R G+ PGERREPSLTM+N+TL+LQGG+V DG+S+E CDSR FL+DL DP G WR
Sbjct:  194 SLVVYGGDDQTTNQMGGLGDLWVFSPGGTRSRLHASEKDYSYDSLDRRSEWTEYSRAGKLPGERREPSLTMVNSTLLLQGGKVEDGESNERCDSRFFLVDLGDPQGKWR 302
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12404.1504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1X6_ECTSI2.460e-3760.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHR5_9PHAE8.890e-3661.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12404contigS-dermatodea_contig12404:1374..4624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size308
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12404.1504.1prot_S-dermatodea_contig12404.1504.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12404 1374..4622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.0865505-CDS-S-dermatodea_contig12404:1373..15081622924247.0865505-CDS-S-dermatodea_contig12404:1373..1508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12404 1374..1508 +
1694079122.565648-CDS-S-dermatodea_contig12404:1373..15081694079122.565648-CDS-S-dermatodea_contig12404:1373..1508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12404 1374..1508 +
1622924247.0983422-CDS-S-dermatodea_contig12404:3430..35231622924247.0983422-CDS-S-dermatodea_contig12404:3430..3523Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12404 3431..3523 +
1694079122.5799363-CDS-S-dermatodea_contig12404:3430..35231694079122.5799363-CDS-S-dermatodea_contig12404:3430..3523Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12404 3431..3523 +
1622924247.1073918-CDS-S-dermatodea_contig12404:4544..46221622924247.1073918-CDS-S-dermatodea_contig12404:4544..4622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12404 4545..4622 +
1694079122.591875-CDS-S-dermatodea_contig12404:4544..46221694079122.591875-CDS-S-dermatodea_contig12404:4544..4622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12404 4545..4622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12404.1504.1

>prot_S-dermatodea_contig12404.1504.1 ID=prot_S-dermatodea_contig12404.1504.1|Name=mRNA_S-dermatodea_contig12404.1504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
SLVIFGGDDQTTDGVGGLGDMWVYSPRGSSSRLQSQDSWQEDEWKSYDRG
GQHPGERREPSLTMINATLVLQGGRVVDGDSDEECDSRLFLLDLADPAGL
WR
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mRNA from alignment at S-dermatodea_contig12404:1374..4624+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12404.1504.1 ID=mRNA_S-dermatodea_contig12404.1504.1|Name=mRNA_S-dermatodea_contig12404.1504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3251bp|location=Sequence derived from alignment at S-dermatodea_contig12404:1374..4624+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCTGGTGATCTTTGGGGGGGATGACCAGACGACCGATGGGGTGGGAGG
GCTAGGAGATATGTGGGTGTACTCCCCGAGGGGCTCGTCTTCGCGCTTGC
AGTCGCAGGACTCTTGGCAGGAGGACGAATGGAAGGTACGCACTGCTGTG
TACCAAAGGTAAAAGGGACAAGGTATGATGTACCTTTTTTTGGTTTCTTG
GCAGGAGGACGAATGGAAGGTACGCACTGCTGTGTACCAAAGGTAAAAGG
TACAAGGTATCATGTACTTTTTTTTTGTTTCTTGGCAGGAGGACGAATGG
AAGGTACGCACTGCTGTGTACCAAAAGTAAAAGGTACAAGGTATCATGTA
CGGGTACCTTTTTTTGGTTTCTTGGCAGGAGGACGAATGGAAGGTACGCA
CTGCTGTGTACCAAAGGTAAAAGGTACCTGGCACAAGGTATCATGTACGA
GTACCTTTTTTTGGTTTTCCTCGAGCTTCGCCAATGTTTTTTTTTTTTTG
CATCTTGGACTATGATACATCATTCGATAGTGTTTGTATGTTGTGTGTGT
TTTTTTTGCCTGGAGCTCGTACGCTGTTTTTGGTGTCGACGTGCGTGGTT
TGTAGAGTCGGTGACTCGTGTAGGCTGGTACACTATGTATGATATAATTT
TCGTAGTAAAGCGACGTGCCCATTCATTTGCATCCTTCTGCAATAGTAGG
GCAGTCACGGCTACTTTGGTGAGGTGTGCGTTGGCACAAATCACTACCGG
TAGGTACCCTGTAAGCGACCCCTCTAAAATACTATCTTGGCTTTTAGCAT
CACGAATCGTGTGGGAAATTCGGCATAAACGGTCAACTCTAAATCGCTAT
TAAAGAGCGTGCAAAGGGGGTAGTAATTGATAAAAGGATGGATGCTATAA
ATGGAAATGAAAATAAATCAATAAAACAGCAAATAAAGTAAAATCAACCA
AATCAGGCTATTTTATTTTACACGGCTCACCTCGGACAGCACCACCGCTA
TATAGCTGAACCTCTTCAATCGCAGCAAACACAGGTCGAAATTAAAACAA
AGGGTTGGGTGGGGGCTCTATATAAACTCAGTCACGCCTCCCTACACTCT
TGTCCCCTCCGTGCCGTCGAACCTGAAATAAAAAGCAGGTTTGGGGTACT
ACTTGAAGTATATAGACCCAATCACGCCTCCATAAACTCTTGTCCCCTCC
GTGCCGTCGAACCTTAAAACAAACAGCTGGTTGGGAGCTCTATATAAACC
CAATCACGCCTCCATACACTCTTGTCCCCTCCGTGCCGTCGAACCTTAAA
ACAAACAGCTGGTTGGGAGCTCTATATAGACCCAATCACGCCTCCTTACA
CTCTTGTCCCCTCGGTGCCGTCGAACTTTAAAACAAACAGCTGGTTGGGA
GCTCTACATACACCCAATCACGCCTCCATACACTCTCGTTCCCTCTGTGC
CGTCGAACCTACAACAAACCGCTGGTTCGGAGCTCTATATAAACCCAATG
ACGCCTCCTTACACTCTTGTCCCCTCCGTGCCGTCGAACCTTAAAACAAA
CAGCTGGTTGGGAGCTCTATATACACCCAATGACGCCTCCTTACACTCTT
GTCCCCTCCGTGCCGTCGAACCTTAAAACAAGCAGCTGGTTGGGAGCTCT
ATATAAACCCAATCACGCCTCCTTACACTCTTGTTTCCTCCGTGCCGTCG
AACCTACAACAAACCGCTGGTTCGGAGCTCTATATTTACCCAATCACGCC
TCCTTACACTCTTGTCCCCTCGGTGCCGTCGAACCTTAAAATAAGCAGCT
GGTTGGGAGCTCTATATAAACCCAATCACGCCTCCATACACTCTTGTCCC
CTCCGTGCCGTCGAACCTACAACAAACCGCTGGTTGGGAGCTCTATATAA
ACCCAATCACGCCTCCTTACTCTCTTGTCCCCTCGGTGCCGTCGAACCTT
AAAACAAACAACTGGTTGGGAGCTAGCTCTATATACACCCAATCACGCCT
CCTTACACCCTTGTCCCCTCGGTGGCGCTGCGGCCGGTTTTCCACTCCAT
TTTGAAGAGCTACGACCGGGGGGGGCAGCATCCCGGAGAGCGGAGAGAGC
CTTCGCTGACGATGATCAACGCCACCCTCGTGCTGCAAGGGGGCAGGGTG
GTGAGCGTCGCGCGTGTGTGTCGATCGTATCCTCCAGCAGCTGGCAAGAG
CCGTCACCTGCCTGAGTAGCCTGTTTCCCGTGCATGACACATCATTGAAG
CGGGATTGTTTTGATGTTTTGCTGTTTTGCTGTTTCTCTACCAACTATTA
GTAGCTTTTTTTTTGTTGCGTTTCGTGTGAGAAACGAGTTGAGTGTGTGG
CTGCCCTAAGCACGCACTGAAGCTGGATTGTTTTTATGTTTTGCTGTTTC
TCTACTAAATATTAATAGTTTTTTTTTGTTGCGTTTTCTTGTGAGAGACG
AATTGAGAATGTTGCTGCCCTAAGCACGCATTGAAGCTGGCTTGTTTTTG
TGTTTTGCTGTTTCTCTACCAACTGTTATTAGCTTTTTTTTTTGCGTTTT
GTTGTGAGAAACGAGTAGAATGTGTTGCTGCCCTAAGGCTAGCGGAAATA
GTAAGAGTTCCTGTGTTACTGTTATTTTTCTTTGAGAAGTGAAGCCGCAA
TATTGGAGAGACGCTCCCTCCCTCTAAAGTAGTCTCCGTTTTTAGCGCAA
CCTCCAAAAAAACAGTGATCGGCCTCTATACCTTAGGTGACAACACGCGG
CCAAACAGGAGCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCGCCCCCCACCCCCACCCCCCTCCCCCCCCAACTCATNNNNNNNNNN
CCCCTTTTACCCACCCCCACCAAAAAACTCTGTCTCCCCTTCTTTCTTTT
TGGAAAAAAAAGCGGCCAAACCGTGGCCTCCCCCCCCCCCCCCCCCTCCC
TGCGCCCCCCAGGCGCTCCTTCAAATACGATTTATCATCACGTCTTATGT
TTGTTCCTTATTCGCGCAGCTCGTACAGAAAATTCTCAGAACTTGACACG
CCCCCCGGCGCTCCTTCACATGCAATTTTTCCCACATCTTGGGTTTGTTC
CCTATTCCCTCAGCTCGTACGGCAATTTGTCGGAATTTGACACGCACCGC
CTTAACACCGTCGTCGTGCAGGTGGACGGAGATTCAGACGAGGAGTGTGA
CTCTAGGTTATTCCTGCTTGACCTGGCGGATCCTGCGGGGCTCTGGCGAG
A
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Coding sequence (CDS) from alignment at S-dermatodea_contig12404:1374..4624+

>mRNA_S-dermatodea_contig12404.1504.1 ID=mRNA_S-dermatodea_contig12404.1504.1|Name=mRNA_S-dermatodea_contig12404.1504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig12404:1374..4624+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCTGGTGATCTTTGGGGGGGATGACCAGACGACCGATGGGGTGGGAGG
GCTAGGAGATATGTGGGTGTACTCCCCGAGGGGCTCGTCTTCGCGCTTGC
AGTCGCAGGACTCTTGGCAGGAGGACGAATGGAAGAGCCTGGTGATCTTT
GGGGGGGATGACCAGACGACCGATGGGGTGGGAGGGCTAGGAGATATGTG
GGTGTACTCCCCGAGGGGCTCGTCTTCGCGCTTGCAGTCGCAGGACTCTT
GGCAGGAGGACGAATGGAAGAGCTACGACCGGGGGGGGCAGCATCCCGGA
GAGCGGAGAGAGCCTTCGCTGACGATGATCAACGCCACCCTCGTGCTGCA
AGGGGGCAGGGTGAGCTACGACCGGGGGGGGCAGCATCCCGGAGAGCGGA
GAGAGCCTTCGCTGACGATGATCAACGCCACCCTCGTGCTGCAAGGGGGC
AGGGTGGTGGACGGAGATTCAGACGAGGAGTGTGACTCTAGGTTATTCCT
GCTTGACCTGGCGGATCCTGCGGGGCTCTGGCGAGTGGACGGAGATTCAG
ACGAGGAGTGTGACTCTAGGTTATTCCTGCTTGACCTGGCGGATCCTGCG
GGGCTCTGGCGA
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