|
|
Homology
BLAST of mRNA_S-dermatodea_contig12401.1503.1 vs. uniprot
Match: D7FWD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD3_ECTSI) HSP 1 Score: 327 bits (837), Expect = 2.650e-97 Identity = 239/534 (44.76%), Postives = 297/534 (55.62%), Query Frame = 1
Query: 1 QDFFYMTRVSQNASVVLKALLHKPRHSGTPSGN-----NGTRGSANKLFPVERRGVFRVQKALRNYTRPGEERSAALMRKAKRGLKRSEARRGGHRTYVHTQRPEEQLASGAAFPREIRIRTTHFATESESRAI--LSRSPPRAGEGEA---------GRSGANPRGAEGSGFLAAVPPQFSSASASSWIPTGSWGTKILQAMSDAARASPDAGVSASHARVMRKWRRRWGDLG-VSATAEAFASGGASIDSSTNYPSSFDNS--TAFRVNDVSPMCLRCRHVSSNPLVPVSPVNSTDSLPSAS--------------EPVVALGRYCLCSVNQDIQREVLQQDSTSGSHKLVDPAPHGPLLVRGVDNPGDELGSKSADG--------------RLCPPSPAMSAKSSSGGTVIGGEQPGDNGAGARSPSRPGSPERDEGGRLGSPSPGDAGAGLMWRTAS-ARGFVESGLSSVTAAGPVGGAGLKRTRDRRAERRKKKDPFEALEERLLDGFSLESILRQLERQDETLQKGVR 1458
QDFFYMTRVS+NASVVLKAL H R +G +G RG+A K PV RRGVF++Q A + RPGEERSAALMRKAKRGLKRSEARR GHRTYVH QRP+++L SGAAFPREIR+RTTHF +ES SRAI S SP R G RSG + G GF S+W+ GSWGT +LQAM+D ARA + GV+ASHARV+R+W++RWG LG + + A+ +S G + DSS + D + VSPMC RCR+++++PL P P + + S S E V LGRYCLC+VN++IQ EVLQ D++ G + P L V + S +A+G M+A G + G GA R+ S G G GL +S G ++ +GG LKR RDRRA+RRKKKDPFEALEERLLDGFSLESI ++L++QDETLQKGVR
Sbjct: 548 QDFFYMTRVSENASVVLKALSHNNRSAGXXXXXXXXXASGKRGTAQKHHPVGRRGVFKLQVADADELRPGEERSAALMRKAKRGLKRSEARRSGHRTYVHKQRPQDRLTSGAAFPREIRVRTTHFVSESASRAISSASHSPHRGGGAXXXXXXXVVGYSRSGVS-LGGSWDGF-------GDGGGGSAWLSAGSWGTDVLQAMTDFARAGAERGVTASHARVLREWKQRWGPLGTIWSQADDHSSRGTTGDSSDSNGEGEDGGGDEGHGWSLVSPMCSRCRYLTAHPLTPPPPAGTIGTCSSRSLSXXXXXXXXXXXDEAEVTLGRYCLCTVNREIQTEVLQGDASGGHARAATAEPGAALSVGTEAGHEPSVSSPTAEGGXXXXXXXXXXXXXXXXXXXXXMNASEMGGELALEGAGRPVGGASERNTSLGGGXX--------------CGGGLSRMPSSNTLALAAGGFAAXXXXXXIGG--LKRARDRRADRRKKKDPFEALEERLLDGFSLESITKRLQQQDETLQKGVR 1057
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 328.6 |
| Seed ortholog evalue | 5e-87 |
| Seed eggNOG ortholog | 2880.D7FWD3 |
| EggNOG OGs | 29HMI@1,2RQU8@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | mitochondrion |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-25_000580.1 |
| Exons | 5 |
| Model size | 1458 |
| Cds size | 1443 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924247.056211-UTR-S-dermatodea_contig12401:6685..6700 | 1622924247.056211-UTR-S-dermatodea_contig12401:6685..6700 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig12401 6686..6700 - |
| 1694079122.5522084-UTR-S-dermatodea_contig12401:6685..6700 | 1694079122.5522084-UTR-S-dermatodea_contig12401:6685..6700 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig12401 6686..6700 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12401.1503.1 >prot_S-dermatodea_contig12401.1503.1 ID=prot_S-dermatodea_contig12401.1503.1|Name=mRNA_S-dermatodea_contig12401.1503.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=481bp
MTRVSQNASVVLKALLHKPRHSGTPSGNNGTRGSANKLFPVERRGVFRVQ
KALRNYTRPGEERSAALMRKAKRGLKRSEARRGGHRTYVHTQRPEEQLAS
GAAFPREIRIRTTHFATESESRAILSRSPPRAGEGEAGRSGANPRGAEGS
GFLAAVPPQFSSASASSWIPTGSWGTKILQAMSDAARASPDAGVSASHAR
VMRKWRRRWGDLGVSATAEAFASGGASIDSSTNYPSSFDNSTAFRVNDVS
PMCLRCRHVSSNPLVPVSPVNSTDSLPSASEPVVALGRYCLCSVNQDIQR
EVLQQDSTSGSHKLVDPAPHGPLLVRGVDNPGDELGSKSADGRLCPPSPA
MSAKSSSGGTVIGGEQPGDNGAGARSPSRPGSPERDEGGRLGSPSPGDAG
AGLMWRTASARGFVESGLSSVTAAGPVGGAGLKRTRDRRAERRKKKDPFE
ALEERLLDGFSLESILRQLERQDETLQKGVR back to topmRNA from alignment at S-dermatodea_contig12401:2039..6700- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig12401.1503.1 ID=mRNA_S-dermatodea_contig12401.1503.1|Name=mRNA_S-dermatodea_contig12401.1503.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4662bp|location=Sequence derived from alignment at S-dermatodea_contig12401:2039..6700- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGACTTCTTCTACATGACGAGGGTGAGTCAAAACGCCTCGGTTGTTCT
CAAAGCCCTGCTTCACAAGCCACGGCACTCCGGCACGCCCTCGGGGAACA
ACGGCACGCGAGGATCGGCAAACAAGTTATTCCCTGTGGAGAGGAGAGGG
GTGTTCAGAGTTCAGGTGGCCGACGCCGACGAATTAAGGCGAGGACCATT
CGCATCTACCCCCCCCCCAAAACAAATAAATATTTCAGAAACATAGAGCG
AGCGTTGGGGTCCCACCGTTTCAAGAGGGAAGATGGCCCAAGCTACGCCG
ACGGAGGCTCACTTGTTACATGTGATATATTATGCTATGGTGTCTTATCC
CCCCCCCTCCTCCTATTCGCGCTTGGTCAATGCGAGCCTGGTCCGGCGGA
AACCCGGCGTGCTCCGTCCCGTCCCGGCTTTGTAGGGATGCGAGGTCTGT
GGTCTAACGACTACGGCATGCACGATCAATGGGTACACCCCCCCCCTCCT
TCGGTTGTACCGAGAGGATCTAACAATGATCGGATACACCTGTTTTGGCT
GGTCAAGTTAAGACGTTCACGCGATGCAACTCGACGGCCTGTATCGGTTG
ATTGATTGGTCGATTGATTGTTTGGTTGTATCCCACGTACAACCGAACGG
CCCACCACTGGTTGCCGACCACGCTTGTGGTTAGATGAGAAAAAATCGAG
AGATCGAGAAAGCCTTACGGAATTACACGTATGACACATACTAAGATGGA
ATTGGCACAAACTCTCGGAAACAGAGGAAACATACCTTAGGGTTTGGGTT
TGGGTATGCCGCCCCAAAGCACTTGAGCGTGCGAAGGAGCGCCTTCGTGT
GACGCACAAGTGTAGAGCTTCGAAAAAAGCGCAACCTCGATTTATAATCG
AAACAAAAAAGGAAGTCCTCGTGCCGCACCTTGTGACTGCGCGCGTTGCT
GTGATGTGATCGGCACGTTGCTCGCACAGGCAGATAACAAGTTTGCGCTG
TTCCTGTGAGCAGTTCTACCAGTGATGGATGCGTAGTATGGGGTATCTTA
CGTGCTTAATGAAGGGTGATACCTTGAGTTGGGCGCAGGTAGAGCATATG
ACGGTTACATACCGATCTGACATTTCGGGCCATTGGGTGATACTCTGGGT
CATTCATCCAGGAAATTCATATTATCCCGTGTCGGATGGTTGTTGGCCTG
ACGTACGTACGTGCCTGTACTCTCTCCTTCCCGAGACGCGCATCAGCGAG
CAAACATCGATACCTTCTCCTTTCTCCATTGATCGGCTACCGAGCCGTGT
CTTACCGATATACCATCGACGGAATCATCCAAAAAACGCTCTCCTAGACC
AGGTATGTCAACCCCTACCCCCCCCCTATATCCTCTGCATGAGGTATCAC
CGGAGCACATGCCACGCGCGTTCATGCATATGTACCTCCTGTTTTACGTT
ACCGTTACCGATACGGACCACTGCTTCCACTCACGCCGGCTTCCCCTTGC
TACCGGTGCTCACAGCAGGCCGGGGGAGGAACGATCGGCCGCTCTAATGC
GCAAGGCCAAACGGGGCTTGAAACGCTCGGAGGCTCGGAGGGGAGGACAC
CGGACCTACGTCCACACGCAGCGGCCGGAAGAACAACTAGCCAGCGGAGC
AGCCTTTCCGCGAGAAATTAGGATCCGAACGACGCACTTCGCTACCGAAT
CAGAATCGAGGGCGATACTATCGCGCTCTCCCCCTCGTGCGGGTGAAGGG
GAAGCGGGGAGGAGCGGGGCAAATCCCCGGGGTGCGGAAGGCTCGGGATT
TCTTGCGGCCGTGCCGCCGCAGTTTTCGTCTGCGTCCGCGTCGTCTTGGA
TACCGACGGGGTCGTGGGGAACGAAGATTTTGCAGGCGATGTCGGACGCG
GCTCGGGCATCCCCGGACGCCGGGGTCTCTGCTAGCCATGCCAGGGTTAT
GAGGAAATGGAGGCGGAGGTAATTTAGTCGATGGCGGTTTGAAGGGGTTG
GAGATGGGAGGGTGGCATAGCATTCACGAGCGTATAGTCATCGTTCCCTT
GCATGAACGCCTGCGGTAAAAAGCCAAACGTTGTGGGACCCGGAAACATG
AAAAACAACTAATTTCCGTAGTATGCCAATTTTGTTGGAAGTGCCTTTAA
GGGCATTGTTCGAGCCGAATTGGCATGTTTCTTGGCGCGATAACGTGGTG
TGCGCGACGAGGGAGGGTGACATGACGTCATGTGCGGGCTTTCTCGGACT
TTTAGTTTTCGACAAAGTTGACATACTGCATTTCAAGGCGGCCGAAGAAG
GTGTGCGTCTTGCTGCCCCAAGTGAAAAACCTTGGGGAAGTCGCGTGGTC
CGTGCTCTACCCAGGATTGATTGGATGTGTTAATTTTTTGTAATTGGTCA
TGGCAATTACAACCGACCGGCCCACCAACGGTTGACATTGCCGCTTACGG
TCAGGTGAGAAACGTTGTCTTTCGGGCGGCCGATGAAATCGAATACCGCA
GCTTTGCGTACAGCAAAGTCCCCACCGAGGTCGTGTCCCGATGAAGCATG
GATTGTACACTTCCTGTGTTGTTTTGTGTGTGTGTGTCTGTGTGTGTGTG
TTTTGTTTTTGTGCTTTTTTTTAAGTGTAAGCACCCCGTGTTTGAACTTG
AACCGGTACACCAACGTTCAGTAAGAAGGAGGACCCGGGGCAGAGTCGAT
ATTAGTTTAATTTATCTATGCTACCTCCGCCGCGGAAAGCGCGAGAGCGT
GAGTAAGCAACATCCGAGACATCGGCGAGCTGCGGAAGCGCCGAACCCAA
TGCGCAATAAACATCCAACGTAAGAGCCGGGGATAAGAGAGATGGGATGA
TCCCTTGTGACAATAGACGGACCTAGGAAAAGCAAGTCTATCATAGGTGT
GCAAACAAAAACAAAGAAAAGGGCCGATCTTCTTTCCCACGAGAAATGAC
AGAACCCGGAACGATGCACTTCTTCTCAAGTGATAAATCTCCTCAGAATC
AATCGAATGAGCTGTCGTGGAAAATACTCAACATACAGCGCCACATAGCT
TTAATCTTCCCGTCTTCTGTCAACCCATCCTTGCGCTGTAGGTGGGGAGA
CCTGGGGGTGTCCGCAACGGCGGAGGCGTTCGCCTCCGGCGGTGCAAGCA
TCGACAGCTCGACCAATTACCCCTCCAGCTTCGACAACTCCACCGCCTTC
CGCGTGAACGATGTTTCTCCCATGTGTCTGCGATGCCGCCACGTGTCATC
CAATCCTTTGGTCCCCGTGTCACCCGTAAACTCGACTGATTCCTTGCCGT
CCGCTTCTGAGCCTGTGGTCGCGCTGGGGAGGTACTGCCTTTGCTCCGTC
AATCAAGACATCCAACGCGAGGTCTTGCAGGTATGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTATTTTGTTAATTTTATAAATGAAGAAACAGAGCACAAC
AAGTGTACAACCCATCAATCATCGGGACAGGACCCAGGTGGACTTGTTGT
GCAAAAACTGAGAGGAGGTTACGGCCGCCACAAAGAAAATATAATTACTT
GTACAAGTAGAACATGTGCATTTTGTGCAATTGTACAGCCTTGATTTTGG
AACGGTGGGTGGGTGGGTGGGTGGGTGATTGCAGAAAATTGATGCTGAAG
GAATCGATCGAGGGATTGGTTGGTTTGTTGTTGTTGTGCTGTTCATTTTC
ACAAGAGGATGCATGCAGCCCGATGAAGGAATCGCAGGGTTTGGTCAACG
CATAGATTGGAAGGTGTGCTTTGCTCGTCATGTGCATGCATCGATTCGAT
TCCAGGGGAAAACAAAGGAGCATGGGGCAGCTTCGACGACGGTTATATTT
CGCATTTACCTGCAAACTCTGTGCTCTCACCCAACTTTCACCTTCGACCC
GAACCTCCGCAGAACGTATCATGCCATGATAATCACGCATGTCAACGTTT
TTCCCTCCCAAGTATCGAAGTTCTCAGGTGTACACCACACTCACCAACAA
AGCCGGCGTTCCATGTCACCCTCCCGCCGAACCCACCCTTTCGACCCACA
CCGTAAACCTCTTGTCTTCACCCCGTTAAAGCAGGACAGCACCAGCGGCA
GCCACAAGCTTGTCGACCCCGCCCCACACGGGCCCTTGCTCGTCAGAGGC
GTCGACAACCCTGGAGACGAGCTCGGCTCAAAATCTGCAGACGGGAGACT
CTGCCCCCCGTCCCCCGCCATGAGCGCGAAGTCGAGTTCGGGCGGGACGG
TCATCGGTGGCGAGCAACCTGGCGACAACGGAGCGGGTGCCCGCAGCCCG
TCTCGCCCAGGCTCTCCAGAAAGAGACGAGGGGGGGCGACTCGGTTCCCC
GTCCCCCGGCGACGCGGGAGCAGGGCTAATGTGGCGAACAGCCTCTGCGC
GTGGGTTTGTCGAGTCGGGCTTGTCCAGTGTTACCGCGGCGGGGCCGGTC
GGCGGCGCCGGGCTTAAGAGGACGAGGGACAGGCGTGCCGAAAGGCGGAA
GAAGAAGGACCCGTTCGAGGCGCTGGAGGAGCGGCTCCTGGATGGTTTCA
GCCTGGAGAGTATCTTGAGGCAGCTGGAGCGGCAAGATGAGACGCTGCAG
AAAGGGGTGAGA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig12401:2039..6700- >mRNA_S-dermatodea_contig12401.1503.1 ID=mRNA_S-dermatodea_contig12401.1503.1|Name=mRNA_S-dermatodea_contig12401.1503.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2886bp|location=Sequence derived from alignment at S-dermatodea_contig12401:2039..6700- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGAGGGTGAGTCAAAACGCCTCGGTTGTTCTCAAAGCCCTGCTTCA
CAAGCCACGGCACTCCGGCACGCCCTCGGGGAACAACGGCACGCGAGGAT
CGGCAAACAAGTTATTCCCTGTGGAGAGGAGAGGGGTGTTCAGAGTTCAG
ATGACGAGGGTGAGTCAAAACGCCTCGGTTGTTCTCAAAGCCCTGCTTCA
CAAGCCACGGCACTCCGGCACGCCCTCGGGGAACAACGGCACGCGAGGAT
CGGCAAACAAGTTATTCCCTGTGGAGAGGAGAGGGGTGTTCAGAGTTCAG
AAAGCCTTACGGAATTACACAAAGCCTTACGGAATTACACCAGGCCGGGG
GAGGAACGATCGGCCGCTCTAATGCGCAAGGCCAAACGGGGCTTGAAACG
CTCGGAGGCTCGGAGGGGAGGACACCGGACCTACGTCCACACGCAGCGGC
CGGAAGAACAACTAGCCAGCGGAGCAGCCTTTCCGCGAGAAATTAGGATC
CGAACGACGCACTTCGCTACCGAATCAGAATCGAGGGCGATACTATCGCG
CTCTCCCCCTCGTGCGGGTGAAGGGGAAGCGGGGAGGAGCGGGGCAAATC
CCCGGGGTGCGGAAGGCTCGGGATTTCTTGCGGCCGTGCCGCCGCAGTTT
TCGTCTGCGTCCGCGTCGTCTTGGATACCGACGGGGTCGTGGGGAACGAA
GATTTTGCAGGCGATGTCGGACGCGGCTCGGGCATCCCCGGACGCCGGGG
TCTCTGCTAGCCATGCCAGGGTTATGAGGAAATGGAGGCGGAGCAGGCCG
GGGGAGGAACGATCGGCCGCTCTAATGCGCAAGGCCAAACGGGGCTTGAA
ACGCTCGGAGGCTCGGAGGGGAGGACACCGGACCTACGTCCACACGCAGC
GGCCGGAAGAACAACTAGCCAGCGGAGCAGCCTTTCCGCGAGAAATTAGG
ATCCGAACGACGCACTTCGCTACCGAATCAGAATCGAGGGCGATACTATC
GCGCTCTCCCCCTCGTGCGGGTGAAGGGGAAGCGGGGAGGAGCGGGGCAA
ATCCCCGGGGTGCGGAAGGCTCGGGATTTCTTGCGGCCGTGCCGCCGCAG
TTTTCGTCTGCGTCCGCGTCGTCTTGGATACCGACGGGGTCGTGGGGAAC
GAAGATTTTGCAGGCGATGTCGGACGCGGCTCGGGCATCCCCGGACGCCG
GGGTCTCTGCTAGCCATGCCAGGGTTATGAGGAAATGGAGGCGGAGGTGG
GGAGACCTGGGGGTGTCCGCAACGGCGGAGGCGTTCGCCTCCGGCGGTGC
AAGCATCGACAGCTCGACCAATTACCCCTCCAGCTTCGACAACTCCACCG
CCTTCCGCGTGAACGATGTTTCTCCCATGTGTCTGCGATGCCGCCACGTG
TCATCCAATCCTTTGGTCCCCGTGTCACCCGTAAACTCGACTGATTCCTT
GCCGTCCGCTTCTGAGCCTGTGGTCGCGCTGGGGAGGTACTGCCTTTGCT
CCGTCAATCAAGACATCCAACGCGAGGTCTTGCAGGTGGGGAGACCTGGG
GGTGTCCGCAACGGCGGAGGCGTTCGCCTCCGGCGGTGCAAGCATCGACA
GCTCGACCAATTACCCCTCCAGCTTCGACAACTCCACCGCCTTCCGCGTG
AACGATGTTTCTCCCATGTGTCTGCGATGCCGCCACGTGTCATCCAATCC
TTTGGTCCCCGTGTCACCCGTAAACTCGACTGATTCCTTGCCGTCCGCTT
CTGAGCCTGTGGTCGCGCTGGGGAGGTACTGCCTTTGCTCCGTCAATCAA
GACATCCAACGCGAGGTCTTGCAGCAGGACAGCACCAGCGGCAGCCACAA
GCTTGTCGACCCCGCCCCACACGGGCCCTTGCTCGTCAGAGGCGTCGACA
ACCCTGGAGACGAGCTCGGCTCAAAATCTGCAGACGGGAGACTCTGCCCC
CCGTCCCCCGCCATGAGCGCGAAGTCGAGTTCGGGCGGGACGGTCATCGG
TGGCGAGCAACCTGGCGACAACGGAGCGGGTGCCCGCAGCCCGTCTCGCC
CAGGCTCTCCAGAAAGAGACGAGGGGGGGCGACTCGGTTCCCCGTCCCCC
GGCGACGCGGGAGCAGGGCTAATGTGGCGAACAGCCTCTGCGCGTGGGTT
TGTCGAGTCGGGCTTGTCCAGTGTTACCGCGGCGGGGCCGGTCGGCGGCG
CCGGGCTTAAGAGGACGAGGGACAGGCGTGCCGAAAGGCGGAAGAAGAAG
GACCCGTTCGAGGCGCTGGAGGAGCGGCTCCTGGATGGTTTCAGCCTGGA
GAGTATCTTGAGGCAGCTGGAGCGGCAAGATGAGACGCTGCAGAAAGGGG
TGAGACAGGACAGCACCAGCGGCAGCCACAAGCTTGTCGACCCCGCCCCA
CACGGGCCCTTGCTCGTCAGAGGCGTCGACAACCCTGGAGACGAGCTCGG
CTCAAAATCTGCAGACGGGAGACTCTGCCCCCCGTCCCCCGCCATGAGCG
CGAAGTCGAGTTCGGGCGGGACGGTCATCGGTGGCGAGCAACCTGGCGAC
AACGGAGCGGGTGCCCGCAGCCCGTCTCGCCCAGGCTCTCCAGAAAGAGA
CGAGGGGGGGCGACTCGGTTCCCCGTCCCCCGGCGACGCGGGAGCAGGGC
TAATGTGGCGAACAGCCTCTGCGCGTGGGTTTGTCGAGTCGGGCTTGTCC
AGTGTTACCGCGGCGGGGCCGGTCGGCGGCGCCGGGCTTAAGAGGACGAG
GGACAGGCGTGCCGAAAGGCGGAAGAAGAAGGACCCGTTCGAGGCGCTGG
AGGAGCGGCTCCTGGATGGTTTCAGCCTGGAGAGTATCTTGAGGCAGCTG
GAGCGGCAAGATGAGACGCTGCAGAAAGGGGTGAGA back to top
|