mRNA_S-dermatodea_contig1240.1501.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1240.1501.1
Unique NamemRNA_S-dermatodea_contig1240.1501.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1240.1501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1240contigS-dermatodea_contig1240:8660..9166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1240.1501.1prot_S-dermatodea_contig1240.1501.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1240 8679..9002 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.7948437-UTR-S-dermatodea_contig1240:8659..86781622924246.7948437-UTR-S-dermatodea_contig1240:8659..8678Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1240 8660..8678 +
1694079122.3789716-UTR-S-dermatodea_contig1240:8659..86781694079122.3789716-UTR-S-dermatodea_contig1240:8659..8678Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1240 8660..8678 +
1622924246.814466-UTR-S-dermatodea_contig1240:9002..91661622924246.814466-UTR-S-dermatodea_contig1240:9002..9166Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1240 9003..9166 +
1694079122.4057505-UTR-S-dermatodea_contig1240:9002..91661694079122.4057505-UTR-S-dermatodea_contig1240:9002..9166Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1240 9003..9166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.8068774-CDS-S-dermatodea_contig1240:8678..90021622924246.8068774-CDS-S-dermatodea_contig1240:8678..9002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 8679..9002 +
1694079122.3921814-CDS-S-dermatodea_contig1240:8678..90021694079122.3921814-CDS-S-dermatodea_contig1240:8678..9002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 8679..9002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1240.1501.1

>prot_S-dermatodea_contig1240.1501.1 ID=prot_S-dermatodea_contig1240.1501.1|Name=mRNA_S-dermatodea_contig1240.1501.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
MATRVPREREMRVLPRNNAVSTRLPPNPQQAEGLAKNVHFQNHREKKSDT
RHAMIHSSSNVSSNIWMMGIVGRTTHEEDWHNQHINIDYTRQPKPVQFER
NSRSPST*
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mRNA from alignment at S-dermatodea_contig1240:8660..9166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1240.1501.1 ID=mRNA_S-dermatodea_contig1240.1501.1|Name=mRNA_S-dermatodea_contig1240.1501.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at S-dermatodea_contig1240:8660..9166+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCCCGTACAATCAAACAATGGCGACAAGAGTGCCGAGAGAGAGGGAAA
TGAGAGTCCTCCCCCGCAACAACGCCGTGAGTACCCGGCTACCACCAAAT
CCGCAACAAGCAGAGGGCCTGGCAAAAAACGTGCATTTTCAGAACCATAG
AGAGAAGAAATCTGACACGAGGCACGCCATGATCCACTCATCATCCAATG
TATCATCAAATATATGGATGATGGGCATCGTCGGACGAACAACGCACGAA
GAAGATTGGCATAATCAGCATATTAATATAGATTATACACGACAACCAAA
GCCAGTCCAATTCGAACGAAATTCGCGATCTCCATCCACGTAAAAATAGT
ACCGCGTGGTCTGGTGGACAAATCAGTCCTTCACTATGCAAGTTAACCTT
GACACAGCCCCCGCCATCATCCCCAGCCAGGGCTAGCCCCTCTCTTTGAA
AAAAAATACAAACTTATTTGACCAATCAATACTTTCGCCAGCATTCGTTC
CTTCATT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1240:8660..9166+

>mRNA_S-dermatodea_contig1240.1501.1 ID=mRNA_S-dermatodea_contig1240.1501.1|Name=mRNA_S-dermatodea_contig1240.1501.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig1240:8660..9166+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGACAAGAGTGCCGAGAGAGAGGGAAATGAGAGTCCTCCCCCGCAA
CAACGCCGTGAGTACCCGGCTACCACCAAATCCGCAACAAGCAGAGGGCC
TGGCAAAAAACGTGCATTTTCAGAACCATAGAGAGAAGAAATCTGACACG
AGGCACGCCATGATCCACTCATCATCCAATGTATCATCAAATATATGGAT
GATGGGCATCGTCGGACGAACAACGCACGAAGAAGATTGGCATAATCAGC
ATATTAATATAGATTATACACGACAACCAAAGCCAGTCCAATTCGAACGA
AATTCGCGATCTCCATCCACGTAAATGGCGACAAGAGTGCCGAGAGAGAG
GGAAATGAGAGTCCTCCCCCGCAACAACGCCGTGAGTACCCGGCTACCAC
CAAATCCGCAACAAGCAGAGGGCCTGGCAAAAAACGTGCATTTTCAGAAC
CATAGAGAGAAGAAATCTGACACGAGGCACGCCATGATCCACTCATCATC
CAATGTATCATCAAATATATGGATGATGGGCATCGTCGGACGAACAACGC
ACGAAGAAGATTGGCATAATCAGCATATTAATATAGATTATACACGACAA
CCAAAGCCAGTCCAATTCGAACGAAATTCGCGATCTCCATCCACGTAA
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