mRNA_S-dermatodea_contig1240.1500.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1240.1500.1
Unique NamemRNA_S-dermatodea_contig1240.1500.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1240.1500.1 vs. uniprot
Match: D7FP29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP29_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 6.060e-104
Identity = 145/252 (57.54%), Postives = 188/252 (74.60%), Query Frame = 1 
Query:  160 LVMAGDSTMNHQFQVLSEMLHYRSDFYPVQGADAESMYELTFGAPKNTPGSVTFIYIRVFEACVLSPSNPHLANAYAHYFGCGMHLFHMTPLQGPAMMALALKSWISYDTLLTERVKGIRKVNPGIKQIYATTHTIDEAKYTGRWRLAIDGYAARDPEYLDACKAKFNEFLPKDCTERGNVEQACLDTVFGERAVELLNARGLAAMKAAGVPVVPAHLIVAGEAWATPLADGRHYPHVVPLELFWFLTTLEG 915
            +V +GDST+  QFQVL E L  RSDF PV G +A++ YE+TFGAP++TPGSVTF+ + ++E C+L   NP++A AYA YFGCGMHL H+ P+Q  A +  A+ SW +YDTLL+ER+ G R+VNP IK +Y TTHTIDE+KY G W+ A++GY ARDP +L+ CK KF E LP +   R ++EQ C+DTVFG   V+LLN +GLA MK  GVPVVPAH++V G+ WATP  DGRH+P++ PLELFW    LEG
Sbjct:    1 MVFSGDSTIRQQFQVLGEFLKLRSDFQPVDG-NAQA-YEMTFGAPRHTPGSVTFLLMPIYEKCLLVKGNPYVAQAYAMYFGCGMHLLHLFPVQESADVPRAMLSWENYDTLLSERIGGWREVNPDIKLVYMTTHTIDESKYYGEWKTALEGYKARDPVFLEPCKLKFEEILPSESPLRDDLEQVCIDTVFGAHGVQLLNEQGLAVMKEMGVPVVPAHMLVEGQQWATPDGDGRHFPYLTPLELFWLFNILEG 250
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BLAST of mRNA_S-dermatodea_contig1240.1500.1 vs. uniprot
Match: A0A250X0K3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X0K3_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 6.380e-10
Identity = 53/180 (29.44%), Postives = 86/180 (47.78%), Query Frame = 1 
Query:  394 YFGCGMHLFHMTPLQG-PAMMALALKSWISYDTLLTERVKGIRKV-NPGIKQIYATTHTIDEAKYTGRWRLAID--GYAARDPEYLDACKAKFNEFLPKDCTER------GNVEQACLDTVFGERAVELLNARGLAAMKA----AG--VPVVPAHLIVAGEAWATPLADGRHYPHVVPLE 885
            YF CG+ + H+   +   +   + LK  ++ +  L   ++ + KV       +  + H+I EAK+TG +  A+    Y  +  + + +C      F  +           G V++ C   +F E  ++ LN R    +K     AG  V VV  HLI   ++WATP+ADGRHYP +VPLE
Sbjct:  260 YFTCGLWMLHLGNARHVKSDFRVDLKGALNLEDSLDHTLRSMMKVYGSNAMLVCMSAHSIAEAKFTGEYEQAVLLLRYKEKREKVVSSCVNLTQAFAEESNITSIRGDVGGQVQEFCEKALFMEEGMQYLNGRVRKFLKEWEKDAGRVVDVVDGHLITWQKSWATPVADGRHYPTLVPLE 439
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1240.1500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP29_ECTSI6.060e-10457.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A250X0K3_9CHLO6.380e-1029.44Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1240contigS-dermatodea_contig1240:2964..6804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size921
Cds size921
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1240.1500.1prot_S-dermatodea_contig1240.1500.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1240 2964..6804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.8402865-CDS-S-dermatodea_contig1240:2963..32301622924246.8402865-CDS-S-dermatodea_contig1240:2963..3230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 2964..3230 +
1694079122.4137313-CDS-S-dermatodea_contig1240:2963..32301694079122.4137313-CDS-S-dermatodea_contig1240:2963..3230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 2964..3230 +
1622924246.8535166-CDS-S-dermatodea_contig1240:3866..40691622924246.8535166-CDS-S-dermatodea_contig1240:3866..4069Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 3867..4069 +
1694079122.422257-CDS-S-dermatodea_contig1240:3866..40691694079122.422257-CDS-S-dermatodea_contig1240:3866..4069Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 3867..4069 +
1622924246.8639464-CDS-S-dermatodea_contig1240:4572..46241622924246.8639464-CDS-S-dermatodea_contig1240:4572..4624Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 4573..4624 +
1694079122.4330187-CDS-S-dermatodea_contig1240:4572..46241694079122.4330187-CDS-S-dermatodea_contig1240:4572..4624Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 4573..4624 +
1622924246.8725154-CDS-S-dermatodea_contig1240:4982..51171622924246.8725154-CDS-S-dermatodea_contig1240:4982..5117Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 4983..5117 +
1694079122.4446623-CDS-S-dermatodea_contig1240:4982..51171694079122.4446623-CDS-S-dermatodea_contig1240:4982..5117Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 4983..5117 +
1622924246.881855-CDS-S-dermatodea_contig1240:6540..68041622924246.881855-CDS-S-dermatodea_contig1240:6540..6804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 6541..6804 +
1694079122.455754-CDS-S-dermatodea_contig1240:6540..68041694079122.455754-CDS-S-dermatodea_contig1240:6540..6804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1240 6541..6804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1240.1500.1

>prot_S-dermatodea_contig1240.1500.1 ID=prot_S-dermatodea_contig1240.1500.1|Name=mRNA_S-dermatodea_contig1240.1500.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=307bp
CGGWKYCLETQSENDLPLTWFGAWNATIQPKLDRLLVTSAEQREGWSGDN
GLLLVMAGDSTMNHQFQVLSEMLHYRSDFYPVQGADAESMYELTFGAPKN
TPGSVTFIYIRVFEACVLSPSNPHLANAYAHYFGCGMHLFHMTPLQGPAM
MALALKSWISYDTLLTERVKGIRKVNPGIKQIYATTHTIDEAKYTGRWRL
AIDGYAARDPEYLDACKAKFNEFLPKDCTERGNVEQACLDTVFGERAVEL
LNARGLAAMKAAGVPVVPAHLIVAGEAWATPLADGRHYPHVVPLELFWFL
TTLEGA*
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mRNA from alignment at S-dermatodea_contig1240:2964..6804+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1240.1500.1 ID=mRNA_S-dermatodea_contig1240.1500.1|Name=mRNA_S-dermatodea_contig1240.1500.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3841bp|location=Sequence derived from alignment at S-dermatodea_contig1240:2964..6804+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGGGGGTTGGAAATACTGCCTGGAGACGCAATCCGAGAACGACCTTCC
CCTGACCTGGTTTGGGGCTTGGAACGCCACGATACAACCCAAGCTGGACC
GGCTCTTGGTTACGTCTGCCGAGCAACGTGAGGGTTGGTCCGGCGACAAC
GGGCTGCTTTTGGTGATGGCCGGCGACTCGACTATGAACCACCAGTTCCA
GGTGCTTTCGGAGATGTTGCATTATCGGAGCGATTTCTACCCGGTACAGG
GAGCCGACGCGGAGAGCGTAGCGGTGAGTCATCGATTGCTGATTGCACTT
TGCATACATGACATGTTATGTGAGTGGCCTGGTCGGTGCGTTCGTGTGCG
CTTTTGTGATGCGCGAGTTAGTGATGTAGTGAGGCGAGAAAACGAACAGT
AATTATCGCAGCGCGTGTAGGTAAAACGTGATGAGAGCCCTACACGGCAT
TGAAAAGGGGCGCTGGCAGAGATCCGCCCCCACATCACGGAGCGAATCGA
GGGCCAGTCTCGACGAGGGGGCGCATGAGACGCATACATGTGGCGTTCGA
TTTAGAAAACAAATGGATGCGCCATTTTGCAAGCTTGTGGTCACCTCTAT
GGACCAAAAGGCGCGTTCCCTCATCCACGCCAAGACTTATTGTTAGTCCC
CCTCGTCCAACGGCCATGTGTCTTTGCCCCATTTACGTCGACAAACCCCT
GTGTTGTGTTTTGGTGATGGTCCATAGAAAGCCAACAAGAGGATTCTATC
CAAGGCACGGTGTTCGAACAGGAAAAGGCAACGCGGCTTTGGCCGTGTAT
GCCCCCCCTTCCTTCAGTGGAGAACGGACGATGTGGTCCACTGGTCCTGA
TCAGACGCCGCACTCGTTTTAATCCTGGTTTTACATTCTTGCTGCTCGTG
CAGATGTACGAGCTGACATTCGGCGCGCCCAAGAACACTCCGGGATCGGT
CACGTTCATCTATATCCGCGTTTTCGAGGCTTGTGTGCTCAGCCCCTCCA
ACCCTCATCTGGCTAACGCGTACGCCCACTACTTCGGGTGCGGCATGCAC
CTATTCCACATGACCCCCCTTCAAGGGCCGGCGATGATGGCGCTGGCTCT
GAAGAGGTGAGCTGGTTCTTCTTCAGCAGATATTGCGACTGGTTGCTGCG
TGACGTTCCACACATGTGCGCTGCGGCTGTTTTGGCACCCGCCAGCACTG
GGGGGCCTCAGCCGACATGTCAAGAATCAACGCTGCCTGCTCCGTTTGGA
CAAAAGTCTGTACCTTCGCACCTTGCGACGAAATCCTCAAAAGTACAGCC
TGTTCTAGCGCGTAGGTACAGAAACATGATGTATCGTGTCGTGCGAGACA
TTCGACGGACTTTAATTCTCATTTTCTCACGGATGCGCTTGAGCAACAAA
ATCGGGCATTGCAAGGTTAGTCCAAGTGCTCTCTTGCACTACCCGCAGAG
TTCGAGTTCAGTACTTGTGTGTTGTATTTTTCACCAGGGACCCCAACCAA
ACCATCTCTTCCGTTTTTTGCTTTTATGCGAGGCCGTGGATGAGTTTCGC
ATTTCTTACGATGCTCCCGCCGTCTCTCCCCCGTTGTTCTCGTCACCTTT
GGAAATCAGCTGGATTTCATACGACACGCTTCTCACGGAGAGAGTCAAGG
GCATTCGAAAGGTGCACGAATACTGTACCGGATATTCGGGAGGTCTGCTA
CAGTTCGTCGTCGCTCGTTATTTTCGCGCAAAGGCTCAATCAGGGAAACG
TTTTGTTGCGAAAGAGGCTTCCTTCAAGCAGCCAGGAGGGCGAGGCTAAC
AGATTGGCGGGCCCCCGACACCTTAGCTCGCCGTTCTCGGATTGACACCC
GTGACAGAGTAGCTTCGTTGGCGCTCGTTTCCGCCTGTTTTTTGTTTGTC
GCGCTCGAGCGGGAAGCGCGCCCGAAGACCTGCCTGGGACCTCTTGCGCC
TGGGAGAAGAGGCTAATAGTACACGCCCCCTTGCTCCGTACGCCCGACGC
TGTTCCGACGAAACTCAAGGTTAATCCAGGCATCAAGCAGATCTACGCCA
CGACCCACACGATCGATGAGGCGAAGTACACCGGAAGGTGGCGCCTTGCC
ATCGACGGGTACGCGGCGCGCGACCCGGAGTACTTGGATGCCTGCAAGGC
CAAGGTGAAACATGTTTTTAGAGGACCCCCCTTTCAATGCAAACTATGAC
GAACACGAAGAGTGAGTGTTGTTTGGATGTGCCTTCTTTCCCTCGCCTCC
CACGCCCCCACAGAGGCGCAGACAAGGTACCTACCTTGTACTCACTTCTT
TTCTGAGCGATACACGAACCCCATTCGAACGTGCGGAATTTAGTGGCCGT
GTGCGTTTTCGCGGGATGTAGGGCGGCGTTTCACAAAGACTCGACGCAAC
TGAATGGCCGGCAGATAGCGAGACCCCCCCTCCTCCCCTTTTGCGTTATT
CTCCCCAAGTGCCTGTTAAAGTCCGGGTTGCGCAGCAATTAGGCAATGTA
GTTCGATTTGGTGCTCTGGCAGCTTCGAAATTGGGCCCGGCGTCGTTTGT
TTTACCCCCTTGTTCCTACGGCCCCTTCAAACTCCCTTTGTTTTTCTCGT
AAGATTTATCACGTACCTTGAGTAACGCGTGCCAGAAATTCATTTTGTAG
GGTGTTTTTCCTCCCTAAAACAACACTTGACACCACGATTGTTTTTGTCT
TTGTGGTGGAGTACAATAGGGTGTACCCGGCACGCGAGGTTAACGTGATC
ACCGCGGGAGATTTGCATGCCATGTCTGAGTGTTTTTTGTTTTTTGCGAG
ATGGAGCAAGAGGACAAAAGTGTGGAATATGTGAAAACGGTCGGCGAAGA
AAAGGAATAAACAAGGTGGGATATCGTACCCATCAAAGATGTTTCAAACT
TTGTCGCAATATTGCCTAGCTCAAATCAAGTAGGGTACGTTGCGCGTATG
TTCGCGCTCAGGCGGTGCTTCGGGTGCCCACCAATGCATGTATCTGCCCC
TTTCCTTGTATTTTTTGCGCGGATTGCGCGGTAGTGTTGTGTACACGGGC
GCTCCGACAACCTGAACTGCCGTGCACTGTGCGTAGGCCTTCTTTCTGGT
ATCATGTTATGATTGCCACAGCCATAAGACAGTCGTGTTTTTCGGTTTTT
GGGATTAGGGTTCGTCTGCACAACACCGTTGAGCAAATCGTTCACGGTGG
AAGGACGCGTGCATCGCCAACCAACCGTGGAAACTGTTCAAAGACTCGCA
CCGCTCACGCACGTTGTTTATCTCAAATCCTCCCGCATGTGTGCCCGATC
GGATATTTCTGTGTAGTGTCCTCGCTGTCGCAAAAAAGCTGGAAGTTTTT
CGTGCGCCAGATTGCGTGTTGAGGGGTGGGGCAGGGTATAATCTTCTTGC
TGGAGGATTTTTAAACGCTCCCCGTCGTTGCCGCTCCGTGAGAGATCTCA
GGGCATGTGTACCAAGACAAGGTACAAAAATACGCGCTTTTTACGCGAGA
GAAACATAAATGCTACCGCTCAATTCACCCTCGCCTCGATTCCGCCCGGC
ATTCGTCACCCTTGCCGCTCTATTTAGTTCAACGAGTTTCTCCCCAAGGA
TTGTACGGAGCGAGGGAACGTGGAGCAGGCTTGCCTCGACACCGTGTTTG
GCGAGCGAGCGGTGGAGCTTCTCAACGCGCGCGGTTTGGCGGCGATGAAG
GCCGCAGGCGTTCCCGTGGTCCCGGCGCACTTGATCGTGGCGGGGGAGGC
GTGGGCCACGCCTCTAGCGGATGGGCGGCACTACCCGCACGTAGTGCCCT
TGGAGCTGTTTTGGTTTCTGACCACCCTGGAAGGGGCCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1240:2964..6804+

>mRNA_S-dermatodea_contig1240.1500.1 ID=mRNA_S-dermatodea_contig1240.1500.1|Name=mRNA_S-dermatodea_contig1240.1500.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at S-dermatodea_contig1240:2964..6804+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGGGGGTTGGAAATACTGCCTGGAGACGCAATCCGAGAACGACCTTCC
CCTGACCTGGTTTGGGGCTTGGAACGCCACGATACAACCCAAGCTGGACC
GGCTCTTGGTTACGTCTGCCGAGCAACGTGAGGGTTGGTCCGGCGACAAC
GGGCTGCTTTTGGTGATGGCCGGCGACTCGACTATGAACCACCAGTTCCA
GGTGCTTTCGGAGATGTTGCATTATCGGAGCGATTTCTACCCGGTACAGG
GAGCCGACGCGGAGAGCTGCGGGGGTTGGAAATACTGCCTGGAGACGCAA
TCCGAGAACGACCTTCCCCTGACCTGGTTTGGGGCTTGGAACGCCACGAT
ACAACCCAAGCTGGACCGGCTCTTGGTTACGTCTGCCGAGCAACGTGAGG
GTTGGTCCGGCGACAACGGGCTGCTTTTGGTGATGGCCGGCGACTCGACT
ATGAACCACCAGTTCCAGGTGCTTTCGGAGATGTTGCATTATCGGAGCGA
TTTCTACCCGGTACAGGGAGCCGACGCGGAGAGCATGTACGAGCTGACAT
TCGGCGCGCCCAAGAACACTCCGGGATCGGTCACGTTCATCTATATCCGC
GTTTTCGAGGCTTGTGTGCTCAGCCCCTCCAACCCTCATCTGGCTAACGC
GTACGCCCACTACTTCGGGTGCGGCATGCACCTATTCCACATGACCCCCC
TTCAAGGGCCGGCGATGATGGCGCTGGCTCTGAAGAGATGTACGAGCTGA
CATTCGGCGCGCCCAAGAACACTCCGGGATCGGTCACGTTCATCTATATC
CGCGTTTTCGAGGCTTGTGTGCTCAGCCCCTCCAACCCTCATCTGGCTAA
CGCGTACGCCCACTACTTCGGGTGCGGCATGCACCTATTCCACATGACCC
CCCTTCAAGGGCCGGCGATGATGGCGCTGGCTCTGAAGAGCTGGATTTCA
TACGACACGCTTCTCACGGAGAGAGTCAAGGGCATTCGAAAGCTGGATTT
CATACGACACGCTTCTCACGGAGAGAGTCAAGGGCATTCGAAAGGTTAAT
CCAGGCATCAAGCAGATCTACGCCACGACCCACACGATCGATGAGGCGAA
GTACACCGGAAGGTGGCGCCTTGCCATCGACGGGTACGCGGCGCGCGACC
CGGAGTACTTGGATGCCTGCAAGGCCAAGGTTAATCCAGGCATCAAGCAG
ATCTACGCCACGACCCACACGATCGATGAGGCGAAGTACACCGGAAGGTG
GCGCCTTGCCATCGACGGGTACGCGGCGCGCGACCCGGAGTACTTGGATG
CCTGCAAGGCCAAGTTCAACGAGTTTCTCCCCAAGGATTGTACGGAGCGA
GGGAACGTGGAGCAGGCTTGCCTCGACACCGTGTTTGGCGAGCGAGCGGT
GGAGCTTCTCAACGCGCGCGGTTTGGCGGCGATGAAGGCCGCAGGCGTTC
CCGTGGTCCCGGCGCACTTGATCGTGGCGGGGGAGGCGTGGGCCACGCCT
CTAGCGGATGGGCGGCACTACCCGCACGTAGTGCCCTTGGAGCTGTTTTG
GTTTCTGACCACCCTGGAAGGGGCCTAATTCAACGAGTTTCTCCCCAAGG
ATTGTACGGAGCGAGGGAACGTGGAGCAGGCTTGCCTCGACACCGTGTTT
GGCGAGCGAGCGGTGGAGCTTCTCAACGCGCGCGGTTTGGCGGCGATGAA
GGCCGCAGGCGTTCCCGTGGTCCCGGCGCACTTGATCGTGGCGGGGGAGG
CGTGGGCCACGCCTCTAGCGGATGGGCGGCACTACCCGCACGTAGTGCCC
TTGGAGCTGTTTTGGTTTCTGACCACCCTGGAAGGGGCCTAA
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