mRNA_S-dermatodea_contig12399.1499.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12399.1499.1
Unique NamemRNA_S-dermatodea_contig12399.1499.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Match: D7G1B2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1B2_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 1.600e-112
Identity = 172/253 (67.98%), Postives = 196/253 (77.47%), Query Frame = 1 
Query:    7 DGGEFVPPPVRTVPVKLPGLVAGGSTIVTHSTLARMELQLPKHYRGYNWYLLFSTFRDGASYMQLYNRIKAERPTFLIVESMCGEVFGGFATSAWSSGCQYYGTGECFLFTLEGDRV------KSTETAGNGEGEDGE---------GRALIDGDITTHEWTGMNTYLQYSDGDGMXXXGGGTEGAFGLFIGDDFLSGSTGTCDTFCNPPLCSKREFQISQVEVWGFSTADTEMGARLERLRKTLRGKTTRPL 720
            D G    PP    P++LPGLV GGSTIVTH+TLARME   PKH+RGYNWYLL+STFRDGASY  LYNRI+ E PTFLIVESM GEVFGGFATSAWSSGCQYYGTGECFLF +EG+RV      + TE   +    DG           + L++GD+T   WTGMN YLQYSDG G+   GGG +G+FGLFIG+DFL+GSTG CDT+ NPPLCS+ +FQ+SQVEVWGF+TADTEMGARLERLRKTLRGKTTRPL
Sbjct:  420 DPGVRPSPPPAEAPLQLPGLVCGGSTIVTHTTLARMEAAQPKHHRGYNWYLLYSTFRDGASYTTLYNRIQGEEPTFLIVESMRGEVFGGFATSAWSSGCQYYGTGECFLFKMEGERVTVESEEEQTENDSDDRSADGRTGSSETVAASKTLLEGDLTAFGWTGMNMYLQYSDGKGIAMGGGGADGSFGLFIGEDFLTGSTGKCDTYGNPPLCSQEQFQVSQVEVWGFTTADTEMGARLERLRKTLRGKTTRPL 672
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BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Match: A0A4D9DBE4_9STRA (TLDc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBE4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.740e-30
Identity = 81/231 (35.06%), Postives = 113/231 (48.92%), Query Frame = 1 
Query:   25 PPPVRTVPVKLPGLVAGG--STIVTHSTLARMELQLPKHYRGYNWYLLFSTFRDGASYMQLYNRIKAERPTFLIVESMCGEVFGGFATSAWS-----SGCQYYGTGECFLFTL------EGDRVKSTETA------------GNGEGEDGEGRALIDGDITTHEWTGMNTYLQYSDGDGMXXXGGGTEGAFGLFIGDDFLSGSTGTCDTFCNPPLCSKREFQISQVEVWGF 642
            P    T+ +  P L A G  S I+    +  ++  LP  Y+GY+W L FS  +DG+S+   Y ++K+  PT L++ S   EVFGGF T+ W+     +G  YYGTGE FL+ +      +G  +  +E                GE E    R  +   I    WT  NTY   S  + +   GGG  G FGLFIGD+FL GS+G  +TF N PL   + F+I   E W  
Sbjct:   52 PRTTTTLSISSPALFAPGHQSEILNKKDVEELDSLLPTMYQGYSWNLRFSLDKDGSSFQTFYRQVKSVSPTILVIRSKENEVFGGFTTTPWAVHTTAAGPLYYGTGESFLYKVRPSHRSQGSSLSISENGIFNAEDEEEDLKRPGENEKSSTRRKM---IQFFPWTRENTYYMLSTENSLGMGGGG--GEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFECWSL 277
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BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Match: A0A7S3PWU6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWU6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.010e-26
Identity = 63/182 (34.62%), Postives = 100/182 (54.95%), Query Frame = 1 
Query:  124 LPKHYRGYNWYLLFSTFRDGASYMQLYNRIKAERPTFLIVESMCGEVFGGFATSAWSSGCQYYGTGECFLFTLEGDRVKSTETAGNGEGEDGEGRALIDGDITTHEWTGMNTYLQYSDGDGMXXXGGGT----EGAFGLFIGDDFLSGSTGTCDTFCNPPLCSKREFQISQVEVWGFSTADT 657
            LP      N+Y+ +S  RDGAS+  +  +I+A + T + +E+  GEVFG F++S W     Y+G+GE FL+ ++ DR    ++  +        +A ++ D+    WTG N + Q+   D     GGG+    EG FGL + +D   GST  C TF NPPL ++ +F+I  +E+W  + A T
Sbjct:  686 LPYSVSEKNFYMKYSLVRDGASFYNMLQQIRASQHTLIGIETTDGEVFGSFSSSPWRKSKTYFGSGEAFLWKMKNDRKTLCKSVID--------QASLESDVEVFAWTGKNYFNQFCS-DAKFALGGGSSNEKEGGFGLLVENDLFYGSTNFCSTFGNPPLSTRTQFEIVNLEIWTMTAAMT 858
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BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Match: A0A024GE06_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GE06_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.620e-24
Identity = 63/189 (33.33%), Postives = 94/189 (49.74%), Query Frame = 1 
Query:   79 STIVTHSTLARMELQLPKHYRGYNWYLLFSTFRDGASYMQLYNRIKAERPTFLIVESMCGEVFGGFATSAWSSGCQYYGTGECFLFTLEGDRVKSTETAGNGEGEDGEGRALIDGDITTHEWTGMNTYLQYSDGDGMXXXGGGTEGAFGLFIGDDFLSGSTGTCDTFCNPPLCSKREFQISQVEVWGFS 645
            S I+T   +AR++  LP   +  NWYL++ST RDG+S   L    +++ PT L+V+     VFGGFA+  W     YYG GE FLF+ +                           +T + W+  N Y  +   + +   GGG    FGLF+ +D   G+TG C+TF + PL   ++F   QVE+W F+
Sbjct:  763 SGILTLDHVARLDQHLPITTQLCNWYLVYSTDRDGSSLDTLLIMSESKYPTLLVVKDANDNVFGGFASDVWRRSSHYYGNGESFLFSFQAGLS-----------------------LTVYPWSRRNNYFMFCSEEALMMGGGGN---FGLFLDNDLHCGTTGACETFGSLPLAPTQDFYCMQVELWAFT 925
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BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Match: M2Y7X2_GALSU (TLDc domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y7X2_GALSU)

HSP 1 Score: 110 bits (275), Expect = 3.790e-24
Identity = 62/186 (33.33%), Postives = 91/186 (48.92%), Query Frame = 1 
Query:   79 STIVTHSTLARMELQLPKHYRGYNWYLLFSTFRDGASYMQLYNRIKAERPTFLIVESMCGEVFGGFATSAWSSGCQYYGTGECFLFTLEGDRVKSTETAGNGEGEDGEGRALIDGDITTHEWTGMNTYLQYSDGDGMXXXGGGTEGAFGLFIGDDFLSGSTGTCDTFCNPPLCSKREFQISQVEVW 636
            S I+  + L  + L +P+ Y+  +W LL+ST   G S    Y+R+  + PT L++++  G+ FG +A+  W     YYGTGECF+FTL  +                            + W+  N   Q S  D +   GG     F ++I  DF+SGS+G CDTF +P LCS REF    +E W
Sbjct:  298 SAILRSNDLILLSLCMPRRYQNCDWSLLYSTNDHGISIHTFYSRVSEKSPTLLLIKNTDGDCFGCYASQPWKPCLHYYGTGECFVFTLSPE-------------------------YHVYRWSSENHSFQLSSMDFLAIGGG---KHFAIWIDSDFVSGSSGECDTFHSPTLCSYREFTCHILEAW 455
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BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Match: A0A7S4R8M2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R8M2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.460e-24
Identity = 70/190 (36.84%), Postives = 98/190 (51.58%), Query Frame = 1 
Query:  124 LPKHYRGYNWYLLFSTFRDGASYMQLYNRIKAERPTFLIVESMCGEVFGGFATSAW-------SSGCQYYGTGECFLFTLEGDRVKSTETA----GNGEGED-GEGRALIDGDITTHEWTGMNTYLQYSDGDG--MXXXGGGTEGAFGLFIGDDFLSGSTGTCDTFCNPPLCSKRE-FQISQVEVWGFST 648
            LP       W  ++S  RDG ++      +  E+ T L++++  G+VFGG+A +AW       +SG  +YG+ +  LF L    V + + A     NG  +D G  +     DI  + WTG N Y+Q  D     +   GGGTEG+FGL + DDF  GSTG CDTF N  LC   E F +  +E WGF T
Sbjct:  320 LPPSMAYCRWKRVYSLLRDGDAFDAFLRLVHKEQRTLLVIKTSKGDVFGGYAETAWEVMHRRENSG-GFYGSAQACLFKLLKKNVSNDDCATSADANGYNDDIGRQQLQNSNDINVYRWTGRNRYIQLCDSTHKMIAFGGGGTEGSFGLTVEDDFRRGSTGYCDTFGNDALCHDGEDFDVIDLECWGFIT 508
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BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Match: A0A7S2PL69_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PL69_9STRA)

HSP 1 Score: 107 bits (267), Expect = 6.350e-23
Identity = 63/174 (36.21%), Postives = 93/174 (53.45%), Query Frame = 1 
Query:  151 WYLLFSTFRDGASYMQLYNRIKAERPTFLIVESMCGEVFGGFATSAW----SSGCQYYGTGECFLFTLEGDRVKSTETAGNGEGEDGEGRALIDGD-ITTHEWTGMNTYLQYSD--GDGMXXXGGGTEGAFGLFIGDDFLSGSTGTCDTFCNPPLCSKREFQISQVEVWGFSTA 651
            W  ++S  +DG S   +   +   R T ++++S  G++FG FA   W    S G  +YG+G+ FLF+++    K      N    + +  A  + D +  ++W G N YLQ  D   D +   GGG  G+FGL + D F  GSTG C+TF NP LCS  EF I  +E++GF TA
Sbjct:  326 WKRIYSVAKDGDSMKTMLYLVSRYRYTLMVIKSTRGDIFGAFANDTWEERGSRGKTFYGSGQSFLFSVKSSLAK----VDNAPICEMQPYAPTNRDQVEIYKWKGTNVYLQMCDTSNDRIAMGGGGNSGSFGLCVEDSFRRGSTGYCETFGNPRLCSDNEFDILDMEMYGFVTA 495
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BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Match: A0A7S0KN75_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KN75_MICPS)

HSP 1 Score: 100 bits (249), Expect = 5.370e-21
Identity = 63/195 (32.31%), Postives = 87/195 (44.62%), Query Frame = 1 
Query:   79 STIVTHSTLARMELQLPKHYRGYNWYLLFSTFRDGASYMQLYNRIKAER-------PTFLIVESMCGEVFGGFATSAWSSGCQYYGTGECFLFTLEGDRVKSTETAGNGEGEDGEGRALIDGDITTHEWTGMNTYLQYSDGDGMXXXGGGTEGAFGLFIGDDFLSGSTGTCDTFCNPPLCSKREFQISQVEVWGF 642
            S +   S    +    P   R  +W L +ST RDG S   +Y    + R        + L+V S  GE FG F T  W    +YYGTGE F+F LEG    +TE AG+     G  R           WT  N Y  +   +     GG     F L++ ++   G++   DTF N PL S+ EF ++ VE+W F
Sbjct:  171 SAVCDSSIAFALSRAFPARLRDSSWRLRYSTKRDGTSLRTMYRAAGSARVGEHRCEESVLLVRSSSGERFGAFTTEHWRVAPRYYGTGESFVFVLEGAGGSNTEVAGSNPAAGGGARVF--------PWTQRNNYFVFGRNECAAVGGG---AGFALWLDEELARGNSARSDTFGNDPLSSEHEFDVACVELWTF 354
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BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Match: I2CNY1_NANGC (Oxidation resistance 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CNY1_NANGC)

HSP 1 Score: 98.2 bits (243), Expect = 1.760e-19
Identity = 60/193 (31.09%), Postives = 91/193 (47.15%), Query Frame = 1 
Query:   73 GGSTIVTHSTLARMELQLPKHYRGYNWYLLFSTFRDGASYMQLYNRIKAERPTFLIVESMCGEVFGGFATSAW-SSGCQYYGTGECFLFTLEGDRVKSTETAGNGEGEDGEGRALIDGDITTHEWTGMNTYLQY-SDGDGMXXXGGGTEGAFGLFIGDDFLSGSTGTCDTFCNPPLCSKREFQISQVEVWGFS 645
            G S I+    +  +E  LP+H+R  +W+LL+S  + G +   ++ R K    + L V    G VFGG AT  W     +Y+G+GE FLF+ + ++                           + WT  NTY    S   GM   GG   G FGL++  D   GS+  CDTF +  L  ++ F++  +EVWGF+
Sbjct:  815 GKSAILAPWQVITLERSLPEHHRDRDWFLLYSLKKHGTAMHTIFERCKDHPYSLLCVVDNDGVVFGGMATEEWRDQKDRYFGSGESFLFSFKSNK------------------------FAKYTWTRNNTYFMLASQRIGMAMGGG---GHFGLYLNSDLTRGSSDKCDTFGSVTLSGEKNFEVVNIEVWGFA 980
[Close]
BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Match: W7U0C4_9STRA (Oxidation resistance protein 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0C4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.880e-19
Identity = 60/193 (31.09%), Postives = 91/193 (47.15%), Query Frame = 1 
Query:   73 GGSTIVTHSTLARMELQLPKHYRGYNWYLLFSTFRDGASYMQLYNRIKAERPTFLIVESMCGEVFGGFATSAW-SSGCQYYGTGECFLFTLEGDRVKSTETAGNGEGEDGEGRALIDGDITTHEWTGMNTYLQY-SDGDGMXXXGGGTEGAFGLFIGDDFLSGSTGTCDTFCNPPLCSKREFQISQVEVWGFS 645
            G S I+    +  +E  LP+H+R  +W+LL+S  + G +   ++ R K    + L V    G VFGG AT  W     +Y+G+GE FLF+ + ++                           + WT  NTY    S   GM   GG   G FGL++  D   GS+  CDTF +  L  ++ F++  +EVWGF+
Sbjct: 1314 GKSAILAPWQVITLERSLPEHHRDRDWFLLYSLKKHGTAMHTIFERCKDHPYSLLCVVDNDGVVFGGMATEEWRDQKDRYFGSGESFLFSFKSNK------------------------FAKYTWTRNNTYFMLASQRIGMAMGGG---GHFGLYLNSDLTRGSSDKCDTFGSVTLSGEKNFEVVNIEVWGFA 1479
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12399.1499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1B2_ECTSI1.600e-11267.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9DBE4_9STRA3.740e-3035.06TLDc domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S3PWU6_9STRA3.010e-2634.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A024GE06_9STRA1.620e-2433.33Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
M2Y7X2_GALSU3.790e-2433.33TLDc domain-containing protein n=1 Tax=Galdieria s... [more]
A0A7S4R8M2_9STRA5.460e-2436.84Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2PL69_9STRA6.350e-2336.21Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0KN75_MICPS5.370e-2132.31Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
I2CNY1_NANGC1.760e-1931.09Oxidation resistance 1 n=1 Tax=Nannochloropsis gad... [more]
W7U0C4_9STRA1.880e-1931.09Oxidation resistance protein 1 n=2 Tax=Monodopsida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12399contigS-dermatodea_contig12399:42..5797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.1
Seed ortholog evalue3e-81
Seed eggNOG ortholog2880.D7G1B2
EggNOG free text desc.negative regulation of peptidyl-cysteine S-nitrosylation
EggNOG OGsCOG5142@1,KOG2372@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size793
Cds size612
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.7036512-UTR-S-dermatodea_contig12399:41..1111622924246.7036512-UTR-S-dermatodea_contig12399:41..111Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12399 42..111 -
1694079122.28817-UTR-S-dermatodea_contig12399:41..1111694079122.28817-UTR-S-dermatodea_contig12399:41..111Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12399 42..111 -
1622924246.7616718-UTR-S-dermatodea_contig12399:5686..57971622924246.7616718-UTR-S-dermatodea_contig12399:5686..5797Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12399 5687..5797 -
1694079122.366662-UTR-S-dermatodea_contig12399:5686..57971694079122.366662-UTR-S-dermatodea_contig12399:5686..5797Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12399 5687..5797 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.7152338-CDS-S-dermatodea_contig12399:111..2041622924246.7152338-CDS-S-dermatodea_contig12399:111..204Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12399 112..204 -
1694079122.3010516-CDS-S-dermatodea_contig12399:111..2041694079122.3010516-CDS-S-dermatodea_contig12399:111..204Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12399 112..204 -
1622924246.7233062-CDS-S-dermatodea_contig12399:1878..19421622924246.7233062-CDS-S-dermatodea_contig12399:1878..1942Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12399 1879..1942 -
1694079122.315325-CDS-S-dermatodea_contig12399:1878..19421694079122.315325-CDS-S-dermatodea_contig12399:1878..1942Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12399 1879..1942 -
1622924246.7308621-CDS-S-dermatodea_contig12399:2437..26971622924246.7308621-CDS-S-dermatodea_contig12399:2437..2697Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12399 2438..2697 -
1694079122.3249779-CDS-S-dermatodea_contig12399:2437..26971694079122.3249779-CDS-S-dermatodea_contig12399:2437..2697Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12399 2438..2697 -
1622924246.7385943-CDS-S-dermatodea_contig12399:4999..51291622924246.7385943-CDS-S-dermatodea_contig12399:4999..5129Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12399 5000..5129 -
1694079122.33424-CDS-S-dermatodea_contig12399:4999..51291694079122.33424-CDS-S-dermatodea_contig12399:4999..5129Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12399 5000..5129 -
1622924246.7509634-CDS-S-dermatodea_contig12399:5621..56861622924246.7509634-CDS-S-dermatodea_contig12399:5621..5686Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12399 5622..5686 -
1694079122.3531177-CDS-S-dermatodea_contig12399:5621..56861694079122.3531177-CDS-S-dermatodea_contig12399:5621..5686Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12399 5622..5686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12399.1499.1prot_S-dermatodea_contig12399.1499.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12399 112..5686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12399.1499.1

>prot_S-dermatodea_contig12399.1499.1 ID=prot_S-dermatodea_contig12399.1499.1|Name=mRNA_S-dermatodea_contig12399.1499.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=204bp
MELQLPKHYRGYNWYLLFSTFRDGASYMQLYNRIKAERPTFLIVESMCGE
VFGGFATSAWSSGCQYYGTGECFLFTLEGDRVKSTETAGNGEGEDGEGRA
LIDGDITTHEWTGMNTYLQYSDGDGMGMGGGGTEGAFGLFIGDDFLSGST
GTCDTFCNPPLCSKREFQISQVEVWGFSTADTEMGARLERLRKTLRGKTT
RPL*
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mRNA from alignment at S-dermatodea_contig12399:42..5797-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12399.1499.1 ID=mRNA_S-dermatodea_contig12399.1499.1|Name=mRNA_S-dermatodea_contig12399.1499.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5756bp|location=Sequence derived from alignment at S-dermatodea_contig12399:42..5797- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGCGGACGGGGGAGAATTTGTCCCCCCACCGGTGCGAACGGTTCCTGT
CAAACTGCCGGGACTTGTGGCGGGCGGAAGCACGATAGTGACGCATTCCA
CGCTCGCTCGCATGGAGCTCCAGCTGCCCAAGCATTACCGCGGCTACAAC
TGGTACCTGCTGTTCAGTACCTTCAGGTTGGTCTATCGCTGGGAATTCGA
TTCCGCTCCCACGTGTAAGACGACAATCGAGGCAATGTAGGCTATTATTT
GCGAGGTCGCACTGCTTTTTATGAGCAAAGGCGGGCGGACGGGCGGACGT
CATGAAATGCAATTTTACTGCCCCTGCTCGGTTCGCAAACATTCGCGAGA
GCTGATGCTTACGCAAGCTTCGCGGGGTGGTGCATCGCGTCTCGACGCGT
TCAGAATCGTTGCTGCTCGACCGCTAGCTATTATAGCGGCACAGGCTTTC
TTTTCTCGTGGAAATTGCCGCCCTCTCAGATGCGGCTGGCCGCCCCCGTC
CCGTGATGGTTTTGTATACTGAGCTAGCCCAGACACTACGCCCCGAAATG
CTGTACAAGAAGTACGTGATGGCCGTAAATGTGCCTCTAGCCACAAGTAA
CGTGTACTCCGGGAGTATTCTACGCGGCTGACTTTTGTCCCCGCTCGCTT
ATGTCGGTCATAACGCAGGGATGGCGCGAGCTACATGCAGCTCTACAACA
GGATTAAGGCGGAAAGGCCCACGTTCTTGATCGTGGAGAGCATGTGCGGC
GAGGTGTTTGGGGGGTTCGCGACGTCTGCGTGGTCCTCGGGATGCCAGGT
GAGAACGGCATCCACAGTTGAACTAAGTTGAACTACGGTACTTGAACGTT
ACGCTTCTCCAGTATGCTACTGCTGTACGCCGCGTTTCCTTGACCCCTTT
CGGAAGTTTTCTGAGTTTCGTTCGTTTTCGGGGTTAGGCCGTCTATATTT
TTTTTGTCCAGCGAAGTATTTATTGTTAGTAATATTGCGATACTGGTATT
ATTAATATTATTAGTGATGCCATGATACAGTGTAGTATTATTAGCAGTTT
TTTTGTCCAGCGAAGTATCTATTATTAGTAATATTGCGATACTGGTATTA
TTATTAATATTAATAGTGATACTATAGGTAGTATTATTAGCAGTGTTCAG
TGTTGTTAGTATTTTCACGTCGAATCGTGGCCGAACGATGGCTACGATGC
TCCTTGCCCCGCCATGTACACCATAGCCGCGGTGGAAACGTGATGATAAA
TAAACCTAGCCCTCAAATTGCCACCCACCGTGGTTGCACTGACTTGTGCA
CGCGATGTACTATCTATGCTATTCATACTATTAATACTGTACAGTACCCG
TAGTGACGATATTCTGCGCAAAAACGTACCAGTATATACTATACAATAGT
ATAGGCTCAGTCCCAAAAGGGTTCAGCTGGAAAATACAGTTGCATCGGGA
CGGGGCCTGTCGGACGTATCATACGCCGCGCTGTTCCAACGTCGCGTACT
TGGTTTCGTGGCTGCGTGTGCGTCTTTTGTTGCCACTTTTGGTCTGAAGC
CATGCCCTCCCGTGTGCCAACTCTCATTCGTATGCCATGCCCTCGCGTGC
GTTCCTTGGCACACAGAGCCATTCCAAGAAAACATTCGACCCACGAGCGT
ATTCAGACTTGCCATGCACAGTATTATTACAACAAGTTGCTCATTATTAT
AGCAAGTTGCTCATTCTGCTCATTCTGCGCATTCGGCCCATTCGGCCCAC
ACCGTGCTCAGACTTCCCACATACACGGAACTTAGCAAGTTGTTCATTAC
GCGGCGGGCCTCGCGGTTATCCCCCGCGTATGCATATCTGGGCGCTCCTT
CCGGAGGGTAGCACGTGTACGTAACCCTCGGACCGATCCCGCATCTTCCT
TCGTGCCTCTTCTCCGTGCACACAGCACGGAGTTGTCGACGGTGCTGTCA
CGAGAGCGTGTGTGCGCGCGCATGCATACGTTAAGAAACACAAACATGAA
GCAGGGGGAGGGAAAACACACACTATTAATAGCACAATACACAACGTAAG
CCTCTATAGGTTTGTTTAACATAGGTGTGTTTAACAGCTTGGACCGTCTT
CCCGTTTACAAAGGTGGAACCCCAACGCTCGCTCCCTGTCTTTGAGGTTG
TTTTAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTACAATATACAATGTACAATGTTGTGTGCGTGTGTGTAGTACAAACA
TTGTACAGTGAACATTGTACATTGTACACACACACACACACACACACACA
CACTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCAAACTTTCCTTTCC
CTCAAATTTTTCGTCGCTGCTACTATCGTGTTGTCCTGCCTTCCGTTCTG
TTTCGGCAACAGTATCACGAATCCGAAAAGTGTTTGCTTCCTGTTCTCGT
CCTTTCCCGCCAAAATATGCGTCGCTGCTATTACGGAGGAACACACTAAT
ATTAGTATAATAGTAATCAGGACTAAATATGACGACCAATGAATACCCTA
CTATTCCGATAATACCATGAATACACAAACAACAAAAATTTCGTGAAGAA
AGGAAAACACGAGGCATGTATGGCCGTATACAAGAACATCGACCATGAAA
TCTCGGCAATTCCAGCCTATTTTTGTTTTATCTAGGTTCAAACCTTGTGG
CAAAGTTAGACCTGTTAACGATTGATTTTGATTGTTTTTTTATTTGATTT
GGCACACGTATATGTCATCACCCGATCGGCTTAATCCGACCTATCCGACT
TGTGGTCAGACACGCAAAGAGTCAAGGAGAAAAACAAACTAATCAGAAGT
GTACTTCTACTATACACCGTACCGTCCCTGGTACTTACTACCAGTATGGT
ACAATAAATAAGAAATAGCACCCCAGATATAGAGAAAACGCTAGAAGAGA
ACTCGGACTCAAACAGTGCTCCCTCGCCTCTCCACAGGTCCTTTTTGAGC
TGTTAACTATGGTCCCCCGTGATAATAATAATATTAATCGTACTGCTCCT
GTATCTTCCGCGTGCCGTGCTTTCTTCCTTTTGTGTTTCGGCAACTACAG
TACTACGGAACCGGAGAGTGTTTCCTGTTCACGCTCGAGGGGGATCGCGT
TAAGTCCACGGAGACGGCCGGGAATGGAGAAGGAGAGGATGGAGAAGGCA
GGGCCCTCATAGACGGCGACATAACCACGCACGAGTGGACCGGAATGAAC
ACGTACCTGCAGTACAGCGACGGCGACGGAATGGGGATGGGGGGCGGGGG
CACGGAGGGCGCCTTCGGGCTGTTCATTGGCGATGACTTCCTCAGCGGCA
GCACGGGAACGTGAGTTCAGCGCTGCGTATCAGTATATACCGTTACGCTT
TTTTTGCCGAACCGAGCGCATGCGTGCATGGCTTTGGCTCAGGAGCATCC
CCCCATCTATGTTAGCAGAGTCGTCCCGATCAAAAAATATTTCCGAAGGT
AACATCGGGAGTACACGATATGATGTGAGAAGCTCCGCGGCTCCGCGAAC
GCACGTGCGCGAAAACACACACACGTTCGTGATGTCACTGCGTCGGTGGC
CCGGCTGGAGTGTTAACGTACACACATCGGCCCCGCTCCCTAAGCCACAA
GCCGGCAGGAGTGGTGTTAAAAGAGCGTTCCGTTTCGAGTCCCCGTTTAT
CATAGCACTGCGCGTAGGTCAGGGATGCCGCGTACGCATCGCGCCAGAAC
GCAAGGGCAATGTTGGGGTGTAGTGATCCATCCGCTGCACACACACGTTG
ACACGTTTTTTCCGGTCGCCGCGCGCTTTCCATTTCATTTCGCCGGAACG
CTCAGGTGCGACACGTTCTGCAACCCCCCGCTTTGCTCCAAGCGGGAGTT
CCAAATCTCGCAAGTGGAGGTGAGATGGGTTTGGACGAGAGGACGCCCCC
AACGGGGCCCTGAATGTGGCCAGAATATACATTGTAGGGGTTTCCAACGG
AGGAGGCATTTGTACGGAGTGGTCTAATTTTTGCGTAGATGTACTGACAA
TTGACCTGACAAGAACGTTATGTACACCTTACGCTGACAAAAGCGTACTC
GTTTGGAGGGGAACGAGACCCATGCTCTCGTCGGTCCACCTGCCGCAACA
AAACTGGCTGTGATGGCCGAGATCGTAACGTTGGATGTATCACGAGAGGT
CAGCTTCTGAGACATCCTATTGATACAAATACTAGAAGAGGAGCCAGCGG
GAGAAGATGGAGCTTCTTCTTACTACATCTGCCGAACCTCGGTTTCGCCG
TTGGCAGGGGTCGATTGGAAACGTGGCCACCACCGACTGACGTTGTCTTG
CCATGTAGGATGTTTTGCTCGCACATAGTCGAAAGCTGAACCGGTACAGC
ATGCCGTACTTAAATATATACTTCGAAGTATATACACAAGGTTTCTGCGG
CTGACGCCGCAACGCCTAAAGAATGACGGCGACTCCAAGGCCAAAGAAAA
CGGTACGGCAGTTATATGTAATATAAAAAAACAGAAAGTTCTGTGTCTTT
ATAAAAAAAAGAGCAGAAACCGCCTCACAGGCGCTGCAGATGGAGGAACA
TGAGCATAATGGTGTGTGGTTTTTTCACCGCGCCGAGCCTTCTTGCTTCT
TCCGAGGGTCGCTCGGTGCGGGCGCGGGTCGGCGCAGAGAGAGGGCATTC
GTATCCACGAAGAAAAATCGTGCGAGCAATCGTCGCGCCGCTGCCACAGC
AGTACAGCAGTATCATAGCGCACACTGCTGCAGCAGAGCCGCCGCCACAG
CAGTAGTAGCGTACACTGCTGCAGTGCAGTAGAGATGGCAAACTAACTAC
AACAGCAGACCAGCTGCAGTGCTGACAACTACGCTGCAGCAGCGATGACG
ATCTAGAGACGCTGCAAGGCCGTTAGCCGTCTCCCTCGCGTCAGTACCAT
TCATCGTCGCCGCGCTGCCAAGCCGCGGCGTGGTGTACACATGGCATGCA
TGTGCTGCAGGTTGTCCTGTTTCAAACCCTCCCCGTTTTTCTGTCGGTAT
TATAATAAGTGTATTGCTTGTAGTATGTGAGCAATCGGAAATCCGCCTAA
TGTTTTTTTGTCGTATAGGATAGTGTCCCTCTAAATCGCTATAAAATAGT
AAGTGTATTGCTTTTAGTATGTGGGCAGTCGGATATCGGCCTTAAAAAAT
ATTATCGTATAGGATAGTGTCCGCAGGCCCTCTAAATCGCTATTAAAAAA
TGTCGGAAGATGGTCCGAAAATTATTTATCACTGAGATATGAGAGAAGCG
GGAAAACGATGGTCCGCACGCAGCTCTGACAGCGAGCGCTGAGAAGAGAA
TGCTGGCCTGTGGTGAGCCGAGAGCGGGATGGTGCTCCGCACGCAGGTTT
CTTAGCAAAAAGACAATTGTAAAAATATCTATATACTGTATCTCAAAACT
GCTTTTTGACCTGTCAGGACCAAGAGTCAAAGAGGAGGCGTTCCTAACCG
TGTGCCTTGCGTGGTTATTCACAAGCGTCCGCCCGCCTTTCCCGCTCCTC
TCTACTCCGATGTACAACGCACTCCTCGCCGTCGTCTTGACAGGTCTGGG
GTTTCAGCACTGCTGATACCGAGATGGGTGCCCGCTTGGAGCGCTTGAGA
AAGACGCTCAGGGGTAAAACCACTCGGCCGTTGTGACGCGCGGGAGCCGA
TGCTATTAGTTTGAGGTTGCGGGAGGGAAATATTTGTGGATTGATGACGC
CGCGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12399:42..5797-

>mRNA_S-dermatodea_contig12399.1499.1 ID=mRNA_S-dermatodea_contig12399.1499.1|Name=mRNA_S-dermatodea_contig12399.1499.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at S-dermatodea_contig12399:42..5797- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCTCCAGCTGCCCAAGCATTACCGCGGCTACAACTGGTACCTGCT
GTTCAGTACCTTCAGATGGAGCTCCAGCTGCCCAAGCATTACCGCGGCTA
CAACTGGTACCTGCTGTTCAGTACCTTCAGGGATGGCGCGAGCTACATGC
AGCTCTACAACAGGATTAAGGCGGAAAGGCCCACGTTCTTGATCGTGGAG
AGCATGTGCGGCGAGGTGTTTGGGGGGTTCGCGACGTCTGCGTGGTCCTC
GGGATGCCAGGGATGGCGCGAGCTACATGCAGCTCTACAACAGGATTAAG
GCGGAAAGGCCCACGTTCTTGATCGTGGAGAGCATGTGCGGCGAGGTGTT
TGGGGGGTTCGCGACGTCTGCGTGGTCCTCGGGATGCCAGTACTACGGAA
CCGGAGAGTGTTTCCTGTTCACGCTCGAGGGGGATCGCGTTAAGTCCACG
GAGACGGCCGGGAATGGAGAAGGAGAGGATGGAGAAGGCAGGGCCCTCAT
AGACGGCGACATAACCACGCACGAGTGGACCGGAATGAACACGTACCTGC
AGTACAGCGACGGCGACGGAATGGGGATGGGGGGCGGGGGCACGGAGGGC
GCCTTCGGGCTGTTCATTGGCGATGACTTCCTCAGCGGCAGCACGGGAAC
TACTACGGAACCGGAGAGTGTTTCCTGTTCACGCTCGAGGGGGATCGCGT
TAAGTCCACGGAGACGGCCGGGAATGGAGAAGGAGAGGATGGAGAAGGCA
GGGCCCTCATAGACGGCGACATAACCACGCACGAGTGGACCGGAATGAAC
ACGTACCTGCAGTACAGCGACGGCGACGGAATGGGGATGGGGGGCGGGGG
CACGGAGGGCGCCTTCGGGCTGTTCATTGGCGATGACTTCCTCAGCGGCA
GCACGGGAACGTGCGACACGTTCTGCAACCCCCCGCTTTGCTCCAAGCGG
GAGTTCCAAATCTCGCAAGTGGAGGTGCGACACGTTCTGCAACCCCCCGC
TTTGCTCCAAGCGGGAGTTCCAAATCTCGCAAGTGGAGGTCTGGGGTTTC
AGCACTGCTGATACCGAGATGGGTGCCCGCTTGGAGCGCTTGAGAAAGAC
GCTCAGGGGTAAAACCACTCGGCCGTTGTGAGTCTGGGGTTTCAGCACTG
CTGATACCGAGATGGGTGCCCGCTTGGAGCGCTTGAGAAAGACGCTCAGG
GGTAAAACCACTCGGCCGTTGTGA
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