mRNA_S-dermatodea_contig12393.1498.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12393.1498.1
Unique NamemRNA_S-dermatodea_contig12393.1498.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12393.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12393contigS-dermatodea_contig12393:3132..4359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12393.1498.1prot_S-dermatodea_contig12393.1498.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12393 3132..4357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.654007-CDS-S-dermatodea_contig12393:3131..31701622924246.654007-CDS-S-dermatodea_contig12393:3131..3170Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12393 3132..3170 +
1694079122.259452-CDS-S-dermatodea_contig12393:3131..31701694079122.259452-CDS-S-dermatodea_contig12393:3131..3170Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12393 3132..3170 +
1622924246.6650872-CDS-S-dermatodea_contig12393:3694..38431622924246.6650872-CDS-S-dermatodea_contig12393:3694..3843Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12393 3695..3843 +
1694079122.271838-CDS-S-dermatodea_contig12393:3694..38431694079122.271838-CDS-S-dermatodea_contig12393:3694..3843Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12393 3695..3843 +
1622924246.6750584-CDS-S-dermatodea_contig12393:4188..43571622924246.6750584-CDS-S-dermatodea_contig12393:4188..4357Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12393 4189..4357 +
1694079122.280351-CDS-S-dermatodea_contig12393:4188..43571694079122.280351-CDS-S-dermatodea_contig12393:4188..4357Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12393 4189..4357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12393.1498.1

>prot_S-dermatodea_contig12393.1498.1 ID=prot_S-dermatodea_contig12393.1498.1|Name=mRNA_S-dermatodea_contig12393.1498.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
KDDDDEGDDDDVENELCASRYYDYILGSSASFCDRVGASLCCDIGDSSEA
AACLEDPLVAKSWDCLMEELGCSVEDMPCSGGEGVTLTEPPAISVTPAPS
APTREIVAPTAPPSTVAPT
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mRNA from alignment at S-dermatodea_contig12393:3132..4359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12393.1498.1 ID=mRNA_S-dermatodea_contig12393.1498.1|Name=mRNA_S-dermatodea_contig12393.1498.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1228bp|location=Sequence derived from alignment at S-dermatodea_contig12393:3132..4359+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGACGATGACGATGAGGGCGACGACGATGACGTCGAGGTAAATTTTGT
ATTCCTTCGATTATAGTACTTTTTTACGGCTTCCTTGGTTTTCTTAGCAG
CGCGAATCGCTGTCACACGCGCCGTCCTTCGCTGTTCGTATGCTTCTTAG
CATAGTATAGTATATACAATCCGGGCCGGAAACCACGCCCTCCAAAATTC
CCGCTTGCACCGAAAGGCTGGTGTCTGCTCGATACCGTACGCGTACGACG
CAACCGATCTTGTGAGCTATTCTGATCGACCGTACCGCGTTAACATATAT
TTGTTTGTGCGGTCGGTCCACTCGTCGGTTGCTCCAGCTTTCGTATACAA
TGCACATATGTTGCAGCACAGCAAAGCTCTATACGAGAGAACAATTGATT
TAGCAGAGTGAAAACATAAACGACATGAACCCGAGCATCGACATGACACT
GCCGGACTACCGTGGAAGGCGTCGTCGCGTTTCGTGCCGAACTCACAGCA
TGCACACACTAATTGCGCCCTCTCCCCTCCCCCTCCTCCTGTTGAACGTG
CCCGTTGCGACAGAACGAGCTGTGCGCGTCGCGTTACTACGATTACATCT
TGGGTTCGTCCGCATCGTTCTGTGACCGCGTCGGGGCGTCGCTCTGCTGC
GATATCGGCGACAGTTCGGAGGCGGCGGCTTGCCTGGAAGACCCGCTGGT
GGCGAAATCGTGGTACGTGCTTGCTGGCTGCGCGTTGCGTGTGGTCGGAG
TGCACCTCAGGGAGCGCTTATGCGTACAGCAGTGTAGCAGCAGCGACGCA
TTCAATTGTTGTATGGGGTCTAGATATTTTGCCGGGTCATGGCGTCGAGA
GATAACGTTTCGTCGCATGCATGTCCCAGGTGTGCGCTGTTGCGGAGGTG
GTACTTGTGGCCCTTTTTCCTTGTTTCTCGCCAAAAGACGGCTGTGCGTA
CGTGGCTTTTACTTAAACCATACGCTAACAAGAACAACCACCACACCGCC
ACACGCGCCATTTCCTCGTCGCTTCTCTTCTTCGCGCCTGTCTGCCGTCT
TACGCAGGGATTGCTTGATGGAAGAGCTAGGGTGCTCCGTGGAAGACATG
CCTTGCTCCGGAGGAGAGGGCGTCACCTTGACGGAACCGCCGGCGATCAG
CGTCACTCCGGCCCCTTCGGCGCCGACCCGAGAAATCGTGGCCCCGACAG
CACCCCCTTCGACAGTGGCGCCGACGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12393:3132..4359+

>mRNA_S-dermatodea_contig12393.1498.1 ID=mRNA_S-dermatodea_contig12393.1498.1|Name=mRNA_S-dermatodea_contig12393.1498.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig12393:3132..4359+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGACGATGACGATGAGGGCGACGACGATGACGTCGAGAAGGACGATGA
CGATGAGGGCGACGACGATGACGTCGAGAACGAGCTGTGCGCGTCGCGTT
ACTACGATTACATCTTGGGTTCGTCCGCATCGTTCTGTGACCGCGTCGGG
GCGTCGCTCTGCTGCGATATCGGCGACAGTTCGGAGGCGGCGGCTTGCCT
GGAAGACCCGCTGGTGGCGAAATCGTGAACGAGCTGTGCGCGTCGCGTTA
CTACGATTACATCTTGGGTTCGTCCGCATCGTTCTGTGACCGCGTCGGGG
CGTCGCTCTGCTGCGATATCGGCGACAGTTCGGAGGCGGCGGCTTGCCTG
GAAGACCCGCTGGTGGCGAAATCGTGGGATTGCTTGATGGAAGAGCTAGG
GTGCTCCGTGGAAGACATGCCTTGCTCCGGAGGAGAGGGCGTCACCTTGA
CGGAACCGCCGGCGATCAGCGTCACTCCGGCCCCTTCGGCGCCGACCCGA
GAAATCGTGGCCCCGACAGCACCCCCTTCGACAGTGGCGCCGACGGGATT
GCTTGATGGAAGAGCTAGGGTGCTCCGTGGAAGACATGCCTTGCTCCGGA
GGAGAGGGCGTCACCTTGACGGAACCGCCGGCGATCAGCGTCACTCCGGC
CCCTTCGGCGCCGACCCGAGAAATCGTGGCCCCGACAGCACCCCCTTCGA
CAGTGGCGCCGACG
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