mRNA_S-dermatodea_contig1239.1496.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1239.1496.1
Unique NamemRNA_S-dermatodea_contig1239.1496.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Match: A0A6H5JTL5_9PHAE (5-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL5_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 3.170e-51
Identity = 80/122 (65.57%), Postives = 97/122 (79.51%), Query Frame = 1
Query:   10 ANDIRPPITSHALDTATGRPAEGLPLKLERQVGGP-GGGDWCLMGSTTTNDDGRAPGLIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRVENTSEHLHIPLLLSPFGYSTYKGS 372
            A   RPPIT+HALDT+TG+PA GLPLKLE++ GG  GGG W L+GS  TN+DGRAP L+  G +L + TYRVTFDTE+YF   G++CFYPEV ++FRVE   EH HIPLL+SPFGYSTY+GS
Sbjct:   32 AATARPPITAHALDTSTGKPACGLPLKLEQKSGGGRGGGYWLLLGSCETNEDGRAPRLLDAGHKLSKATYRVTFDTEAYFETAGSRCFYPEVAIVFRVEEPEEHYHIPLLISPFGYSTYRGS 153          
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Match: A0A836CBZ0_9STRA (5-hydroxyisourate hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ0_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.830e-40
Identity = 63/117 (53.85%), Postives = 83/117 (70.94%), Query Frame = 1
Query:   22 RPPITSHALDTATGRPAEGLPLKLERQVGGPGGGDWCLMGSTTTNDDGRAPGLIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRVENTSEHLHIPLLLSPFGYSTYKGS 372
            R PITSH LDTA GRPAEG+P+ L        G  W ++GST T+ DGRAPGL+     +  G Y++TFDT +YF   G Q FYPEVT++F +++ S+H H+PLLL+P+GYSTY+GS
Sbjct:   30 RSPITSHVLDTARGRPAEGVPMVLHAL----NGASWTVLGSTLTDSDGRAPGLLPANAVIRPGVYKITFDTAAYFGAIGVQAFYPEVTIVFEIDDASQHYHVPLLLNPYGYSTYRGS 142          
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Match: UPI00198DDD0A (Hydroxyisourate hydrolase n=1 Tax=Leptolyngbya sp. TaxID=47254 RepID=UPI00198DDD0A)

HSP 1 Score: 128 bits (321), Expect = 6.060e-36
Identity = 60/114 (52.63%), Postives = 82/114 (71.93%), Query Frame = 1
Query:   31 ITSHALDTATGRPAEGLPLKLERQVGGPGGGDWCLMGSTTTNDDGRAPGLIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRVENTSEHLHIPLLLSPFGYSTYKGS 372
            ITSH LD + GRPAEG+P+ LE+QV      +W  +   +TN DGRAP L+  G +L  G Y++TF+T+ YF  TG + FYPEV V+F +++ ++H H+PLLLSPFGYSTY+GS
Sbjct:    4 ITSHILDVSRGRPAEGVPIVLEKQVAD----NWQEVSKASTNSDGRAPDLLKDGLKLEVGIYKLTFNTKKYFESTGQKGFYPEVPVVFEIKDATQHYHVPLLLSPFGYSTYRGS 113          
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Match: A0A7S0W1Y3_9CRYP (5-hydroxyisourate hydrolase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W1Y3_9CRYP)

HSP 1 Score: 128 bits (321), Expect = 1.400e-35
Identity = 66/124 (53.23%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    4 PSANDIRPPITSHALDTATGRPAEGLPLKLERQVGGPGGGDWCLMGSTTTNDDGRAPG-LIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRVENTSEHLHIPLLLSPFGYSTYKGS 372
            P A   RPPITSH LD  TG+PA G+ + LE    G   G W  +G+  TN DGR    L+   +   RGTYR TFDT +YF   G +CFYP V ++F +EN SEH HIPLLLSP+GYSTY+GS
Sbjct:   20 PDAQQRRPPITSHVLDQVTGKPAVGVRVVLEMLDAG--SGQWREVGADVTNSDGRCGRQLVGAMSVAQRGTYRCTFDTAAYFSKMGGKCFYPFVPIIFVIENPSEHYHIPLLLSPYGYSTYRGS 141          
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Match: A0A4P9XME0_9FUNG (5-hydroxyisourate hydrolase n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XME0_9FUNG)

HSP 1 Score: 126 bits (317), Expect = 4.080e-35
Identity = 63/127 (49.61%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   19 IRPPITSHALDTATGRPAEGLPLKLE-------RQVGGPGGGD--WCLMGSTTTNDDGRAPGLIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRVENTSEHLHIPLLLSPFGYSTYKGS 372
            +RPPITSH LDT  GRPA+G+P+ LE           G    D  W L+G + TN+DGR P L++   +L  G YRVTF+T++Y+   G QCFYP V V+F +    +H HIPLLLSP+ YSTY+GS
Sbjct:    4 VRPPITSHVLDTGRGRPAKGVPVTLEYADAAAASSTSGAKKNDIVWSLLGRSETNEDGRCPQLMSAEHQLKPGLYRVTFNTKAYYTKHGEQCFYPYVQVVFELTQPEDHYHIPLLLSPYSYSTYRGS 130          
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Match: A0A538SMP0_9BACT (5-hydroxyisourate hydrolase n=1 Tax=Candidatus Eisenbacteria bacterium TaxID=2212470 RepID=A0A538SMP0_9BACT)

HSP 1 Score: 125 bits (315), Expect = 5.100e-35
Identity = 58/115 (50.43%), Postives = 82/115 (71.30%), Query Frame = 1
Query:   28 PITSHALDTATGRPAEGLPLKLERQVGGPGGGDWCLMGSTTTNDDGRAPGLIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRVENTSEHLHIPLLLSPFGYSTYKGS 372
            PIT+H LD A GRPA G+ ++LER+ G  G   W ++   TT++DGR   L+  G  L RG YR+TF+T +YF++ G   FYPEVTV+F V + ++H H+PLL+SP+G+STY+GS
Sbjct:    3 PITTHVLDLALGRPAPGVAVRLERRDGSSG---WVMLAERTTDEDGRVRDLLDGGPALERGQYRLTFETGAYFKVFGMMTFYPEVTVLFEVRDPTQHYHVPLLVSPYGFSTYRGS 114          
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Match: A0A2V8LGQ4_9BACT (5-hydroxyisourate hydrolase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8LGQ4_9BACT)

HSP 1 Score: 125 bits (314), Expect = 7.020e-35
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = 1
Query:   31 ITSHALDTATGRPAEGLPLKLERQVGGPGGGDWCLMGSTTTNDDGRAPGLIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRVENTSEHLHIPLLLSPFGYSTYKGS 372
            IT+H LDT+ GRPAEG+P  LE +  G     W L+G  TTN DGR   L++  T L  G YR+ FDT  YF     + FYP+VTV+FR+E+  +H H+PLLLSPFGYSTY+GS
Sbjct:    4 ITTHVLDTSRGRPAEGVPATLEIEAAG----GWKLIGKGTTNADGRITDLVSNETNLSAGVYRLIFDTARYFANQQTESFYPQVTVVFRIEDPVQHYHVPLLLSPFGYSTYRGS 113          
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Match: A0A7S1DRU5_HEMAN (5-hydroxyisourate hydrolase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DRU5_HEMAN)

HSP 1 Score: 126 bits (316), Expect = 8.520e-35
Identity = 66/124 (53.23%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    4 PSANDIRPPITSHALDTATGRPAEGLPLKLERQVGGPGGGDWCLMGSTTTNDDGRAPG-LIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRVENTSEHLHIPLLLSPFGYSTYKGS 372
            P A   RPPITSH LD  +G+PA G+ + LE     P  G W  +GS  TN DGR    L+   T   +GTY+ TFDT SYF   G +CFYP V ++F +E  SEH HIPLLLSPFGYSTY+GS
Sbjct:   22 PDAQQRRPPITSHVLDQVSGKPAVGVKVVLEMLD--PRSGQWRELGSDVTNSDGRCGRQLVGAMTVAEKGTYKCTFDTASYFARMGGKCFYPFVPIIFVIEAPSEHYHIPLLLSPFGYSTYRGS 143          
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Match: A0A2V8QET8_9BACT (5-hydroxyisourate hydrolase n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8QET8_9BACT)

HSP 1 Score: 124 bits (312), Expect = 1.410e-34
Identity = 59/114 (51.75%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   31 ITSHALDTATGRPAEGLPLKLERQVGGPGGGDWCLMGSTTTNDDGRAPGLIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRVENTSEHLHIPLLLSPFGYSTYKGS 372
            IT+H LDTA GRP  GLP+ LE +  G     W L+G  TTN DGR   L+   T +  G YR+ FDT  YF       FYP+VT++F++EN ++H H+PLLLSPFGYSTY+GS
Sbjct:    4 ITTHVLDTARGRPGAGLPVTLEVEAAG----GWKLVGKGTTNADGRISDLVPNETAIEAGVYRLIFDTARYFANNNVDAFYPQVTIVFKIENPAQHYHVPLLLSPFGYSTYRGS 113          
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Match: A0A2W4K307_9BACT (5-hydroxyisourate hydrolase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A2W4K307_9BACT)

HSP 1 Score: 124 bits (311), Expect = 2.010e-34
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   31 ITSHALDTATGRPAEGLPLKLERQVGGPGGGDWCLMGSTTTNDDGRAPGLIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRVENTSEHLHIPLLLSPFGYSTYKGS 372
            ITSH LD + G+PA+G+PL LER   G     W  +  T+TN DGRAP L   G +L  G YR+TFDT++YF   G + FYP V ++F +++ ++H H+PLL+SPF YSTY+GS
Sbjct:    4 ITSHVLDASRGKPAQGVPLVLERNTDG----KWVELSKTSTNSDGRAPDLWTDGMKLDTGIYRLTFDTKNYFDSIGVKGFYPHVAIVFEIDDATQHYHVPLLISPFSYSTYRGS 113          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1239.1496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTL5_9PHAE3.170e-5165.575-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp.... [more]
A0A836CBZ0_9STRA2.830e-4053.855-hydroxyisourate hydrolase n=1 Tax=Tribonema minu... [more]
UPI00198DDD0A6.060e-3652.63Hydroxyisourate hydrolase n=1 Tax=Leptolyngbya sp.... [more]
A0A7S0W1Y3_9CRYP1.400e-3553.235-hydroxyisourate hydrolase n=1 Tax=Hemiselmis tep... [more]
A0A4P9XME0_9FUNG4.080e-3549.615-hydroxyisourate hydrolase n=1 Tax=Thamnocephalis... [more]
A0A538SMP0_9BACT5.100e-3550.435-hydroxyisourate hydrolase n=1 Tax=Candidatus Eis... [more]
A0A2V8LGQ4_9BACT7.020e-3553.515-hydroxyisourate hydrolase n=1 Tax=Acidobacteria ... [more]
A0A7S1DRU5_HEMAN8.520e-3553.235-hydroxyisourate hydrolase n=2 Tax=Hemiselmis and... [more]
A0A2V8QET8_9BACT1.410e-3451.755-hydroxyisourate hydrolase n=2 Tax=Acidobacteria ... [more]
A0A2W4K307_9BACT2.010e-3450.005-hydroxyisourate hydrolase n=1 Tax=Candidatus Mel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1239contigS-dermatodea_contig1239:16295..17435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue7.5e-27
Seed eggNOG ortholog55529.EKX45231
KEGG rclassRC03393
KEGG koko:K07127
KEGG TC9.B.35.1.2,9.B.35.2
KEGG ReactionR06601
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
EggNOG free text desc.thyroid hormone binding
EggNOG OGsCOG2351@1,KOG3006@2759
EC3.5.2.17
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTransthyretin/hydroxyisourate hydrolase, superfamily
Ec32 orthologEc-00_003340.1
Exons2
Model size375
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.5337777-CDS-S-dermatodea_contig1239:16294..164891622924246.5337777-CDS-S-dermatodea_contig1239:16294..16489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1239 16295..16489 +
1694079122.1688743-CDS-S-dermatodea_contig1239:16294..164891694079122.1688743-CDS-S-dermatodea_contig1239:16294..16489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1239 16295..16489 +
1622924246.5452163-CDS-S-dermatodea_contig1239:17255..174351622924246.5452163-CDS-S-dermatodea_contig1239:17255..17435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1239 17256..17435 +
1694079122.187042-CDS-S-dermatodea_contig1239:17255..174351694079122.187042-CDS-S-dermatodea_contig1239:17255..17435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1239 17256..17435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1239.1496.1prot_S-dermatodea_contig1239.1496.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1239 16295..17435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1239.1496.1

>prot_S-dermatodea_contig1239.1496.1 ID=prot_S-dermatodea_contig1239.1496.1|Name=mRNA_S-dermatodea_contig1239.1496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
MPSANDIRPPITSHALDTATGRPAEGLPLKLERQVGGPGGGDWCLMGSTT
TNDDGRAPGLIAVGTELLRGTYRVTFDTESYFRLTGAQCFYPEVTVMFRV
ENTSEHLHIPLLLSPFGYSTYKGS*
back to top

mRNA from alignment at S-dermatodea_contig1239:16295..17435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1239.1496.1 ID=mRNA_S-dermatodea_contig1239.1496.1|Name=mRNA_S-dermatodea_contig1239.1496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1141bp|location=Sequence derived from alignment at S-dermatodea_contig1239:16295..17435+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGTCAGCCAACGACATCCGCCCGCCGATCACGTCTCACGCCCTAGA CACGGCAACTGGCCGCCCGGCCGAGGGCCTACCCCTCAAGCTCGAGCGGC AAGTTGGAGGACCGGGAGGGGGGGATTGGTGTCTAATGGGGAGCACCACT ACGAACGACGATGGGCGAGCGCCGGGTCTCATTGCGGTCGGAACTGTGAG TGTACAGACAAGAACGAACTACTTGTACTTGAAGAACAAGTATTAGAAAA CTATAATATATACAAACTGCACACCCCGCCCAAGACACGACGGTGCTGCC CTCGCTCCCTTGCATTGGCAACTACAGCAGTAACTCGTGTCTGCTGTGTA GGGTTGCGGTGATGTGTTCGCGTGGGGTTTAGGGTTTGGCCGCCTGCTTA CACGTTCTAGGCTGCCGTTAAGTGCCAACGCCTGGACGAACTTGTCCTTC ACGCACACTTAATGGCAAACAGTTGCGTGCGCATCGGTCGCCAGCCTGCG TTTTCCTTTTGCTGGGATTTTCGAATACACTGAAATGTATCTCGCCGAGG CGAGTCTGGGTCGCAACACAGGGACACCTGGGCGTGCCTGTCCGGAAACC GGGAGGGATCGTCGGGACGCAGCCTCAAAGTCGTAGCCTCAGCAACAATG TTCGCCTGAGATGCAGCAACATATCAAACACCAAGGTTTTTATGCGTCGG TGTGTTGCGGAAGCGCGGGGCCGCTCTTGAATGAAATGATAGGGTGCTCC TTGCGGGGTAGCATGCTGAGCTCTCTACAACACTAAGTACCTGGTAGCAC TCATCATGTTCAGAACGTATGCGTCGAGTACAACCCCAATGCCGCCCCAG GGGCGTTTGTGCGCACACGCTGGATGGATTGCACAAATGCACGCCACGCG GAGGTCCGCAATCAACTGCACAGCTGAATAATTTCCCATCGATAAAATCT CTGCCGCTCAGGAGCTGCTGAGGGGAACTTACCGCGTCACGTTCGACACG GAGTCGTACTTTCGCCTGACGGGCGCCCAATGCTTTTATCCGGAGGTGAC GGTCATGTTCCGGGTGGAAAACACATCGGAGCACCTTCACATCCCCTTGC TCCTCAGTCCTTTCGGGTATTCGACCTACAAAGGTAGCTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1239:16295..17435+

>mRNA_S-dermatodea_contig1239.1496.1 ID=mRNA_S-dermatodea_contig1239.1496.1|Name=mRNA_S-dermatodea_contig1239.1496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig1239:16295..17435+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGTCAGCCAACGACATCCGCCCGCCGATCACGTCTCACGCCCTAGA
CACGGCAACTGGCCGCCCGGCCGAGGGCCTACCCCTCAAGCTCGAGCGGC
AAGTTGGAGGACCGGGAGGGGGGGATTGGTGTCTAATGGGGAGCACCACT
ACGAACGACGATGGGCGAGCGCCGGGTCTCATTGCGGTCGGAACTATGCC
GTCAGCCAACGACATCCGCCCGCCGATCACGTCTCACGCCCTAGACACGG
CAACTGGCCGCCCGGCCGAGGGCCTACCCCTCAAGCTCGAGCGGCAAGTT
GGAGGACCGGGAGGGGGGGATTGGTGTCTAATGGGGAGCACCACTACGAA
CGACGATGGGCGAGCGCCGGGTCTCATTGCGGTCGGAACTGAGCTGCTGA
GGGGAACTTACCGCGTCACGTTCGACACGGAGTCGTACTTTCGCCTGACG
GGCGCCCAATGCTTTTATCCGGAGGTGACGGTCATGTTCCGGGTGGAAAA
CACATCGGAGCACCTTCACATCCCCTTGCTCCTCAGTCCTTTCGGGTATT
CGACCTACAAAGGTAGCTAGGAGCTGCTGAGGGGAACTTACCGCGTCACG
TTCGACACGGAGTCGTACTTTCGCCTGACGGGCGCCCAATGCTTTTATCC
GGAGGTGACGGTCATGTTCCGGGTGGAAAACACATCGGAGCACCTTCACA
TCCCCTTGCTCCTCAGTCCTTTCGGGTATTCGACCTACAAAGGTAGCTAG
back to top