mRNA_S-dermatodea_contig12387.1494.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12387.1494.1
Unique NamemRNA_S-dermatodea_contig12387.1494.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12387.1494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12387contigS-dermatodea_contig12387:4306..4785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size480
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12387.1494.1prot_S-dermatodea_contig12387.1494.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12387 4407..4715 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.3272107-UTR-S-dermatodea_contig12387:4305..44061622924246.3272107-UTR-S-dermatodea_contig12387:4305..4406Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12387 4306..4406 +
1694079122.026247-UTR-S-dermatodea_contig12387:4305..44061694079122.026247-UTR-S-dermatodea_contig12387:4305..4406Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12387 4306..4406 +
1622924246.351687-UTR-S-dermatodea_contig12387:4715..47851622924246.351687-UTR-S-dermatodea_contig12387:4715..4785Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12387 4716..4785 +
1694079122.043366-UTR-S-dermatodea_contig12387:4715..47851694079122.043366-UTR-S-dermatodea_contig12387:4715..4785Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12387 4716..4785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.339472-CDS-S-dermatodea_contig12387:4406..47151622924246.339472-CDS-S-dermatodea_contig12387:4406..4715Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12387 4407..4715 +
1694079122.0349448-CDS-S-dermatodea_contig12387:4406..47151694079122.0349448-CDS-S-dermatodea_contig12387:4406..4715Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12387 4407..4715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12387.1494.1

>prot_S-dermatodea_contig12387.1494.1 ID=prot_S-dermatodea_contig12387.1494.1|Name=mRNA_S-dermatodea_contig12387.1494.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
MVQQVRGSVLLLRVVCGVMCKQNLQQHIEFFIFSLSTTACVYVSFAPRGS
DRLHREMRKGHRCLLSCPAVDRGGVVSYSTPVLDTFDLCVQRNFVSARGA
GA*
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mRNA from alignment at S-dermatodea_contig12387:4306..4785+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12387.1494.1 ID=mRNA_S-dermatodea_contig12387.1494.1|Name=mRNA_S-dermatodea_contig12387.1494.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig12387:4306..4785+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGCCACCTTTGCAAAAGAAGGAAGGAACGATTGGCCATCGGCGATAGA
TCGATCCTGTGGGAGCAATGCTCTGTCCTCCCCAGGGCAGACGCGTGGTC
AATGGTCCAACAGGTGAGAGGCTCTGTCCTGCTGTTGCGTGTGGTGTGTG
GCGTAATGTGTAAACAAAATCTGCAGCAGCATATCGAGTTTTTCATTTTT
TCACTCTCGACCACCGCGTGTGTGTATGTATCGTTTGCACCTCGTGGGAG
CGACAGACTACACCGGGAGATGCGAAAAGGACACAGATGCCTCCTCTCGT
GTCCAGCGGTTGACCGTGGAGGCGTAGTATCATACAGCACACCAGTACTT
GACACTTTTGATCTCTGCGTACAACGAAATTTTGTTTCGGCTCGCGGAGC
AGGTGCATGAGAGATAGGGCCTTCGAACCAAGGGCAGGGCCATCCTGCTG
TGTCCTGAGCTCAGCCGTGGAAGGGTTGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12387:4306..4785+

>mRNA_S-dermatodea_contig12387.1494.1 ID=mRNA_S-dermatodea_contig12387.1494.1|Name=mRNA_S-dermatodea_contig12387.1494.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig12387:4306..4785+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCCAACAGGTGAGAGGCTCTGTCCTGCTGTTGCGTGTGGTGTGTGG
CGTAATGTGTAAACAAAATCTGCAGCAGCATATCGAGTTTTTCATTTTTT
CACTCTCGACCACCGCGTGTGTGTATGTATCGTTTGCACCTCGTGGGAGC
GACAGACTACACCGGGAGATGCGAAAAGGACACAGATGCCTCCTCTCGTG
TCCAGCGGTTGACCGTGGAGGCGTAGTATCATACAGCACACCAGTACTTG
ACACTTTTGATCTCTGCGTACAACGAAATTTTGTTTCGGCTCGCGGAGCA
GGTGCATGAATGGTCCAACAGGTGAGAGGCTCTGTCCTGCTGTTGCGTGT
GGTGTGTGGCGTAATGTGTAAACAAAATCTGCAGCAGCATATCGAGTTTT
TCATTTTTTCACTCTCGACCACCGCGTGTGTGTATGTATCGTTTGCACCT
CGTGGGAGCGACAGACTACACCGGGAGATGCGAAAAGGACACAGATGCCT
CCTCTCGTGTCCAGCGGTTGACCGTGGAGGCGTAGTATCATACAGCACAC
CAGTACTTGACACTTTTGATCTCTGCGTACAACGAAATTTTGTTTCGGCT
CGCGGAGCAGGTGCATGA
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