mRNA_S-dermatodea_contig12385.1492.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12385.1492.1
Unique NamemRNA_S-dermatodea_contig12385.1492.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12385.1492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12385contigS-dermatodea_contig12385:4431..5049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size619
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12385.1492.1prot_S-dermatodea_contig12385.1492.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12385 4599..4994 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.2109945-UTR-S-dermatodea_contig12385:4430..45981622924246.2109945-UTR-S-dermatodea_contig12385:4430..4598Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12385 4431..4598 +
1694079121.9665158-UTR-S-dermatodea_contig12385:4430..45981694079121.9665158-UTR-S-dermatodea_contig12385:4430..4598Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12385 4431..4598 +
1622924246.2297945-UTR-S-dermatodea_contig12385:4994..50491622924246.2297945-UTR-S-dermatodea_contig12385:4994..5049Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12385 4995..5049 +
1694079121.9844675-UTR-S-dermatodea_contig12385:4994..50491694079121.9844675-UTR-S-dermatodea_contig12385:4994..5049Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12385 4995..5049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.2213392-CDS-S-dermatodea_contig12385:4598..49941622924246.2213392-CDS-S-dermatodea_contig12385:4598..4994Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12385 4599..4994 +
1694079121.9755523-CDS-S-dermatodea_contig12385:4598..49941694079121.9755523-CDS-S-dermatodea_contig12385:4598..4994Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12385 4599..4994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12385.1492.1

>prot_S-dermatodea_contig12385.1492.1 ID=prot_S-dermatodea_contig12385.1492.1|Name=mRNA_S-dermatodea_contig12385.1492.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=132bp
MVLVDLWFREESAHATDFDSSPPLPRLPSSPPVDPFTHTPLSPARGFVLP
VVEAIPTPQDLITPSVTHDTTRAVPSRPTHPAVFQPLWSLPKSPEATLCF
GRPGEPWLALSLPPLEVEAEGSLPAGIAIPP*
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mRNA from alignment at S-dermatodea_contig12385:4431..5049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12385.1492.1 ID=mRNA_S-dermatodea_contig12385.1492.1|Name=mRNA_S-dermatodea_contig12385.1492.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=619bp|location=Sequence derived from alignment at S-dermatodea_contig12385:4431..5049+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCTTCCCTGCTGCAGGTGACCCCGTCGCCTCGACTTCACCCCACCGGC
GGATAGAGTCTCGCCACCGCCCCCTCGCCGAATGGCTTCCATGCGCTGAA
CAGAGTCGTATTCCGTCATCGACACCCTTAGCCTCCCACTCCCACCATGC
TTGGCGCAGCCACTGTTGATGGTTCTGGTTGACCTTTGGTTTCGAGAAGA
GTCCGCCCACGCCACCGACTTTGATTCCTCACCTCCATTGCCTCGACTCC
CGAGCTCTCCCCCTGTGGACCCATTCACCCACACGCCATTATCGCCGGCG
AGAGGTTTTGTGCTACCAGTAGTGGAGGCAATCCCAACCCCGCAAGATCT
TATTACGCCTTCAGTCACACACGATACCACCCGCGCAGTACCGTCTCGCC
CGACGCACCCTGCTGTTTTCCAACCGCTTTGGTCACTCCCAAAATCTCCA
GAAGCAACCCTCTGCTTCGGCCGTCCGGGGGAGCCGTGGCTGGCATTATC
CCTTCCCCCGCTGGAGGTGGAAGCCGAAGGAAGCCTCCCCGCCGGCATCG
CTATCCCACCGTGAGGCCCACCACAGGTATTGGTTTTATACCCGCGTGTG
GTTGCCATGTGGCGCGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12385:4431..5049+

>mRNA_S-dermatodea_contig12385.1492.1 ID=mRNA_S-dermatodea_contig12385.1492.1|Name=mRNA_S-dermatodea_contig12385.1492.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at S-dermatodea_contig12385:4431..5049+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTCTGGTTGACCTTTGGTTTCGAGAAGAGTCCGCCCACGCCACCGA
CTTTGATTCCTCACCTCCATTGCCTCGACTCCCGAGCTCTCCCCCTGTGG
ACCCATTCACCCACACGCCATTATCGCCGGCGAGAGGTTTTGTGCTACCA
GTAGTGGAGGCAATCCCAACCCCGCAAGATCTTATTACGCCTTCAGTCAC
ACACGATACCACCCGCGCAGTACCGTCTCGCCCGACGCACCCTGCTGTTT
TCCAACCGCTTTGGTCACTCCCAAAATCTCCAGAAGCAACCCTCTGCTTC
GGCCGTCCGGGGGAGCCGTGGCTGGCATTATCCCTTCCCCCGCTGGAGGT
GGAAGCCGAAGGAAGCCTCCCCGCCGGCATCGCTATCCCACCGTGAATGG
TTCTGGTTGACCTTTGGTTTCGAGAAGAGTCCGCCCACGCCACCGACTTT
GATTCCTCACCTCCATTGCCTCGACTCCCGAGCTCTCCCCCTGTGGACCC
ATTCACCCACACGCCATTATCGCCGGCGAGAGGTTTTGTGCTACCAGTAG
TGGAGGCAATCCCAACCCCGCAAGATCTTATTACGCCTTCAGTCACACAC
GATACCACCCGCGCAGTACCGTCTCGCCCGACGCACCCTGCTGTTTTCCA
ACCGCTTTGGTCACTCCCAAAATCTCCAGAAGCAACCCTCTGCTTCGGCC
GTCCGGGGGAGCCGTGGCTGGCATTATCCCTTCCCCCGCTGGAGGTGGAA
GCCGAAGGAAGCCTCCCCGCCGGCATCGCTATCCCACCGTGA
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