mRNA_S-dermatodea_contig12384.1491.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12384.1491.1
Unique NamemRNA_S-dermatodea_contig12384.1491.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12384.1491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12384contigS-dermatodea_contig12384:1241..6463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size328
Cds size201
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12384.1491.1prot_S-dermatodea_contig12384.1491.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12384 1241..6336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.1503046-CDS-S-dermatodea_contig12384:1240..13471622924246.1503046-CDS-S-dermatodea_contig12384:1240..1347Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12384 1241..1347 +
1694079121.9389648-CDS-S-dermatodea_contig12384:1240..13471694079121.9389648-CDS-S-dermatodea_contig12384:1240..1347Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12384 1241..1347 +
1622924246.1613202-CDS-S-dermatodea_contig12384:6242..63361622924246.1613202-CDS-S-dermatodea_contig12384:6242..6336Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12384 6243..6336 +
1694079121.9478168-CDS-S-dermatodea_contig12384:6242..63361694079121.9478168-CDS-S-dermatodea_contig12384:6242..6336Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12384 6243..6336 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.1749775-UTR-S-dermatodea_contig12384:6336..64631622924246.1749775-UTR-S-dermatodea_contig12384:6336..6463Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12384 6337..6463 +
1694079121.9568539-UTR-S-dermatodea_contig12384:6336..64631694079121.9568539-UTR-S-dermatodea_contig12384:6336..6463Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12384 6337..6463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12384.1491.1

>prot_S-dermatodea_contig12384.1491.1 ID=prot_S-dermatodea_contig12384.1491.1|Name=mRNA_S-dermatodea_contig12384.1491.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
QISRWTSRYTRASFWTICCCWRPGLSRYFHRKGDERAFGSVDPSRNERAG
GGSQIRRQKDDRQASL*
back to top

mRNA from alignment at S-dermatodea_contig12384:1241..6463+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12384.1491.1 ID=mRNA_S-dermatodea_contig12384.1491.1|Name=mRNA_S-dermatodea_contig12384.1491.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5223bp|location=Sequence derived from alignment at S-dermatodea_contig12384:1241..6463+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATCAGCAGGTGGACGAGCCGCTACACGAGAGCTAGCTTCTGGACAAT
CTGTTGTTGTTGGCGGCCCGGGCTTTCGCGATATTTTCATCGCAAGGGAG
ACGAGAGGTATGTACCATGTGATAGTGCCATCAGCTTTTTGCCGCTCATT
TTATGGTGAGCGGTGGGGGGGGCGGGGGGGGGGGGGCTATGCCGTGCTGG
GCCGTGCTGTGCTGCTGAGCCTGCGATGAGATGGAGGAAGCGTCGTCTCT
GGTCTCATTTGGAGTGTTTCTCTCTACTGGTACTTGTGTATATGTGATGG
CTTGCTCTTGGTGTAATACTGAAGTATGCTGATCAAATCGCTATTGCGTC
TTGGTATTGGTCTTGCTGGCGTTAGTTGGCTGCATTTCACCTACAGCAGT
ATCATACCAGGTATGCTGCATTTGCCCTCTAGTCTACCAAAGCGCAGCTA
TATATATTCTCGCGCGCTGAAGCACATGCATGAGAGTGGCGGTCAGCAGC
ACAACAGCGATGCTCTCCTGAAGCCCAGATGTGTGTTTTTTAGTAATACT
GCTGTACAGCATCGTATTATTTCCTACAGCAGTTATGTGTTGTAGATGGG
CGCCCTCCTGTGCACACAGCAGTAATTATATGTACACTCCTGCTGTGAGT
ATGAGGCAAAGCAAGAGGCGGGGAGAATGAGAAGAGACGCTCGCGGACGA
AGTCCTGGATAGTGTAGTTTGCTGTGGCGCAAGTATATATTGTGTGTTGG
AAGCCTGTCTGGCATGTATGCTGCAGCAGTGGCACTTTCTCTGTGAACAA
CAATGCACTCACCTACAGCAGTACCACGTGCACATGCACTCACGTATTTT
GTATAACAGCAGGACAGCAGCATGTACGATCGCCGTGCATCTGTTCACAT
GTAGAGTCGTGTAAATACAAGCGTAGTCTTGTATTAATACTTGTAGTACG
TACATACTCCTGTTTGTTTGCGTGCAGCATATCATATATGAGCGAGAACA
CAAAGTTGCCGGCGAGCGATCCTTCGGGTGGCGCAAGCAGGAGGCATGCT
GCCAGTACAATCAGTCGAAAAACAATAGTGCATGGACAAGGCTATGTCAT
CCACAGCAGTGTGCATACCCACGGCGAGCGGCTGCTCTCCGTGTCCCCGC
TCCCCCCAAATTTCAAGTCGCGCCGGTTTCTACAGTATCGGAGAAACAGA
AAACACTCACCCTACAACAGCTGTAGGTTAGCAGTAGGGCCATATTTGTT
GTGTATTTGATTTTTGAATGCAGGCCATCGGCTTTGGAACTTCTTTCGAA
ACGCCCTCGGCACAGCCCGACCTCAGCGCCAAAGCGGCCAGCTGTCGAGA
CGCATGATGTTTGACGGAATAGTTGCTCGCCATCGGTTTTGTCAAGAACA
AAAACAAAGCACGGACAAGCGGCAAAAACAGCCACACCCCGGACGCCCCA
AAGAAACTTCCCCGCCGAAGCACTTTTCAGAAAGTCTAATTTGGTGTATG
CACGATACAACGCTACAGGGGTTAAGCCAACTTTTTCTTATCTGAAACCC
TGCAGCGTGTACAATAGTAGCCGAACGACTCCTTTTGCAGTATCCTTATT
AATTAATACAAGAGCCAACCATCTTTTATACCGATAAACTGAAGCCAGAT
TGATATGAAACTGTATGCCAAAAAAACTACAATCAGCTGAGGCCAGATGG
ATATACTAAATTCCACACGATTTCCATTTTCAAATACTCCTTTGTATTTT
GATTGCACAGCAGGAGGTAGCCACACTTGATTTTTGCGGTTGGCCCCCGC
CTCGCGATCCCCGCCCCGCTCGACCGCGGTCGGCCTCGGCCGCCTCGGCC
GTCGTCGGCCACGGTCGACCGCTCGCGCGCTCGCTCGAGCACCCGTCGCC
CCCGCGGGGCAGCAGCCAGCAACGCCGGCACGGACACATAGCATAGTTCT
CGAGACACAGCATAAACCACGCACCATGGAGTGCACACAAGCAGCAGCGA
GCTGCCAGACAGAACATCACGCAGCCATGCACACAGCCACCCGCCGCCGC
CGCCGCCGCCCGCGCCGGCCCGCACCCAGGTACGCGCTGCCTCTCCTCCT
CATATGCTAAGCAATTTATCTCATCTAGCAACCTCTGTCTCTCTCTCTGT
CTGTCCGGAGCAGCACCCACCGATAGGTTATGATTATTTTGGTGTATAAC
TTGAAACCTTTTTTGCGTTTATTTTCGTTAATTTATTTCCTACTTATGTC
ATCCTACTCCTTTGCCTCTCCCTCTGCTCGATGGAGACAGCCCACAAAAA
GCACACCACTGCCTACATACAGCAGCAGCAGCCAGCCCCTTCTCGCACGC
TCGGCTCCCTCCGTGGGTGATCGTCTGCCGTAGGTGGACGCCTGCCGTGG
GTACTACCGCCGCCGGCATATCGTTCTGCCAACGCACACACCTCACGGGC
GTAGCCGTGGCTACCTGCTAGTATGCATAAATGCACGTATACGATGTACA
GCTACATGTATGGCATCGCGGGTGGCATCGCACTATCCTCAACACATTGT
TGGCCTGCAAGGTTCGCTGCACAAGGTAGTGCTGCAGGCAGGAGCCGTTT
CGGCCTTCGCGCTTTTTGTCGGCGATATCATAAAACTGTTGTGTCGCCCG
TGCGCCTTGTCGTATGATACAAGTAATTACAAGAGGGAACCGCCGTTGGG
TCCCACTAGAACTTGCCATGTGTCCAGCGATCGAACGTGTGGGTTTTAGT
CCCCCTTCCAGCCAGGTCCATGCAGTATGTCCTGTGATCTCAGAAGCCTC
GGCCGAAGAGTCCTGTCTCTCCCCAAAGGGGTGAAACCAGCCACATCCTA
TTTGACACCTGCTGAGCAATGAAATTGTTGGAGAGCTCTAGAGCAACGAT
TGACTTACGATTGGTACTGCGCAGCCATGAGAACTCCTGAGCAAATGTTT
GTCTTGAGTGTAAGACAAATGGCACGGTCGTGTATGTTGTGTGCGTACGG
AACTTTTTGGTTCGCGCGGAGATCAAAGTCCCTTCGCGGTACGTAGGGGT
ATAGCCACGCCTACGGAATGGGCGCTATTTGGGTACCTGGTGTGTCCAAG
CAACCCATGGCATCTCCGGTTTGGCGTCGCAAACGCAAGCATGGTGATTA
AAACGCAGCTTGCACCATCTTGGTGAAATGCAGCCTGGCCGGCGAAACCC
AGCAAAAATCGTTTCGTCCTGGTATAGTTGTGATGAATGCGTGGTCTATA
TGTCCGTTTGGACACGACATGCGTAAAACATAAAGACACCCTTTCCCCCC
GCCCTTTCTCCTTTCGCCGCTGCTCCCGGGCGCTTTTGGTTGGTGTGTCC
TTGGGCGCTTTCGTGGAGCCGAACCAATGCGCCCGCCGGAAAAAAAAAGG
ATCGCTTCGATGTATGTAGTGGGTAGTCGCGGCTACGCCCGTGAGGTGTG
CGAAGGGCCGAACCGGCGAAATGTCCGAAAACGCATCAGACTTGTACTCT
GTAAGCCCTATTGATTTGGCATCAAGAGCTCCACTTTAAAGCCCTATCGA
TTTGGCTTCATACGTCAACTCTAACTCGCTGTTCGAAGAGGTTCAAAGCC
CTACTTGTTCATAAAGATGTGAATACTACATATACATATACGTGAATCGA
GAGAGGATCATCGCCTCGCGGTGGTCGGGGTGCGGTCCGCCGCAGGTCTA
GGAGCGAATTAGTCCCTGTGTAGAGCGGGGCGGGACCCGCTGTGTACATG
GTGTATTCGAACATTATCTGTATGGTACGGATTGTGTAGCTGTAGCTCTA
GTATTGGAGGTAGATAAGCAGGTGGCGTTCTCGACGGTGTATTCCTTGGG
ATACTGGCATCTGCCGCTTTTTAAATGTTTTCGGTGTCGTGCACAGGTCG
GTCGAGAGAGCAATCCAGTGCTATTTTGGCATATGCTCATACAGAGTACA
ATACCGTTGACGTGTGGGGTGCGTTTCAAATGCACAGCAGCAGTCACCCA
CTCGCCAATGACTCTCTCGCCTCCGCCCCCCACCCCTCCAAACAAGAAAA
TAGTTGTAAAACATAGAACGGGCTTTGGGGTCCTACTTTTTTGTAGAGAA
GAAACATAGCCCAAGCTAACTCAATGGGTGCCTACGATATGTGCGATGCT
ATAGGGACCTGCTGTACGACAGCTGCACTATAGGCTAAATTGAAGATGGC
TGCCGATTGGGTACGGTCAACGCCACCCCGCCCTCCGCCACCTACGTGCT
CGCGCGCAAGAGACGGGTGGAAAAGCACGACAGCAAAATGTACTCTCAAC
AGCCCGCGACAAACATGAACATTCCTCAAAATGGTGCCACAACAAAGCAG
TCGGTGGTGTGTCGTATTTTGTTCCTGCAATCGTTCTCGGATTTTTGTGC
ATGCATACACGGTGGTGTGATTTACGGTGTGATACATGAGACCAATGCAT
TCGCTCCGTCGTGTGCGAACTGTGCGAGAAGTGCGCTTTTTTTTCCGTCC
CGTGTACTTTGGCCGCACTCAACTCTCACTTGCCGCGCGCAGTTTTTAGT
TAGGGCTTTCCACATCATCATCTCCCGACGATTTACTCGTACACATGTAT
TTTTCGCATCACCCGCACCATAACCGGCTTGCCGTACGGTAGCGTACTGT
CAGACTTGTACGTGTACGTATGCCAACCGATTGGCGATTGGTCCTGTTGA
GAAATCCGGTCGGCGCTGGTAGGGTGCTACTGTGACACTGTTACGTGGGT
CAACCGGTTGGTGGTTGGTACTGTGACATTGTCGCCCGGTCCGGGTACAT
TATAGGGAACTGTCTAAAAACGCCCTGGTCACTGATTTTGGCGTTTCCAC
GCTTGTTGTGTTTTTTTTTCTTCCGTTCATCGAAGTGCTTCGAAGCACCC
CCCGTCCGCCCCCCGCCCCCCGCCCCCCACGCCTGTGGGAACCAACAATC
AAACCAACCAAATCGGACGCACGACTGACTTCCTTGCTTTACACGCGGGC
AGGGCTTTTGGTTCGGTTGACCCTTCTCGGAACGAAAGAGCCGGAGGAGG
AAGCCAAATTCGGCGGCAAAAAGACGACAGACAGGCTTCGCTCTAGTTCT
CGCTTCGACTTTTGAGCAAGAAGACCGAAGAACAAGAAGAAGACAAGATA
AATATATAATATATTAAGAATGGATCCGGCGGAGTTCCAGAGGCGCATCG
CCGAGGCCCAGGCCTTGAAAGAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12384:1241..6463+

>mRNA_S-dermatodea_contig12384.1491.1 ID=mRNA_S-dermatodea_contig12384.1491.1|Name=mRNA_S-dermatodea_contig12384.1491.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig12384:1241..6463+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATCAGCAGGTGGACGAGCCGCTACACGAGAGCTAGCTTCTGGACAAT
CTGTTGTTGTTGGCGGCCCGGGCTTTCGCGATATTTTCATCGCAAGGGAG
ACGAGAGCAGATCAGCAGGTGGACGAGCCGCTACACGAGAGCTAGCTTCT
GGACAATCTGTTGTTGTTGGCGGCCCGGGCTTTCGCGATATTTTCATCGC
AAGGGAGACGAGAGGGCTTTTGGTTCGGTTGACCCTTCTCGGAACGAAAG
AGCCGGAGGAGGAAGCCAAATTCGGCGGCAAAAAGACGACAGACAGGCTT
CGCTCTAGGGCTTTTGGTTCGGTTGACCCTTCTCGGAACGAAAGAGCCGG
AGGAGGAAGCCAAATTCGGCGGCAAAAAGACGACAGACAGGCTTCGCTCT
AG
back to top