mRNA_S-dermatodea_contig12366.1483.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12366.1483.1
Unique NamemRNA_S-dermatodea_contig12366.1483.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Match: A0A6H5JS11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JS11_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.580e-47
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 1
Query:    1 SALYRSAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLIRKDNA 261
            SALYRSAAR+KEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAK++RKD A
Sbjct:  322 SALYRSAARMKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKILRKDYA 408          
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Match: A0A7S1G4M3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4M3_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.840e-37
Identity = 69/80 (86.25%), Postives = 75/80 (93.75%), Query Frame = 1
Query:   16 SAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLIRKD 255
            +AARLK AG+PFVKEAAM+KLY SQVAERTASKCVEWLGGVGFTK F AEKFYRDCKIGAIYEGTSNIQL TIAKL++K+
Sbjct:  350 NAARLKMAGRPFVKEAAMAKLYASQVAERTASKCVEWLGGVGFTKDFPAEKFYRDCKIGAIYEGTSNIQLQTIAKLVQKE 429          
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Match: A0A2D4BKT0_PYTIN (Acyl-CoA dehydrogenase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKT0_PYTIN)

HSP 1 Score: 132 bits (332), Expect = 6.370e-36
Identity = 63/79 (79.75%), Postives = 75/79 (94.94%), Query Frame = 1
Query:   16 SAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLIRK 252
            +AARLK+AGQPFVKEAAM+KL+ S+VAERTASKC+EWLGG+GFTK  LAEKFYRD KIGAIYEGTSN+QLSTIAK++++
Sbjct:  231 NAARLKDAGQPFVKEAAMAKLHASRVAERTASKCIEWLGGIGFTKYLLAEKFYRDAKIGAIYEGTSNMQLSTIAKIVKE 309          
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Match: A0A4P9ZNJ6_9FUNG (Acyl-CoA dehydrogenase/oxidase n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZNJ6_9FUNG)

HSP 1 Score: 133 bits (335), Expect = 1.950e-35
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query:   16 SAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLIRKD 255
            +AARLKE G+PFVKEAAM+KLY SQVAERT S+CVEWLGGVGFT+ F AEKFYRDCKIGAIYEGTSNIQL TIAK + K+
Sbjct:  347 NAARLKEQGRPFVKEAAMAKLYASQVAERTTSRCVEWLGGVGFTREFPAEKFYRDCKIGAIYEGTSNIQLQTIAKFLTKE 426          
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Match: A0A098VVL7_9MICR (Acyl-CoA_dh_1 domain-containing protein n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VVL7_9MICR)

HSP 1 Score: 126 bits (317), Expect = 2.750e-35
Identity = 58/79 (73.42%), Postives = 71/79 (89.87%), Query Frame = 1
Query:   16 SAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLIRK 252
            +AARLKEAG+PF+KEAAM+KL++SQ+AER +SKC+EW+GG+G TK    EK+YRDCKIGAIYEGTSNIQL TIAK+I K
Sbjct:   80 NAARLKEAGEPFIKEAAMAKLFSSQIAERASSKCIEWMGGIGITKEIPVEKYYRDCKIGAIYEGTSNIQLQTIAKIISK 158          
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Match: A0A812ZQI9_9DINO (ACADSB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZQI9_9DINO)

HSP 1 Score: 129 bits (324), Expect = 1.350e-34
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   16 SAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLIRKDN 258
            +AARLKE GQPFVKEAAM+KLY S+VAERTAS C+EW+GGVGF K F  EKFYRDCKIGAIYEGTS IQL+TIAKL+R ++
Sbjct:  247 NAARLKETGQPFVKEAAMAKLYASRVAERTASHCIEWMGGVGFVKEFPQEKFYRDCKIGAIYEGTSLIQLTTIAKLLRAEH 327          
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Match: A0A1Y1WC20_9FUNG (Acyl-CoA dehydrogenase NM domain-like protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WC20_9FUNG)

HSP 1 Score: 130 bits (327), Expect = 2.170e-34
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1
Query:   16 SAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLIRKD 255
            +AARLKE G+PFVKEAAM+KLY SQVAER +SK VEWLGGVGFT+ F  EKFYRDCKIGAIYEGTSNIQL TIAK +RK+
Sbjct:  329 NAARLKEEGKPFVKEAAMAKLYASQVAERASSKAVEWLGGVGFTREFPVEKFYRDCKIGAIYEGTSNIQLQTIAKFLRKE 408          
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Match: A0A1R1XWS3_9FUNG (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XWS3_9FUNG)

HSP 1 Score: 129 bits (324), Expect = 7.130e-34
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    7 LYRSAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLIRKD 255
            L  +AARLKE G+PFVKEAAM+KLY+SQVAERT S+CVEWLGGVGFT+ F  EKFYRDCKIG+IYEGT+NIQL TIAK +  D
Sbjct:  339 LVYNAARLKEEGKPFVKEAAMAKLYSSQVAERTTSRCVEWLGGVGFTREFPVEKFYRDCKIGSIYEGTTNIQLQTIAKQVSAD 421          
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Match: A0A4P9YX25_9FUNG (Acyl-CoA dehydrogenase/oxidase (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YX25_9FUNG)

HSP 1 Score: 128 bits (322), Expect = 8.500e-34
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = 1
Query:   16 SAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLI 246
            +AARLKE G+PF+KEAAM+KLY SQVA++T S+CVEWLGGVGFT+ F  EKFYRDCKIGAIYEGTSNIQL TIAKL+
Sbjct:  309 NAARLKEEGKPFIKEAAMAKLYASQVADKTTSRCVEWLGGVGFTREFPVEKFYRDCKIGAIYEGTSNIQLQTIAKLL 385          
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Match: A0A2T9YTZ0_9FUNG (Uncharacterized protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YTZ0_9FUNG)

HSP 1 Score: 129 bits (323), Expect = 1.280e-33
Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 1
Query:   16 SAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLI 246
            +AARLKE G PF+ EAAM+KLY SQVAERT SKCVEWLGGVGFT+ F AEKFYRDCKIGAIYEGTSNIQL TIAK I
Sbjct:  359 NAARLKEEGMPFITEAAMAKLYASQVAERTTSKCVEWLGGVGFTRDFPAEKFYRDCKIGAIYEGTSNIQLQTIAKQI 435          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12366.1483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS11_9PHAE1.580e-4795.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1G4M3_9STRA1.840e-3786.25Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2D4BKT0_PYTIN6.370e-3679.75Acyl-CoA dehydrogenase, putative n=1 Tax=Pythium i... [more]
A0A4P9ZNJ6_9FUNG1.950e-3581.25Acyl-CoA dehydrogenase/oxidase n=1 Tax=Dimargaris ... [more]
A0A098VVL7_9MICR2.750e-3573.42Acyl-CoA_dh_1 domain-containing protein n=1 Tax=Mi... [more]
A0A812ZQI9_9DINO1.350e-3477.78ACADSB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A1Y1WC20_9FUNG2.170e-3480.00Acyl-CoA dehydrogenase NM domain-like protein n=1 ... [more]
A0A1R1XWS3_9FUNG7.130e-3475.90Short/branched chain specific acyl-CoA dehydrogena... [more]
A0A4P9YX25_9FUNG8.500e-3479.22Acyl-CoA dehydrogenase/oxidase (Fragment) n=1 Tax=... [more]
A0A2T9YTZ0_9FUNG1.280e-3383.12Uncharacterized protein n=1 Tax=Smittium simulii T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12366contigS-dermatodea_contig12366:2135..7157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue7.9e-39
Seed eggNOG ortholog2880.D7FWS9
Preferred nameACADSB
KEGG rclassRC00052,RC00068,RC00076,RC00148
KEGG koko:K09478,ko:K18402
KEGG ReactionR01175,R02661,R03172,R04751
KEGG Pathwayko00071,ko00280,ko01100,ko01110,ko01212,map00071,map00280,map01100,map01110,map01212
GOsGO:0002376,GO:0003674,GO:0003824,GO:0003995,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006520,GO:0006629,GO:0006631,GO:0006635,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009063,GO:0009081,GO:0009083,GO:0009117,GO:0009150,GO:0009259,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0016937,GO:0019395,GO:0019637,GO:0019693,GO:0019752,GO:0022900,GO:0030258,GO:0031974,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034440,GO:0034641,GO:0035383,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046395,GO:0046483,GO:0050829,GO:0050896,GO:0051186,GO:0051704,GO:0051707,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0072521,GO:0098542,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
EggNOG OGsCOG1960@1,KOG0139@2759
Ec32 ortholog descriptionacyl-CoA dehydrogenase
Ec32 orthologEc-16_004260.1
EC1.3.99.12
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size264
Cds size264
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12366.1483.1prot_S-dermatodea_contig12366.1483.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12366 2135..7157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924245.384694-CDS-S-dermatodea_contig12366:2134..21941622924245.384694-CDS-S-dermatodea_contig12366:2134..2194Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12366 2135..2194 -
1694079121.3262746-CDS-S-dermatodea_contig12366:2134..21941694079121.3262746-CDS-S-dermatodea_contig12366:2134..2194Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12366 2135..2194 -
1622924245.3950496-CDS-S-dermatodea_contig12366:4520..45831622924245.3950496-CDS-S-dermatodea_contig12366:4520..4583Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12366 4521..4583 -
1694079121.3410196-CDS-S-dermatodea_contig12366:4520..45831694079121.3410196-CDS-S-dermatodea_contig12366:4520..4583Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12366 4521..4583 -
1622924245.403592-CDS-S-dermatodea_contig12366:5745..57961622924245.403592-CDS-S-dermatodea_contig12366:5745..5796Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12366 5746..5796 -
1694079121.348838-CDS-S-dermatodea_contig12366:5745..57961694079121.348838-CDS-S-dermatodea_contig12366:5745..5796Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12366 5746..5796 -
1622924245.4169946-CDS-S-dermatodea_contig12366:7067..71571622924245.4169946-CDS-S-dermatodea_contig12366:7067..7157Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12366 7068..7157 -
1694079121.3571305-CDS-S-dermatodea_contig12366:7067..71571694079121.3571305-CDS-S-dermatodea_contig12366:7067..7157Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12366 7068..7157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12366.1483.1

>prot_S-dermatodea_contig12366.1483.1 ID=prot_S-dermatodea_contig12366.1483.1|Name=mRNA_S-dermatodea_contig12366.1483.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
SALYRSAARLKEAGQPFVKEAAMSKLYTSQVAERTASKCVEWLGGVGFTK
AFLAEKFYRDCKIGAIYEGTSNIQLSTIAKLIRKDNA*
back to top

mRNA from alignment at S-dermatodea_contig12366:2135..7157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12366.1483.1 ID=mRNA_S-dermatodea_contig12366.1483.1|Name=mRNA_S-dermatodea_contig12366.1483.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5023bp|location=Sequence derived from alignment at S-dermatodea_contig12366:2135..7157- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTGCGTTATACCGGTCCGCTGCGAGGCTTAAGGAAGCAGGCCAGCCGTT TGTGAAGGAAGCCGCCATGTCCAAGCTCTACACGTCGCAGGTAGGGGAGA AGACCTTACTAAAATCGGCCGCCGCAAGTCTGCTCTGTTGTGTTTCCTTT CGCGCGTCTGGTCCGGCGTTGCTGCCACTCGATGGGCAATAAATCGAGGA ATGGGCTCTCTGTACTCCGGCTGCTGTTGCTGGCGGACGACAATCGTGGG GGCATCAGCCCTTTTGGGGCTGAGCTCCCCCCCCCCCCCCCTAAGATCAT CATTATTAAGGTGGACCATAGTTAACAAAACCAAATATTTAGTTTGTTAA CAAACCACCAGCCCCGCGAGCATGTTATTCCTTGTTTTTCTTCCTCTAGA AAACAGGAATTAATGTTTGTCGGGAGGTTGTAGATGGTGTATGTACTGTA AGGCCAGAATGTCATTTTCAGATTGATTGATTGACTGATTTGACTGATTA TCACGCTTACAACCGACCGGTCCACCATAATAGTATAATGGTGATGGTTG CCGATCCCGCTCGTGGCCAGATGAGAAAACGAGATATCGAAAAACAAAAC CTACGGAATCGCCCGTAAGTACATACCTGGTATGATACAAAGAAGGAATT GACACAAGCTCTCGGAAACTGAGGGGGGGATACCTCGAAACTTGGGCCTG CTAAAAAGAAAAGAAAAAAAGAACGGTCCCCTCTCCTATCGTAGAAGCCG GTGTTTTATTTTGAGGGAGACTTGTCATGGATTTGGTTCTACTATAATAT TATAACTGTCTGTGTTCGTCCGCTAATGCAGGTTTCGGTGTTTGCCCTCA CGGCTATCATACAGGCACGAGTGCACCGTGCCCGCGACCTGAGCGTGTCC GGGTTATCTACCACCGCTTTTCCATCGCCACGCTACGGCGAACAGCAGTC GCGGATTGGAATTTAATGGCTGTTTGTTCTGATTAGTTATTTTCTCATTG ACTCTTTGCGCATGTGACCACGAGTCAGGTCGGATTAAGCCGATGTGATC TACGTGTGCAAATCAAAATCAATGAATTAATCAACGACTCAAAACCAAAT CAACGTGGAACACGGTGCGGGCAAATAGATGCCCGCGGAAAAAAGACCTC AGCCCCAAAAGAGTGAAGCGAGAGAAATACCAATTTTTCGCGCGGCGCCC CGGTGCTGCTGTCGCTTACCGTCCTTACCGCCGCTGCAGCGTTATGTTTA CGGCGACTGCGTTCATGCGCGCACGTACGTCATTCCGACTTAACGTCCGG GCGTTCGAGCAGTCAGTCCCTCGTGCTTGTTATATGGTTTTCCCCTTCCT CTCTTGTACAGGTGGCCGAGCGGACCGCTTCGAAATGTGTCGAGTGGCTC GGGGGCGTTGGGGTGAGTGACAAGGCAATCCATATTTCGGGTGGTTCGAC CGGATTATCGAGCCGTGTAAGTTGTCGAGCGATCGGTGACGCTGCTCTCA CCACTTTCGATCTCCAGCCGCACAGAGTGGCGCTTACGCCTGCTTTAGAT GGAGCCCGATGTGTCTCCGGGAAGCTCTGCAGCGATTGAGGTCATATCTT TCGCCGATTCAGTACCGCGTGTGTGAATGAAGCCAGCTTGCTACGTGCGG GCGAGTAGAGCTACATTCTACTGAAAAGCACACAGTAGTGATTTCTTGGC CACCGCGACATAACGTTCTCTGGCGACACGTAGTGCTGTGGTCCGGTTGT CGACGACACGGCTGCTACTTGACCCTCGTATCGACCATTTACATTGCGAC GCTAATACGTAGGTACACAGTACCGGCCCGCTCATAAGAAACGAGCTTGT TAGAAAATCAGGCTGCGATTTTTGAAAACAGTAAGAAAGGTGGAGCTTCA GCGCCAAGTGTTACACCAAACCCTATATAATAGTGTTCGCCCCCTATAAG AAACTCAGGCTGAGCCCGATTATCAGTTTCTTATGAGCGGGCCGGTACTG TAGTATAATAGTAGAATAATAGTTGTATCGAACATTTACATTGCGACACT AATTCGTAGGTACACAGTAATCAGGACCAACGTTTGCCTATTACTAGTAG CGTATTAAAGTTGTATTGTTTTTAAACGTTGGCCCAACACCATGTAAGAA AAAGGAAGGTTGTTTTGATGGATATTTCAGACCGGAAGATTGCAGATGTT GTAACACCAGACCAGATGGATTTATGGTACTGTTATGTTGGGCGTAATGC TGTCGGGCACGTTTAGATCTGATTACTGTGTTACCTCCGTCATAGCATAT TAGGGCCTGCGCTTCGCATTTCCTCGGCCACAGGAAATTACTCAATGGGA GCGAATGTCAATATTTTCCCGCAAGGATAGTCCTAGCACCGCCTCCGGTC GTGTTGTTCACCGAGCGACGATGAAAGTTGTGCATGCGCATTCGCTATCG AACGAACCGACGAGGCAGTCCCCAATCCTTGCTCGAACCACGCCCTCTTT TTTCTTTTCTTTCTGTGGATTCCAAACCTGCCGCCACAAAACCGCTATAT TTTGTCTCTGCGGATGCATTTCAGTTCACGAAGGCCTTTTTGGCGGAAAA GTTCTACCGGGATTGCAAGATCGGAGCTATATACGAGGTGAGCTAACCGT AAGCAAAGCCTACGCGGCCAGCCAGACACAACCCCCTTTCGAGTAGCGGG CCTAAGAAACACAAAATGTGTCGAGCGTGGAGCGATTCCTGGGAATTGTC CTTGTTTGGTGCGACGGGGGCCGGGTGCCGACTAACACGGAAGATCGTAT TAATAGTAGGATATGACGATGCCATCCTCAAAGAGTTTTCTATAAAACTA TTTATTCATATTCATGTGCAGCAGCACACACTTGAACACGGTAAGGGAGC TAGCAGCTATTTTTCTTATTCAGCGAAATGTGCAAGATCGGCGGTCTGCC AGGATGGGGGAAACCCCGGGTCGTGTGTATACAACCGTCCAAAGCTTCCC GTACACGATTCTTGGCTTTTCGAGTTGATCATCCACAAAGAGTGAGTACA ACTGCAGTAGTCACGCGGCTATCAGGCACTTGGGTAATGGTGCCCAGCTC ATGGTTTTTCCGTTAAAGGTTTACTATAATAGTCTCCATCGTCAGACGAG ATGGAAAGTCAGCGGTGGCGTGAGTTACGCAGTCTGATTCGGCCACCCAA GCTGTGCGCACAAACGTACCGTGGTGACATCCTGTAGAAAGTAACTAACC GCAGGATCGAGCACAACCTAACACAGCCCCGAGATGTCACCTTACGCAGT TCGCTGGTAACACACAGTATAGAAGCGGTGCGCAAGCCCCCGGCCTAGAC ACACTCTGCGGAGTAGCCCCCCCGCCCGCCCCCCCAACCCTGGATTGCAT ATTTCGGATATTACATTGCGCCTGTTCGCGCGGAGCATCCGAGGCGTTTG ATTGGAGTATACTCGATATGTGAAGGAGGTGCTCCATTCTTGGACCCACG TTTTGTACTCCAGATTTCCAATGGCGGATGGTTTGTCTTTGTGCGTATGG ACGTGCTTTGCGCTGGGTGGGCGCAAATAGTTTTGGTACTAGGCACGGGT AGCGGCCGCTTTGCGCGATGATGGTGCCTTGCAACCCATGGGACCACTTG ACCGGCGATCAATTGTCTGCTGTACGCGATGTATTCTTGCTTGTGTGCTT TTTGCGCATCTTACGGAGGTACACACAGTAAATAGGACCAAATATCCCAA AGAGTACACCCAACATAACAAACCAGATATGACTATGGTCGTGGCTTACA ACATGTGCAATTTTCGGCCTGAAATGTCCATAAAAAGCATTAACATTAAT GACAAGATGTTCGGGGCAACGTTTAAAAACAAGACTCGCGTACGCCATCG AGCAGAAACTTGCTCCCGATTACCGTGTACCTCCGTAAAAGCCTTACGTA TTGTCAGCAGTTCTTGGCCCTGTCGTGGTGGATGTATCTTTTGACATCTG ATGGTGATGGCTGCTGCTTTGTTCCTGTATCCTATGGCGGTGCGTTCAGC ACTTCAGACAGTAAGTTTCTGTAGCTTGGCACTACTGTTCCTACTTATTG TATGCCATTGTAGATTGATGACAGGCAGCACGTCGGACAAAAATCCTGTA CAATACTACTACAGTGTCTGTAGCTCGTACTTGTATCATAGCACATTTTT ATGGTAGTTTTCCTGTAAATCAAGGGGCCAGGCGGTCCGGGCGGCGTGTG GGTTATATGTGGACATCACGTATTTTGTTCGGCGCAGGGGTGTTGGATTC CACTTGCTCTTTGCCTCCATGCGACCACGAGCGGGATCGGTATCCACTTT TGCAATTGCAAAAATGGCGGGCCGGTCGGTTGTATGTGTGACAATCAATC AATCAAATCACTCAATCAATGTAGAGTCGGCCAAGATCGTACGGCAAATC GGATGGACAAAGAGTGTACTGGATGGTGTATTTACGAGAAGGAACCCCTG TGTCAGGTGCATACACCCTTTACTCTGCCCTTCTTGAGATATTTCCGGTG TTTACTATTTCCTCTTCTGTGTACTATAGGTTATACCAGGGTTGTATTGA CCCCGTCTCAAATACATACACTTATTTATTTACTCTACTATTCTTACGAC GTTTCTGGTGTTTACTACAGTATTTCCTCTTCCTTTTACTATAGGTTGTA CCAGGGTCGGTAGTGCTGTATATCATGCAGAAGGAGGTGTATGATTTAGT TTTTTCTTCTCACCCTTGACTCTTACTCTTTGCGCATCTGACCACAAGCC GAATCGAATGAAGCCGATCGGCTACACGTGTGCGTATCGATCAACCACAA TCAATGTATATATCAGTGACGTTCTCTTTCCTCACGACCTACCCCGATTG GCTACTGTATTGACCCTCTGTCTGTAATCCTCGCGTGCGTCGTCGTCTCG ATTCTTCCAACAGGGGACGTCCAATATCCAGCTGTCGACCATCGCGAAAC TCATTCGAAAGGACAACGCTTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12366:2135..7157-

>mRNA_S-dermatodea_contig12366.1483.1 ID=mRNA_S-dermatodea_contig12366.1483.1|Name=mRNA_S-dermatodea_contig12366.1483.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig12366:2135..7157- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTGCGTTATACCGGTCCGCTGCGAGGCTTAAGGAAGCAGGCCAGCCGTT
TGTGAAGGAAGCCGCCATGTCCAAGCTCTACACGTCGCAGAGTGCGTTAT
ACCGGTCCGCTGCGAGGCTTAAGGAAGCAGGCCAGCCGTTTGTGAAGGAA
GCCGCCATGTCCAAGCTCTACACGTCGCAGGTGGCCGAGCGGACCGCTTC
GAAATGTGTCGAGTGGCTCGGGGGCGTTGGGGTGGCCGAGCGGACCGCTT
CGAAATGTGTCGAGTGGCTCGGGGGCGTTGGGTTCACGAAGGCCTTTTTG
GCGGAAAAGTTCTACCGGGATTGCAAGATCGGAGCTATATACGAGTTCAC
GAAGGCCTTTTTGGCGGAAAAGTTCTACCGGGATTGCAAGATCGGAGCTA
TATACGAGGGGACGTCCAATATCCAGCTGTCGACCATCGCGAAACTCATT
CGAAAGGACAACGCTTGAGGGACGTCCAATATCCAGCTGTCGACCATCGC
GAAACTCATTCGAAAGGACAACGCTTGA
back to top