mRNA_S-dermatodea_contig12365.1482.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12365.1482.1
Unique NamemRNA_S-dermatodea_contig12365.1482.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12365.1482.1 vs. uniprot
Match: A0A6H5L378_9PHAE (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L378_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.700e-13
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  256 TRVNAKDSLLEMRIDYGPHGTGDLTDEVNMSGFVSTVLASTGGVRLDLVVADGGLG 423
            T   A  +LLEM IDYGP+GTGDLTD  N+ GFV  ++ASTGG  LDLVVADGG G
Sbjct:  449 TTTAAGPALLEMNIDYGPNGTGDLTDVANIQGFVEAIVASTGGQYLDLVVADGGFG 504
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BLAST of mRNA_S-dermatodea_contig12365.1482.1 vs. uniprot
Match: D8LL77_ECTSI (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL77_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 5.200e-11
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  283 LEMRIDYGPHGTGDLTDEVNMSGFVSTVLASTGGVRLDLVVADGGLG 423
            LEM IDYGP+GTGDLTDE N+ GFV  +  STG   LDLVVADGG G
Sbjct:  408 LEMHIDYGPNGTGDLTDEANIQGFVEAIRTSTGEKYLDLVVADGGFG 454
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12365.1482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L378_9PHAE3.700e-1366.07Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
D8LL77_ECTSI5.200e-1170.21Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12365contigS-dermatodea_contig12365:4727..5149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog2880.D8LL77
KEGG rclassRC00003,RC00466
KEGG koko:K14589,ko:K18081
KEGG ReactionR03922
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
EggNOG free text desc.cap1 mRNA methylation
EggNOG OGsKOG3673@1,KOG3673@2759
EC2.1.1.57,3.1.3.64,3.1.3.95
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-24_002650.1
Exons1
Model size425
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924245.349745-CDS-S-dermatodea_contig12365:4726..51491622924245.349745-CDS-S-dermatodea_contig12365:4726..5149Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12365 4727..5149 +
1694079121.3136585-CDS-S-dermatodea_contig12365:4726..51491694079121.3136585-CDS-S-dermatodea_contig12365:4726..5149Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12365 4727..5149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12365.1482.1prot_S-dermatodea_contig12365.1482.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12365 4727..5149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12365.1482.1

>prot_S-dermatodea_contig12365.1482.1 ID=prot_S-dermatodea_contig12365.1482.1|Name=mRNA_S-dermatodea_contig12365.1482.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=141bp
NGRLPDAPVGAKLGVGTSTGRDARKGEKGVTVSGQKAGAVIGPPAELPGV
CLSGIGTGGSIDETSTTGNSRVPSQATAAPTAVPSTRVNAKDSLLEMRID
YGPHGTGDLTDEVNMSGFVSTVLASTGGVRLDLVVADGGLG
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mRNA from alignment at S-dermatodea_contig12365:4727..5149+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12365.1482.1 ID=mRNA_S-dermatodea_contig12365.1482.1|Name=mRNA_S-dermatodea_contig12365.1482.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at S-dermatodea_contig12365:4727..5149+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACGGTCGCTTGCCCGATGCTCCGGTGGGGGCAAAGTTAGGCGTGGGCAC
CAGCACCGGGAGAGACGCTAGAAAGGGCGAGAAAGGAGTCACAGTGAGTG
GACAGAAGGCTGGTGCGGTGATTGGGCCCCCTGCGGAGCTTCCTGGTGTA
TGTCTCTCTGGGATCGGTACGGGGGGGAGCATCGACGAAACCAGCACTAC
GGGAAACTCAAGAGTACCTTCTCAGGCCACAGCTGCTCCCACCGCTGTGC
CCTCGACCAGGGTAAACGCGAAGGACTCTTTGCTGGAGATGCGGATAGAC
TACGGCCCTCACGGAACGGGAGACCTTACGGACGAGGTTAACATGAGCGG
GTTTGTAAGCACCGTTCTGGCTTCAACGGGGGGGGTTCGTTTGGATCTGG
TGGTGGCAGACGGGGGGTTGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12365:4727..5149+

>mRNA_S-dermatodea_contig12365.1482.1 ID=mRNA_S-dermatodea_contig12365.1482.1|Name=mRNA_S-dermatodea_contig12365.1482.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at S-dermatodea_contig12365:4727..5149+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACGGTCGCTTGCCCGATGCTCCGGTGGGGGCAAAGTTAGGCGTGGGCAC
CAGCACCGGGAGAGACGCTAGAAAGGGCGAGAAAGGAGTCACAGTGAGTG
GACAGAAGGCTGGTGCGGTGATTGGGCCCCCTGCGGAGCTTCCTGGTGTA
TGTCTCTCTGGGATCGGTACGGGGGGGAGCATCGACGAAACCAGCACTAC
GGGAAACTCAAGAGTACCTTCTCAGGCCACAGCTGCTCCCACCGCTGTGC
CCTCGACCAGGGTAAACGCGAAGGACTCTTTGCTGGAGATGCGGATAGAC
TACGGCCCTCACGGAACGGGAGACCTTACGGACGAGGTTAACATGAGCGG
GTTTGTAAGCACCGTTCTGGCTTCAACGGGGGGGGTTCGTTTGGATCTGG
TGGTGGCAGACGGGGGGTTGGGCAACGGTCGCTTGCCCGATGCTCCGGTG
GGGGCAAAGTTAGGCGTGGGCACCAGCACCGGGAGAGACGCTAGAAAGGG
CGAGAAAGGAGTCACAGTGAGTGGACAGAAGGCTGGTGCGGTGATTGGGC
CCCCTGCGGAGCTTCCTGGTGTATGTCTCTCTGGGATCGGTACGGGGGGG
AGCATCGACGAAACCAGCACTACGGGAAACTCAAGAGTACCTTCTCAGGC
CACAGCTGCTCCCACCGCTGTGCCCTCGACCAGGGTAAACGCGAAGGACT
CTTTGCTGGAGATGCGGATAGACTACGGCCCTCACGGAACGGGAGACCTT
ACGGACGAGGTTAACATGAGCGGGTTTGTAAGCACCGTTCTGGCTTCAAC
GGGGGGGGTTCGTTTGGATCTGGTGGTGGCAGACGGGGGGTTGGGC
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