mRNA_S-dermatodea_contig1236.1480.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI) HSP 1 Score: 226 bits (575), Expect = 9.090e-66 Identity = 109/155 (70.32%), Postives = 122/155 (78.71%), Query Frame = 1
Query: 1 VSGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRP------PRDDMYYNARTGEGKWK 447
VSGEIRWRRPQD LELLPRPSCGDC LFEAFSECADC EFFCS+CYRK VH GGKR+HHEFRALYDYYGKRVDYGEGEFPSCWPTD+ Q D+ENGWQLRV+P+RE +EER DW RY ++ G P +D+YYNA TGE ++
Sbjct: 919 VSGEIRWRRPQDFLELLPRPSCGDCCLFEAFSECADCGEFFCSACYRK----VHGGGKRLHHEFRALYDYYGKRVDYGEGEFPSCWPTDVLQ------DDENGWQLRVAPEREPAEERGDWTRYTAEAGGDSADGSAYPGEDLYYNAVTGESSYQ 1063
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A7S1G3C0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G3C0_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.790e-39 Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 1
Query: 1 VSGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGW 312
V+GE RWR PQD L+LLP P C +C +EA +EC +C EFFC+ C+ VHSGGKR HH FRALYDYYG+RVD+G+GEFPSCWP+DI Q DE GW
Sbjct: 34 VTGESRWRTPQDFLDLLPHPICDNCEYYEAQTECKECGEFFCNKCWSD----VHSGGKRKHHAFRALYDYYGRRVDHGDGEFPSCWPSDILQ------DEHVGW 127
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A835ZCL3_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL3_9STRA) HSP 1 Score: 150 bits (378), Expect = 4.050e-39 Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = 1
Query: 1 VSGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREAS 345
++GE+RWRRPQDLLEL+PRP+C +C FEA++ECA C E+FC+ C+ K VH GGKR HH+FRALY+YYGKRVDYG+G+FPS WP+DI Q D+ GW R + EA+
Sbjct: 1313 ITGEVRWRRPQDLLELMPRPACSNCEAFEAYTECASCGEYFCTGCWDK----VHGGGKRRHHQFRALYEYYGKRVDYGDGDFPSMWPSDIEQ------DDMAGWHRRTATAAEAA 1417
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A7R9Y828_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y828_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.390e-38 Identity = 75/149 (50.34%), Postives = 96/149 (64.43%), Query Frame = 1
Query: 1 VSGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRV-SPDREASEERQDWARYAGDSDGRPPRDDMYYNARTGEGKW 444
VSGE+RWR+PQ LL+L+P+P C +CG A +EC DC E FC C++ VHSGG+R HHEFRALYDYY +RVDYG+GEFPS WP+++A DE GW+LR+ + +RE W Y D GRP YYN T +G +
Sbjct: 1089 VSGEVRWRKPQALLDLMPKPFCDNCGAVLATTECKDCCEAFCDECWQA----VHSGGRRAHHEFRALYDYYERRVDYGDGEFPSLWPSEVAM------DELAGWKLRIHAGEREPMRSDGAWDVYYDDDSGRP----FYYNRETRDGSY 1223
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A024UNS2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNS2_9STRA) HSP 1 Score: 146 bits (369), Expect = 6.510e-38 Identity = 71/127 (55.91%), Postives = 86/127 (67.72%), Query Frame = 1
Query: 4 SGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDS 384
+GEIR R PQDLL+LLP+P C DC + A +EC DC EFFCS C+ +H+GG+R H FR LYDYYGKR+DYG+GEFPS WP++IAQ DE +GW LR SP RE DW +Y DS
Sbjct: 1017 TGEIRQRMPQDLLDLLPKPRCNDCDVEAAMTECGDCGEFFCSECWHA----IHAGGRRRRHRFRTLYDYYGKRIDYGDGEFPSVWPSEIAQ------DELDGWYLRTSPFREPVLVLGDWEKYVDDS 1133
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A7S3JR88_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR88_9STRA) HSP 1 Score: 143 bits (360), Expect = 3.800e-37 Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 1
Query: 1 VSGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRPPRDDMYYNARTGEGKWK 447
V+GEIRWRRPQ+LLEL+ RP C +CG FEA+ ECA C+EFFC+ C+ +H GGKR H FR+LYD YGKRVDYG+G+F S WPT+I Q D+ G LRV+P RE E W RY + +G P YYN +GEG ++
Sbjct: 385 VTGEIRWRRPQELLELMKRPICDNCGYFEAWLECATCSEFFCADCWNS----IHYGGKRAAHPFRSLYDAYGKRVDYGDGDFDSRWPTEILQ------DDLAGVLLRVAPYREPIEICGAWHRY--EENGIP----YYYNPISGEGSYE 517
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: W4GZ43_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZ43_9STRA) HSP 1 Score: 144 bits (362), Expect = 5.710e-37 Identity = 73/142 (51.41%), Postives = 92/142 (64.79%), Query Frame = 1
Query: 4 SGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRPPRDDMYYNART 429
+GEIR R PQDLL+LLP+P C DC + A EC DC EFFC+ C+ +H+GG+R H FR L+DYYGKR+DYG+GEFPS WP++IAQ DE +GW LR SP RE S DW +Y D+ R + Y+N T
Sbjct: 1022 TGEIRHRMPQDLLDLLPKPRCNDCDVEVAMVECGDCGEFFCNDCWHA----IHAGGRRRKHCFRTLFDYYGKRIDYGDGEFPSVWPSEIAQ------DELDGWYLRTSPFREPSLVLGDWEKYVDDTSHR----EWYFNPTT 1149
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A485K8X4_9STRA (Aste57867_848 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8X4_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.690e-36 Identity = 73/142 (51.41%), Postives = 92/142 (64.79%), Query Frame = 1
Query: 4 SGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRPPRDDMYYNART 429
+GEIR R PQDLL+LLPRP C DC + +A EC DC EFFC C+ +H+GG+R H FRALYD+YGKR+DYG+GEFPS WP++I Q DE +GW LRVSP RE +W +Y D R + Y+N +T
Sbjct: 1064 TGEIRNRIPQDLLDLLPRPRCNDCDVKDAAVECGDCTEFFCKDCWHA----IHAGGRRRVHRFRALYDFYGKRIDYGDGEFPSVWPSEIEQ------DELDGWFLRVSPFREPCLVLGNWEKYVDDKSHR----EWYFNPKT 1191
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A1V9YA87_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA87_9STRA) HSP 1 Score: 141 bits (356), Expect = 3.630e-36 Identity = 74/142 (52.11%), Postives = 91/142 (64.08%), Query Frame = 1
Query: 4 SGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRPPRDDMYYNART 429
+GEIR+R PQDLL+LLPRP C DC +A EC DC E FC C+ +H+GGKR H FRALYDYY KRVDYG+GEFPS WPT++ Q DE +GW+LR S R+ + DW +Y D D R + YYN +T
Sbjct: 906 TGEIRYRMPQDLLDLLPRPGCNDCDEADAAVECKDCEEVFCKECWDA----IHAGGKRRRHAFRALYDYYDKRVDYGDGEFPSLWPTEVEQ------DELDGWRLRTSDTRDPAVVVGDWEKYI-DPDARR---EWYYNCKT 1033
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A2D4CFY5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFY5_PYTIN) HSP 1 Score: 137 bits (346), Expect = 7.060e-36 Identity = 73/150 (48.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query: 4 SGEIRWRRPQDLLELLPRPSCGDC---GLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRPPRDDMYYNARTGEGKW 444
+GE+R+RRPQD+L+LLP+P C +C A EC DC E FC C+R VH+GG+R H FRALYD+YG+RVDYG+GEFPS WP+++ Q D+ +GW LR P RE +E R WARY + GR + +YN TGE +
Sbjct: 103 TGEVRFRRPQDVLDLLPQPHCDNCLPSTETVARVECRDCGEMFCDPCWRS----VHAGGRRRGHAFRALYDFYGRRVDYGDGEFPSRWPSEMQQ------DDMDGWFLRAYPHREPTETRGAWARYVDAASGR----EWFYNRDTGENSY 238 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1236.1480.1 >prot_S-dermatodea_contig1236.1480.1 ID=prot_S-dermatodea_contig1236.1480.1|Name=mRNA_S-dermatodea_contig1236.1480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp MRGLRPVRGVQRVCRLRRVLLLLVLPKGESLRAQRRKTHPPRVSRPVRLLback to top mRNA from alignment at S-dermatodea_contig1236:14002..15226+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1236.1480.1 ID=mRNA_S-dermatodea_contig1236.1480.1|Name=mRNA_S-dermatodea_contig1236.1480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1225bp|location=Sequence derived from alignment at S-dermatodea_contig1236:14002..15226+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1236:14002..15226+ >mRNA_S-dermatodea_contig1236.1480.1 ID=mRNA_S-dermatodea_contig1236.1480.1|Name=mRNA_S-dermatodea_contig1236.1480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig1236:14002..15226+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |