mRNA_S-dermatodea_contig1236.1480.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1236.1480.1
Unique NamemRNA_S-dermatodea_contig1236.1480.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 9.090e-66
Identity = 109/155 (70.32%), Postives = 122/155 (78.71%), Query Frame = 1
Query:    1 VSGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRP------PRDDMYYNARTGEGKWK 447
            VSGEIRWRRPQD LELLPRPSCGDC LFEAFSECADC EFFCS+CYRK    VH GGKR+HHEFRALYDYYGKRVDYGEGEFPSCWPTD+ Q      D+ENGWQLRV+P+RE +EER DW RY  ++ G        P +D+YYNA TGE  ++
Sbjct:  919 VSGEIRWRRPQDFLELLPRPSCGDCCLFEAFSECADCGEFFCSACYRK----VHGGGKRLHHEFRALYDYYGKRVDYGEGEFPSCWPTDVLQ------DDENGWQLRVAPEREPAEERGDWTRYTAEAGGDSADGSAYPGEDLYYNAVTGESSYQ 1063          
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A7S1G3C0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G3C0_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.790e-39
Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 VSGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGW 312
            V+GE RWR PQD L+LLP P C +C  +EA +EC +C EFFC+ C+      VHSGGKR HH FRALYDYYG+RVD+G+GEFPSCWP+DI Q      DE  GW
Sbjct:   34 VTGESRWRTPQDFLDLLPHPICDNCEYYEAQTECKECGEFFCNKCWSD----VHSGGKRKHHAFRALYDYYGRRVDHGDGEFPSCWPSDILQ------DEHVGW 127          
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A835ZCL3_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL3_9STRA)

HSP 1 Score: 150 bits (378), Expect = 4.050e-39
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 VSGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREAS 345
            ++GE+RWRRPQDLLEL+PRP+C +C  FEA++ECA C E+FC+ C+ K    VH GGKR HH+FRALY+YYGKRVDYG+G+FPS WP+DI Q      D+  GW  R +   EA+
Sbjct: 1313 ITGEVRWRRPQDLLELMPRPACSNCEAFEAYTECASCGEYFCTGCWDK----VHGGGKRRHHQFRALYEYYGKRVDYGDGDFPSMWPSDIEQ------DDMAGWHRRTATAAEAA 1417          
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A7R9Y828_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y828_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.390e-38
Identity = 75/149 (50.34%), Postives = 96/149 (64.43%), Query Frame = 1
Query:    1 VSGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRV-SPDREASEERQDWARYAGDSDGRPPRDDMYYNARTGEGKW 444
            VSGE+RWR+PQ LL+L+P+P C +CG   A +EC DC E FC  C++     VHSGG+R HHEFRALYDYY +RVDYG+GEFPS WP+++A       DE  GW+LR+ + +RE       W  Y  D  GRP     YYN  T +G +
Sbjct: 1089 VSGEVRWRKPQALLDLMPKPFCDNCGAVLATTECKDCCEAFCDECWQA----VHSGGRRAHHEFRALYDYYERRVDYGDGEFPSLWPSEVAM------DELAGWKLRIHAGEREPMRSDGAWDVYYDDDSGRP----FYYNRETRDGSY 1223          
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A024UNS2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNS2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.510e-38
Identity = 71/127 (55.91%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    4 SGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDS 384
            +GEIR R PQDLL+LLP+P C DC +  A +EC DC EFFCS C+      +H+GG+R  H FR LYDYYGKR+DYG+GEFPS WP++IAQ      DE +GW LR SP RE      DW +Y  DS
Sbjct: 1017 TGEIRQRMPQDLLDLLPKPRCNDCDVEAAMTECGDCGEFFCSECWHA----IHAGGRRRRHRFRTLYDYYGKRIDYGDGEFPSVWPSEIAQ------DELDGWYLRTSPFREPVLVLGDWEKYVDDS 1133          
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A7S3JR88_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR88_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.800e-37
Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 1
Query:    1 VSGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRPPRDDMYYNARTGEGKWK 447
            V+GEIRWRRPQ+LLEL+ RP C +CG FEA+ ECA C+EFFC+ C+      +H GGKR  H FR+LYD YGKRVDYG+G+F S WPT+I Q      D+  G  LRV+P RE  E    W RY  + +G P     YYN  +GEG ++
Sbjct:  385 VTGEIRWRRPQELLELMKRPICDNCGYFEAWLECATCSEFFCADCWNS----IHYGGKRAAHPFRSLYDAYGKRVDYGDGDFDSRWPTEILQ------DDLAGVLLRVAPYREPIEICGAWHRY--EENGIP----YYYNPISGEGSYE 517          
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: W4GZ43_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZ43_9STRA)

HSP 1 Score: 144 bits (362), Expect = 5.710e-37
Identity = 73/142 (51.41%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    4 SGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRPPRDDMYYNART 429
            +GEIR R PQDLL+LLP+P C DC +  A  EC DC EFFC+ C+      +H+GG+R  H FR L+DYYGKR+DYG+GEFPS WP++IAQ      DE +GW LR SP RE S    DW +Y  D+  R    + Y+N  T
Sbjct: 1022 TGEIRHRMPQDLLDLLPKPRCNDCDVEVAMVECGDCGEFFCNDCWHA----IHAGGRRRKHCFRTLFDYYGKRIDYGDGEFPSVWPSEIAQ------DELDGWYLRTSPFREPSLVLGDWEKYVDDTSHR----EWYFNPTT 1149          
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A485K8X4_9STRA (Aste57867_848 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8X4_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.690e-36
Identity = 73/142 (51.41%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    4 SGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRPPRDDMYYNART 429
            +GEIR R PQDLL+LLPRP C DC + +A  EC DC EFFC  C+      +H+GG+R  H FRALYD+YGKR+DYG+GEFPS WP++I Q      DE +GW LRVSP RE      +W +Y  D   R    + Y+N +T
Sbjct: 1064 TGEIRNRIPQDLLDLLPRPRCNDCDVKDAAVECGDCTEFFCKDCWHA----IHAGGRRRVHRFRALYDFYGKRIDYGDGEFPSVWPSEIEQ------DELDGWFLRVSPFREPCLVLGNWEKYVDDKSHR----EWYFNPKT 1191          
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A1V9YA87_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA87_9STRA)

HSP 1 Score: 141 bits (356), Expect = 3.630e-36
Identity = 74/142 (52.11%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    4 SGEIRWRRPQDLLELLPRPSCGDCGLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRPPRDDMYYNART 429
            +GEIR+R PQDLL+LLPRP C DC   +A  EC DC E FC  C+      +H+GGKR  H FRALYDYY KRVDYG+GEFPS WPT++ Q      DE +GW+LR S  R+ +    DW +Y  D D R    + YYN +T
Sbjct:  906 TGEIRYRMPQDLLDLLPRPGCNDCDEADAAVECKDCEEVFCKECWDA----IHAGGKRRRHAFRALYDYYDKRVDYGDGEFPSLWPTEVEQ------DELDGWRLRTSDTRDPAVVVGDWEKYI-DPDARR---EWYYNCKT 1033          
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Match: A0A2D4CFY5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFY5_PYTIN)

HSP 1 Score: 137 bits (346), Expect = 7.060e-36
Identity = 73/150 (48.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    4 SGEIRWRRPQDLLELLPRPSCGDC---GLFEAFSECADCAEFFCSSCYRKASRFVHSGGKRIHHEFRALYDYYGKRVDYGEGEFPSCWPTDIAQARADARDEENGWQLRVSPDREASEERQDWARYAGDSDGRPPRDDMYYNARTGEGKW 444
            +GE+R+RRPQD+L+LLP+P C +C       A  EC DC E FC  C+R     VH+GG+R  H FRALYD+YG+RVDYG+GEFPS WP+++ Q      D+ +GW LR  P RE +E R  WARY   + GR    + +YN  TGE  +
Sbjct:  103 TGEVRFRRPQDVLDLLPQPHCDNCLPSTETVARVECRDCGEMFCDPCWRS----VHAGGRRRGHAFRALYDFYGRRVDYGDGEFPSRWPSEMQQ------DDMDGWFLRAYPHREPTETRGAWARYVDAASGR----EWFYNRDTGENSY 238          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1236.1480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPS0_ECTSI9.090e-6670.32Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A7S1G3C0_9STRA2.790e-3960.58Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A835ZCL3_9STRA4.050e-3958.26WW domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7R9Y828_9STRA1.390e-3850.34Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A024UNS2_9STRA6.510e-3855.91Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S3JR88_9STRA3.800e-3752.35Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W4GZ43_9STRA5.710e-3751.41Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A485K8X4_9STRA2.690e-3651.41Aste57867_848 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A1V9YA87_9STRA3.630e-3652.11Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4CFY5_PYTIN7.060e-3648.67Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1236contigS-dermatodea_contig1236:14002..15226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size447
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1236.1480.1prot_S-dermatodea_contig1236.1480.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1236 14064..14429 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924244.9569483-UTR-S-dermatodea_contig1236:14001..140631622924244.9569483-UTR-S-dermatodea_contig1236:14001..14063Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1236 14002..14063 +
1694079120.9684453-UTR-S-dermatodea_contig1236:14001..140631694079120.9684453-UTR-S-dermatodea_contig1236:14001..14063Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1236 14002..14063 +
1622924244.9906335-UTR-S-dermatodea_contig1236:14429..144361622924244.9906335-UTR-S-dermatodea_contig1236:14429..14436Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1236 14430..14436 +
1694079120.9969406-UTR-S-dermatodea_contig1236:14429..144361694079120.9969406-UTR-S-dermatodea_contig1236:14429..14436Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1236 14430..14436 +
1622924245.0032399-UTR-S-dermatodea_contig1236:15073..152261622924245.0032399-UTR-S-dermatodea_contig1236:15073..15226Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1236 15074..15226 +
1694079121.0062802-UTR-S-dermatodea_contig1236:15073..152261694079121.0062802-UTR-S-dermatodea_contig1236:15073..15226Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1236 15074..15226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924244.9696267-CDS-S-dermatodea_contig1236:14063..141571622924244.9696267-CDS-S-dermatodea_contig1236:14063..14157Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1236 14064..14157 +
1694079120.9778557-CDS-S-dermatodea_contig1236:14063..141571694079120.9778557-CDS-S-dermatodea_contig1236:14063..14157Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1236 14064..14157 +
1622924244.9785194-CDS-S-dermatodea_contig1236:14298..144291622924244.9785194-CDS-S-dermatodea_contig1236:14298..14429Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1236 14299..14429 +
1694079120.987225-CDS-S-dermatodea_contig1236:14298..144291694079120.987225-CDS-S-dermatodea_contig1236:14298..14429Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1236 14299..14429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1236.1480.1

>prot_S-dermatodea_contig1236.1480.1 ID=prot_S-dermatodea_contig1236.1480.1|Name=mRNA_S-dermatodea_contig1236.1480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
MRGLRPVRGVQRVCRLRRVLLLLVLPKGESLRAQRRKTHPPRVSRPVRLL
RQEGGLRRGGVPILLADRHRAGKS*
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mRNA from alignment at S-dermatodea_contig1236:14002..15226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1236.1480.1 ID=mRNA_S-dermatodea_contig1236.1480.1|Name=mRNA_S-dermatodea_contig1236.1480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1225bp|location=Sequence derived from alignment at S-dermatodea_contig1236:14002..15226+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGTCCGGCGAAATACGGTGGAGGCGGCCGCAGGACCTCTTGGAGCTGCT CCCGCGCCCTTCATGCGGGGACTGCGGCCTGTTCGAGGCGTTCAGCGAGT GTGCCGACTGCGCCGAGTTCTTCTGCTCCTCGTGCTACCGAAAGGCGAGT CGCTTCGTGCCAATGCCAGACCGACCTTGTGTGGAGCAGGCGTTTTCTCT GGGTCTGACCTAACACCGCCGTTGAAGATGTTTTAACTTATTTCCGTTTC GTTCCCCGCCCATCGTCAAACTTATTACAACGCGCATTCTGCTTAAGGTG CACAGCGGAGGAAAACGCATCCACCACGAGTTTCGCGCCCTGTACGACTA CTACGGCAAGAGGGTGGACTACGGAGAGGGGGAGTTCCCATCTTGTTGGC CGACCGACATCGCGCAGGCAAGAGCTGATGCCCGCGTGGCAGCCGTTGGC CCAAAAACTGAGATTCCTATGAGTAGCTTGAGGAAGGACGTTCTGGTGAT TTTTTCTCGGCTAGGACTGGGGTTGAACCAATTCGAACTGTCTTACGTGC AGCAACACGTTAACATTTTCTGCCCTGTCGGAGGTGTATACGTTGACCTT GGAATTGCCATTCTGATAATTGAATCAACGCATGTTCGCGACATTTGTTG CATTTACACCAGTTGCTGTTATTCATACCGGCGTCAGTGACACACCGATT CCTGGCCAACTCCACAGAGGAAAAGTTGGTAGCCACGGCTACGCCCGCGA GGTGTGCGTTGGTAGGAAGTGGTGGCTGTATGCATGATACGGCCCATGAC AAAATAGCAGGGTGGAAGAAAAATGTCCGGAAAAGCCTCAAAGGGCCACT CTGTAACCCTATCAATTAAGACTCAAAGGGCTACTCTGTAACCCAATCAA TTAAGACCCAAGAGAAAAATCTAAATCGCTGTAAAATAACGCGCAAAGCG TATTATTGAATACGTATCGATTGTGAGCGCTATGAGGCCTCCCAACTCGG CACGCGGTGTCAAATGATGTAAATACCTGTGTGCCGTGTCGCATGGTACA CGATTGATTGCGACAACACCAGGACGAAGAGAACGGGTGGCAGCTGCGGG TCTCTCCCGATAGAGAGGCGTCCGAGGAGAGGCAAGACTGGGCAAGATAC GCCGGGGACAGCGATGGCCGCCCTCCCAGAGACGATATGTACTACAACGC TAGGACAGGTGAGGGCAAGTGGAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1236:14002..15226+

>mRNA_S-dermatodea_contig1236.1480.1 ID=mRNA_S-dermatodea_contig1236.1480.1|Name=mRNA_S-dermatodea_contig1236.1480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig1236:14002..15226+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGGGACTGCGGCCTGTTCGAGGCGTTCAGCGAGTGTGCCGACTGCG
CCGAGTTCTTCTGCTCCTCGTGCTACCGAAAGGCGAGTCGCTTCATGCGG
GGACTGCGGCCTGTTCGAGGCGTTCAGCGAGTGTGCCGACTGCGCCGAGT
TCTTCTGCTCCTCGTGCTACCGAAAGGCGAGTCGCTTCGTGCACAGCGGA
GGAAAACGCATCCACCACGAGTTTCGCGCCCTGTACGACTACTACGGCAA
GAGGGTGGACTACGGAGAGGGGGAGTTCCCATCTTGTTGGCCGACCGACA
TCGCGCAGGCAAGAGCTGAGTGCACAGCGGAGGAAAACGCATCCACCACG
AGTTTCGCGCCCTGTACGACTACTACGGCAAGAGGGTGGACTACGGAGAG
GGGGAGTTCCCATCTTGTTGGCCGACCGACATCGCGCAGGCAAGAGCTGA
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