mRNA_S-dermatodea_contig1236.1479.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1236.1479.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI) HSP 1 Score: 557 bits (1435), Expect = 2.070e-177 Identity = 666/916 (72.71%), Postives = 725/916 (79.15%), Query Frame = 1
Query: 244 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-ERARKHVVATVIQRHYRGACARVLYAEKYAVRQVEREKAAALRLQCWHRLMNSKALLTVLAFNKELKIYRERNAAKAIGQFYRRYRIRIEALTRRQHHEDDMRAMSRLEDWAATRIQ 2988
VG H SGVA+FD SSMVAWREKQTL+RMK+EE ERAQ+ F QE LT LDI GA+ VGD G+AVLTAQCRRLQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+RSELPFK+GDVTL+ALGEGCP LQ L V GCDGVT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V LSDGMQRDFA TG+QALAK CTGL+TL+LD CFQ++K ALR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTD V +FAR CRRL+R+ LRGVVGVPPPLGAPGI+AVCS C++L LDL EV LED+ALVGFH+++MEKLE+V LM+CPKI+G GVQWL GCPAL+ LN+KGTK T+TALNII ERYPY RIK FFGLSPL K +ERIAIK YASL GA +IQGCFR KAR+E +ARR+R EEKAARMV R+K+G+A LQALRLLKNR IV+QKLWRKAIAR+ RLR REER RKR+ AS M+QQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SRCR+++E R ERA +H T IQRHYRG ARV Y RQVEREK AALRLQCW RL+ SKAL VLA NK+L+ RE+N AK I Q+YRRYR+R+EA R+++HED++RAMSRLEDWAAT+IQ
Sbjct: 13 VGCHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSRSELPFKVGDVTLMALGEGCPELQWLSVKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTDAAVASFARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLELLDLREVLSLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIKV------GDKFFGLSPLPKMRERIAIKEYASLHMGARKIQGCFR--TMKARKEVRARRVRAQEEKAARMVTRALRRKQGKAKLQALRLLKNRXXXXXIVLQKLWRKAIARMCASRLR--REERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKREVAASRMIQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVRVSRCRKLLEQKRRERAHRHASTTTIQRHYRGVIARVHYVILCEKRQVEREKGAALRLQCWQRLITSKALCGVLAMNKQLRQVREQNGAKTIQQYYRRYRVRVEAEARKKNHEDEVRAMSRLEDWAATQIQ 918
BLAST of mRNA_S-dermatodea_contig1236.1479.1 vs. uniprot
Match: A0A835ZCL3_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL3_9STRA) HSP 1 Score: 176 bits (446), Expect = 4.180e-41 Identity = 254/722 (35.18%), Postives = 329/722 (45.57%), Query Frame = 1
Query: 1225 MTGFVTLSDGMQRDFAFTGIQALAKSCTGLETLILDKCFQVAKMALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------GSAVTDTVVIAFARSCRRLQRMRLRGVVGVPPPLGAPGIIAVCS-YCQELTFLDLGEVWGLEDAALVGFH----------------ENRMEKLERVNLMNCPKISGVGVQWLAEGCPALAFLNVKGTKV--------------------------------------------TITALNIINERYPYDRIK---------------------ARTAHTRAHTFFGLSPLKKTKERIAIKSYASLEGGAIRIQGCFRQEAKKAREEAQARRLRRSEEKAARMVADYWRKKKGRAHLQALRLLKNREANCAIVVQKLWRKAIARILVGRLRGEREERKRARCATDIQRMYRGVRGRRKASKQRIEVLKLRKRKAEASLMVQQRFRMYRCDIAVYQLRAAAEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSR-----------CRRVVEGAR-ERARKHVVATVIQRHYRGACARVLY-AEKYAVRQVEREKAAALRLQCWHRLMNS-KALLTVLAFNKELKIYRERNAAKAIGQFYRRYRIRIEALTRRQHHEDDMRAMSRLEDWAATRIQALARGAAGRAK-----AAAHRLEHMA 3051
+ G LSDG +RDFA G+QALA SCT LE+L+LD CF+V+ ALR G+AVTD ++ AR C RL + P G G+ A+C C L LD+ GL D A V F ++ M +L V+L +C + GVGVQWLA+GCPAL LNV GTKV T+T LNII E +P+ IK A A A FFGLSP ++ ++R I +Y + A ++ +R A AR + RR R A +A W +++ RA L+A A+ VQ WR A +R + R R R+E ++A AT+IQR+YRG+RGRR+A+ E L +R+ A+L VQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R C RV+ R +RAR+ A +QRH+RG C R + A +A R RE A A+ W RL S + L + + R AA I +F R R R A R H ++ ++RL+ WAA ++Q++ RG GR AAA + EHMA
Sbjct: 579 LAGIYLLSDGAKRDFAVAGLQALAASCTQLESLVLDGCFRVSTQALRALGARLHALTHLSLARCPAITAQVDGANAHAAADHGVCAMAARCGALTSLDVRDCGAAVTDALLEGVARGCPRLAAL----TAARAPAWGVRGMRALCRRLCASLERLDVSGCAGLTDDAFVPFKASADFGGIKSALPQALDHPMLRLRSVSLCDCAGVGGVGVQWLAQGCPALVTLNVHGTKVRVSGGSSIRNXXXXXXXXXXXXXXXXXSPSSCRRRPYKRQRVAATLTTLNIIAEGFPHSAIKLDDRDIYGSIAAAANSSKDSLAAHAAAAAMPFFGLSPFRRWQDRAVITAYHTRRAAADTLRRAYR--AHCARRRQRERRRLRCGRWLADCLARLWWQRRRRAGLRARTAQLQSRRAAAVAVQSFWRCACSRGELRRRRASRQEERKAARATEIQRVYRGMRGRRRAAGVAREAAALLRRQHTAALTVQCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRVRAAADPPWWRCMRVLADRRAQRARRAAAAACLQRHWRGCCGRARFRAAVHAARARRREAATAVVQLTWLRLKASARRRCRELQEERAARGVRRSAAAVVIQRFVRDKRTRRCAALLRLSHIQELMRLARLQQWAAAKLQSVWRGHRGRCAFRVGAAAARKEEHMA 1294
BLAST of mRNA_S-dermatodea_contig1236.1479.1 vs. uniprot
Match: A0A7S1U2X0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2X0_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.230e-25 Identity = 192/492 (39.02%), Postives = 272/492 (55.28%), Query Frame = 1
Query: 907 ARSELPFKIGDVTLLALGEGCPGLQRLDVAGCDGVTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTGFVTLSDGMQRDFAFTGIQALAKSCTGLETLILDKCFQVAKMALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTDTVVIAFARSCRRLQRMRLRGV-VGVPPPLGAPGIIAVCSYCQELTFLDLGEVWGLEDAALVGFHENRMEK-LERVNLMNCPKISGVGVQWLAEGCPALAFLNVKGTKVTITALNIINERYPYDRIKARTAHTRAHTFFGLSPLKKTKERIAIKSYASLEGGAIRIQGCFRQEAKKAREEAQARRLRRSEEKAARMVADYWRKKKGRAHLQALRLLKNREANCAIVVQKLWRKAIARILVGRLRGEREERKRARCATDIQRMYRGVRGRRKASKQRIEVLKLRKRKAEASL 2376
+RSE PFK+ D++L+ALGE P L+ L ++GC+ +T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSDGM+RDF G+QAL ++ L L CFQ++ A+R + + +V F R R LR + + L G+ + + C +L L+L GL D A++ E++ L ++L NC IS G+ W+++G +L L+++GT+ T TAL +I +RY Y + R FFGL PL++ +R I Y ++ I+IQ +R A+KARE+A+ RR + E AR +++ +R K + A ++Q WR +A+ L+ + R+ A ++QR++RGV GR+KA+ +R E ++ + + AS+
Sbjct: 313 SRSEFPFKVTDISLMALGERTPYLETLLLSGCNMLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLLSDGMKRDFGLEGLQALCGDLDEVQHLHLHGCFQISTTAMRAIANGLGAPLRSLSLSNCPKLTLNGMQALWEHCASLEYLSL---NGCGENIVDNFFRPLVRRPAACLRTLELEDAECLTHTGVAYLVAGCPQLDKLNLSGCVGLNDEAMLHLGESQFYPGLRHLHLTNCTNISDAGLSWMSDGVDSLYTLSLRGTRCTYTALRVIADRYRYSHM------VRNANFFGLYPLRRALDRKMINEYGAMIKATIKIQSLYR--ARKAREKAEMRRRKHYMEWTARKXXXXXXXXXXXKYVELVREYKRFQGRMATLLQNWWRCQLAQKLLKIMLEADYIRRCGVAAVEVQRVWRGVLGRKKATMRRKETMRRLRLQKRASV 793
BLAST of mRNA_S-dermatodea_contig1236.1479.1 vs. uniprot
Match: A0A7S4A538_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A538_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.400e-19 Identity = 109/390 (27.95%), Postives = 168/390 (43.08%), Query Frame = 1
Query: 1243 LSDGMQRDFAFTGIQALAKSCTGLETLILDKCFQVAKMALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GSAVTDTVVIAFARSCRRLQRMRLRGVVGVPPPLGAPGIIAVCSYCQELTFLDLGEVWGLEDAALVGFHENRMEK--LERVNLMNCPKISGVGVQWLAEGCPA--LAFLNVKGTKVTITALNIINERYPYDRIKARTAHTRAHTFFGLSPLKKTKERIAIKSYASLEGGAIRIQGCFRQEAKKAREEAQARRLRRSEEKAARMVADYWRKKKGRAHLQALRLLKNREANCAIVVQKLWRKAIARILVGRLRGEREERKRARCATDIQRMYRGVRGRRKASKQRIEVLKLRKRKAEASLMVQQRFR 2397
L+DG+ R F F GI ALA+ L L LD CFQV+K +L G V+D +V+ AR RL+++ LR G G A+ + C LT LDL GL D A+ F R + L + L +C + +G+ WL EG + + LN+ T AL + +P+ +K R FFG P + + R+ I+++ G ++ Q +R R + R ++ EKA ++ WR KGRA + R RE + A V++ R + AR RLR + R+ R A +Q YR + RR A+ + E LR+++ AS+ +Q+ +R
Sbjct: 499 LTDGVDRGFGFEGILALARDARALRVLRLDGCFQVSKRSLAALAKGLTTLQEIGLAGCPRLHAKEFGDLCKASKDSLEKISLACCGDCVSDDLVVNMARGAPRLKQLSLRDC----ERFGQRGCKALATNCLRLTRLDLTGCAGLTDEAVNEFSTVRWKPPGLRHLLLAHCRGVGDIGLAWLVEGSGSNDIVTLNLTKCSCTSAALKSSRDYFPHSEMK------RDPGFFGFWPKPRWEHRLQIQAFGRDRRGIVKTQASYRGYC--GRRYTKGLRAWKALEKATLVLQKRWRGSKGRARYRYFRAKFIRETHAATVIESGVRGSFARGKARRLRKVDQWRRACRAAILVQAAYRSLVARRYATLRLKEAQILREKRLGASIEIQRIYR 876 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1236.1479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1236.1479.1 >prot_S-dermatodea_contig1236.1479.1 ID=prot_S-dermatodea_contig1236.1479.1|Name=mRNA_S-dermatodea_contig1236.1479.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1017bp MHNNPHDRVATDVKGAIKAFELSSSLPFDDVPVELCQPRAGTRSVDLSDWback to top mRNA from alignment at S-dermatodea_contig1236:1612..13336+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1236.1479.1 ID=mRNA_S-dermatodea_contig1236.1479.1|Name=mRNA_S-dermatodea_contig1236.1479.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=11725bp|location=Sequence derived from alignment at S-dermatodea_contig1236:1612..13336+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1236:1612..13336+ >mRNA_S-dermatodea_contig1236.1479.1 ID=mRNA_S-dermatodea_contig1236.1479.1|Name=mRNA_S-dermatodea_contig1236.1479.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=6102bp|location=Sequence derived from alignment at S-dermatodea_contig1236:1612..13336+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |