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Homology
BLAST of mRNA_S-dermatodea_contig1235.1477.1 vs. uniprot
Match: A0A6H5KUE0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUE0_9PHAE) HSP 1 Score: 424 bits (1091), Expect = 1.280e-138 Identity = 235/404 (58.17%), Postives = 294/404 (72.77%), Query Frame = 3
Query: 207 DDLWIVGRVLESLDDRLGAKQEVLRKHEMGVIDRYAAVISTLDGSLEAREGDEFLAWLTSQVFPASASSSSGEPNEGGEEEARPEGDTAAPAKDAVADDDAATADGKGGESEAAGALGERDRVKSFFSAAAARLNTLVADQEELVFRDRGGDGVD-----KGEKA-------VGVESEGDVAAASPKMTDEEVYQAKLVAHRAMLCHSLSLISASLVKQELKVGLTVGEVAAAARSAYLAGPHERLGAIYALFDTHGDGHLDGESVERAMDAVVLPVTVAAERCYAAAAGVALDNKAAKAMPATMKYALWDVLEVPVKRRCAFEWAEDRKQVGPAEWRVSWEQFEPSRRKFFPEMESVTKNYISEYGRRRSAWHTSRKGRKRAAVYGSALFIGVLIVDNVLSII 1382
++LWIVGRVL+ +D RLGAKQE +R HE+GVI+R+AAV+S LDGSLE REGDEFLAWL SQ F ++ + P GG P A ++ + +GG +E ER V++F SAA+ARLN LV D+E+ +F DRG + KGE+ G ++ G+ SP M+DE++YQA+L AHRAMLCH LSL+S+SL KQ+LK GL++GEV AA RSAYLA P +RL A+Y LFDTHGDGHLD ESV+ A+DAVVL VT A+ERCYAAAA ALD K A MPATMKY LWDV+EVP+KRRC+F WAE+RKQVGP EWRVSW+QF PSRR+ FPEM+SV ++Y++E+ RRRSAWHTSRKGRK A VYGSALF+ VLI+DN+L ++
Sbjct: 101 EELWIVGRVLDDMDTRLGAKQEKIRVHEIGVIERFAAVVSALDGSLEPREGDEFLAWLRSQGFDDASPT----PQPGG----GPXXXXXETAAGTKVENKCSNGKSEGGAAE------ERAEVEAFLSAASARLNALVVDKEDALFGDRGEAEAEESLQAKGERGGXXXXXXXGGDASGEPV-VSPNMSDEDLYQARLGAHRAMLCHFLSLLSSSLGKQQLKTGLSLGEVVAATRSAYLAAPEDRLAAVYPLFDTHGDGHLDTESVDLAVDAVVLSVTAASERCYAAAARPALDKKTAAVMPATMKYVLWDVMEVPMKRRCSFAWAENRKQVGPDEWRVSWDQFAPSRRQHFPEMDSVARDYVAEFSRRRSAWHTSRKGRKEAMVYGSALFVAVLIIDNLLKMV 489
BLAST of mRNA_S-dermatodea_contig1235.1477.1 vs. uniprot
Match: A0A836CPD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD1_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.650e-18 Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 3
Query: 1071 MPATMKYALWDVLEVPVKRRCAFEWAEDRKQVGPAEWRVSWEQFEPSRRKFFPEMESVTKNYISEYGRRRSAWHTSRKGRKRAAVYGSALFIGVLIVDN 1367
MP+ ++YA WD L+ P KRRCAF +AE RKQVGP EW V+ + F ++R +F ++ V + R WH RK RKRAA+YG+ LF +++D
Sbjct: 1 MPSALRYATWDRLDFPSKRRCAFAFAEGRKQVGPVEWHVTADAFLETQRTYFVDLVRVGGALMDVMEDERWQWHMLRKRRKRAAIYGALLFSATVVLDT 99
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-10_002220.1 |
| Exons | 6 |
| Model size | 2096 |
| Cds size | 1095 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1235.1477.1 >prot_S-dermatodea_contig1235.1477.1 ID=prot_S-dermatodea_contig1235.1477.1|Name=mRNA_S-dermatodea_contig1235.1477.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=365bp
MGVIDRYAAVISTLDGSLEAREGDEFLAWLTSQVFPASASSSSGEPNEGG
EEEARPEGDTAAPAKDAVADDDAATADGKGGESEAAGALGERDRVKSFFS
AAAARLNTLVADQEELVFRDRGGDGVDKGEKAVGVESEGDVAAASPKMTD
EEVYQAKLVAHRAMLCHSLSLISASLVKQELKVGLTVGEVAAAARSAYLA
GPHERLGAIYALFDTHGDGHLDGESVERAMDAVVLPVTVAAERCYAAAAG
VALDNKAAKAMPATMKYALWDVLEVPVKRRCAFEWAEDRKQVGPAEWRVS
WEQFEPSRRKFFPEMESVTKNYISEYGRRRSAWHTSRKGRKRAAVYGSAL
FIGVLIVDNVLSII* back to topmRNA from alignment at S-dermatodea_contig1235:3645..7930- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1235.1477.1 ID=mRNA_S-dermatodea_contig1235.1477.1|Name=mRNA_S-dermatodea_contig1235.1477.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4286bp|location=Sequence derived from alignment at S-dermatodea_contig1235:3645..7930- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCGAAACCAGCCACAACGCCACCCCTAGACTCCGCGGCACCGGTGGTA
GATCGTGCCTCTGATGCTAGCGCAAAGAGTGACGACTCCGCCGCAGCTTC
GGCTGTTCCAAGAACAGCAGAAACGGCCAAAGAGGACGCTCCGTCGGCTG
CGGCGGCGCCGGGTGGGGGGGCGGTAGAGCAAGGCAAAGGAAGCGTTGGC
GGAGGCGATGACCTGTGGATCGTGGGCCGTGTCCTGGAGAGTTTGGACGA
CCGGCTAGGGGCAAAACAAGAGGTTTTACGTGAGTGTTAGGTTAGCCAGC
TGCTACACGTGGGGTACTCACGATGGAGGACTTTGTGCCTCGCCGGCTGC
AACGTTGCCGAGTGCACCTTTGATGTGCTGCCACCGAGAGCGCCGGTATT
ATTGCTGTTACACACGGTGCGAGTCCACGCAATCGTTTCACATATCTCCA
GTTGTGTCTGAACGCACCCTATTAATACAGTATACTAATAGAGTAATGTG
CTGGAAACGCGTCGACCTGGGAGGGAACCGATCGAAGGTAGACCCTAACC
GCAAGAGCGTCCCACTGGCACCGCACTCACGGGGTACCGAAGGCATCGAT
CCGGGTAAAACGCCGCATTCTCACGTAGTTCCCCTCCCCCTCCCCCCGCC
CCCGCCCCCGCCCCCGCCATCCGTGCATGAAACGACCGCCGGGGGGGGGA
CTCCCTTACAACACATATGCAGGAAAGCACGAGATGGGGGTGATCGACCG
ATACGCGGCGGTTATCTCGACTCTAGACGGCAGCCTCGAAGCTCGCGAAG
GAGACGAATTCCTGGCATGGTTAACCTCGCAAGTCTTCCCAGCGTCCGCG
TCGTCTTCGAGCGGGGAGCCGAACGAAGGGGGAGAAGAAGAAGCAAGACC
AGAGGGAGACACTGCCGCTCCCGCAAAAGACGCTGTCGCTGACGATGATG
CCGCCACTGCTGATGGCAAGGGAGGGGAGAGCGAAGCTGCCGGGGCGCTC
GGGGAGAGGGACAGGGTGAAGAGTTTCTTCTCGGCCGCGGCTGCGCGGCT
GAACACGCTCGTTGCCGACCAAGAAGAGCTAGTCTTCCGAGACAGGGGCG
GAGACGGCGTGGACAAAGGGGAGAAGGCGGTGGGGGTAGAATCTGAAGGC
GATGTGGCAGCGGCCTCACCCAAAATGACGGACGAGGAAGTTTATCAGGT
GGCGTGAGCTTTCTTGGTGTTTTCTTGGTGTCTTTGGCTGTTGCGTTGGC
ATTCTGGCTGTTTTACCCTGGGCCATAAAAATGCGGGTGTTAAGGCCGCG
CGCAGACGGGCGGGGATAGGATAGATCCTGGTTCTCATTTTCGATTCGTT
CAATTCCGCAAATATCGTCCCTAGGGGGAGACCTCTTCGTTGGAGTCTTC
GTCGGAGTGTTGGAAGCCACTGACTGCAACATAATGCTGGGTAGCCCACG
TCACGGAATTAGGAACTGCCAACAACCCATCTTGAGCTCTCTGCTCTCGG
CAGCACCCGTCTTTATTCTATATATTTTCTCGCTGACGAACCGTTGGCAC
CACCATTCCTACGTGACTTACGTACTGCATAGAGCGAGCGCAGCGATGAA
GTCGTGTCTGACAAGCCTTCCCCCCCGCCCCACTCGCGCGCTTGGCCTTT
TTCTACTTGTCGCGCATGCCGTCTCTGTCGTGACTTGATTTTTTCGGCAC
CAGGCAAAGCTAGTGGCGCACAGAGCTATGCTCTGCCATTCTCTGTCTCT
GATTTCCGCGAGCTTGGTCAAGCAGGAACTCAAAGTTGGGTTGACAGTAG
GAGAGGTAGCGGCGGCGGCGAGGTCAGCCTACCTGGCTGGTCCTCACGAG
AGACTAGGTGAGGCGGATTCAGGACGCTGTTGTAATGACAGAAAGCTGCA
ACCCGTCATCTGTAGATGCTTCACAGCTAGACTCGGCCGACCCCTCTGGT
GTGTCCCACTTTTGATATGTTACAGTGCTTGGCGTGTTGTTCAACCTCGC
CAACAGCCGCCATCTGCCGGATCTCGCCGGGTTTTTTTCCAACCAGGGGC
GATTTACGCGCTGTTCGACACGCACGGCGATGGGCACCTCGACGGCGAAA
GCGTCGAGCGTGCGATGGATGCAGTGGTTCTTCCCGTGACGGTGGCAGCC
GAACGATGCTACGCAGCGGCCGCGGGCGTGGCGCTTGACAATAAGGCGGC
GAAGGCGATGCCGGCGACAATGAAGTATGCCCTGTGGGACGTGCTAGAGG
TGCCGGTGAAGCGGCGGTGCGCCTTCGAGTGGGCGGAAGATCGGAAGCAG
GTGAGCGCGTGATCTCGGTCGGTACGGGGGGCGTGGGCGGGAGCCCGGTG
CTAACTTGCTTCTTGCTGCCTTGACAAGCTTGGGCGTGATAATGTTGACT
GAAACGAGATTTGTACTTGTGACGCATCGCTGGCGTTATCTGCAGTCGGT
AGTTTTCCCCCGGCGCGAAATATTTGTTCAATGGTAACTGTCTTGTGCGT
CGGACGCACCGGAGGCGTCTCGAGACTCGGCGGTAGGCGTTTTGCTGGAA
GAACGCGAGGATCTGCCTCGCGTTCTATGACCGTGGCTACGTCAAGAAGT
AGAGAGCCGCGATTCTTGGCGGCATATAACTGTTCAAACTTGACCAACCC
TTCGTTGTCTCGAGCGCAGGTCGGGCCGGCCGAATGGCGAGTAAGCTGGG
AGCAGTTCGAGCCATCCCGAAGAAAGTTCTTCCCGGAAATGGAATCCGTC
ACAAAAAAGTGAGCGTCCACATACTCTCTAACCCCCCACCACTCGTCCCC
ACGCGGAGTTAGAAGAGTAGCGTCGAGGATTGAACGATTACAATTCGTGA
CGTGGCTTTCGTAGGGCAGGTTTGCTTCGCGGCTGTGCGTGAAAGGATGG
CGCTGCCCTGAATGCCGCCCGCGGTGCTAAACGTCGTGCTGCGCTGTTGG
TCAGAGATGATCAGATAGGCGACCCGCTGACTTGGCCCTCGCCACGTTAC
TCGCGATGAGAGCACCAGTTTATTTTGTCCGTTTTGAGAGTTCTCCGTAG
ATTCTTGTCGCAGAGGCTTGCCCGTCATTGTTGTGCCCGCAGCATGAACG
CTATTGCCCATTTGCAGTCTCTCTAGGTAGCTCTTCCCCGCCAGCGGGGT
CAAAAGCGGGCGCACGTCGTGCTAGTGCTAAGTTGTGATCATCGCCAGCC
TTTGGAGTTCGCTTGATTGACGCTGATTTGATGGCAACGCTTTTGCGACG
AAATGTGTATCAACAGAGCGGTTGACCGTTTGCCACTTATACGGCCTCAA
ACGGAATGCGGACCCTTCTTAGCTCTGACGTTATGCGGTGAAACCGCGAT
GCCGGCATCTGTGCCACACCTTATCCACCCAAAACCCCACCAACCAACGC
ACCCACCCGCCCCTATGTACGACACCCCCCGTCTCCCACCAGCTATATTT
CCGAGTACGGCCGACGACGATCGGCGTGGCATACCTCCCGCAAGGGGCGC
AAGAGAGCGGCTGTTTACGGCTCGGCGTTATTCATTGGTGTCTTAATCGT
GGATAACGTGCTGTCGATAATTTGAGCAAAACCTCGAGGTTAGACTTTGC
TTTGTGTTTTAAACCCCACGTGGGCTAGCGCAGGCGTGCTGAGATTTCTG
TCGGAGGGGGTTGCCGGGGAGAGGTAAGCTTGTTATAGTCCCAGACCTTT
CTAGACAGCGCGACCCGTCCCTGTCGGAGATGAAGGTTGGTGCCACGTCG
GCCTCAAGGGAGGGACGGGCTAGCGCCCCTTGACCAGCAGTGCAGTGAAC
GGATGGAGCCGTCGCGGAAGTTGAAGAGAAACGGGATTGGCCTAGTTGGA
GACACGGGAGACTTTGCCATCTATCAATCAACGTGGAGCCTCATAGTGGT
GACACCCGCACACGCCGAATATCTGCGATACAGCTGTAGCAGTACGCATA
CGTGCGGTAATAGCTTTGTACGCGTACGTACACGCGCAATGGAAGGCGGC
CTACGGCAAAGACGACACTGCCCACAGTCACGGCGGTCTGCGCGATATCG
ATCTCCAGCACATCGTGGCTACTCGCTCCGTGGTCGTTGCTGTGGACGCT
CATGCTACGGTGTCTTCTGATGGTTCTGCTTCTTGCACTGCTTCCTGCAA
ATTCGACACACCACCGGGCTGTTACTATGTCCTTGGTAAGATAAAATATT
GTAGCACCATACTTGTACTTGTAAACGTTTTGCGTCTTTTTACCCGAACC
GCGCCCCTCTTGCACGGCATACATACACATACACGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1235:3645..7930- >mRNA_S-dermatodea_contig1235.1477.1 ID=mRNA_S-dermatodea_contig1235.1477.1|Name=mRNA_S-dermatodea_contig1235.1477.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2190bp|location=Sequence derived from alignment at S-dermatodea_contig1235:3645..7930- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGTGATCGACCGATACGCGGCGGTTATCTCGACTCTAGACGGCAG
CCTCGAAGCTCGCGAAGGAGACGAATTCCTGGCATGGTTAACCTCGCAAG
TCTTCCCAGCGTCCGCGTCGTCTTCGAGCGGGGAGCCGAACGAAGGGGGA
GAAGAAGAAGCAAGACCAGAGGGAGACACTGCCGCTCCCGCAAAAGACGC
TGTCGCTGACGATGATGCCGCCACTGCTGATGGCAAGGGAGGGGAGAGCG
AAGCTGCCGGGGCGCTCGGGGAGAGGGACAGGGTGAAGAGTTTCTTCTCG
GCCGCGGCTGCGCGGCTGAACACGCTCGTTGCCGACCAAGAAGAGCTAGT
CTTCCGAGACAGGGGCGGAGACGGCGTGGACAAAGGGGAGAAGGCGGTGG
GGGTAGAATCTGAAGGCGATGTGGCAGCGGCCTCACCCAAAATGACGGAC
GAGGAAGTTTATCAGATGGGGGTGATCGACCGATACGCGGCGGTTATCTC
GACTCTAGACGGCAGCCTCGAAGCTCGCGAAGGAGACGAATTCCTGGCAT
GGTTAACCTCGCAAGTCTTCCCAGCGTCCGCGTCGTCTTCGAGCGGGGAG
CCGAACGAAGGGGGAGAAGAAGAAGCAAGACCAGAGGGAGACACTGCCGC
TCCCGCAAAAGACGCTGTCGCTGACGATGATGCCGCCACTGCTGATGGCA
AGGGAGGGGAGAGCGAAGCTGCCGGGGCGCTCGGGGAGAGGGACAGGGTG
AAGAGTTTCTTCTCGGCCGCGGCTGCGCGGCTGAACACGCTCGTTGCCGA
CCAAGAAGAGCTAGTCTTCCGAGACAGGGGCGGAGACGGCGTGGACAAAG
GGGAGAAGGCGGTGGGGGTAGAATCTGAAGGCGATGTGGCAGCGGCCTCA
CCCAAAATGACGGACGAGGAAGTTTATCAGGCAAAGCTAGTGGCGCACAG
AGCTATGCTCTGCCATTCTCTGTCTCTGATTTCCGCGAGCTTGGTCAAGC
AGGAACTCAAAGTTGGGTTGACAGTAGGAGAGGTAGCGGCGGCGGCGAGG
TCAGCCTACCTGGCTGGTCCTCACGAGAGACTAGGCAAAGCTAGTGGCGC
ACAGAGCTATGCTCTGCCATTCTCTGTCTCTGATTTCCGCGAGCTTGGTC
AAGCAGGAACTCAAAGTTGGGTTGACAGTAGGAGAGGTAGCGGCGGCGGC
GAGGTCAGCCTACCTGGCTGGTCCTCACGAGAGACTAGGGGCGATTTACG
CGCTGTTCGACACGCACGGCGATGGGCACCTCGACGGCGAAAGCGTCGAG
CGTGCGATGGATGCAGTGGTTCTTCCCGTGACGGTGGCAGCCGAACGATG
CTACGCAGCGGCCGCGGGCGTGGCGCTTGACAATAAGGCGGCGAAGGCGA
TGCCGGCGACAATGAAGTATGCCCTGTGGGACGTGCTAGAGGTGCCGGTG
AAGCGGCGGTGCGCCTTCGAGTGGGCGGAAGATCGGAAGCAGGGGCGATT
TACGCGCTGTTCGACACGCACGGCGATGGGCACCTCGACGGCGAAAGCGT
CGAGCGTGCGATGGATGCAGTGGTTCTTCCCGTGACGGTGGCAGCCGAAC
GATGCTACGCAGCGGCCGCGGGCGTGGCGCTTGACAATAAGGCGGCGAAG
GCGATGCCGGCGACAATGAAGTATGCCCTGTGGGACGTGCTAGAGGTGCC
GGTGAAGCGGCGGTGCGCCTTCGAGTGGGCGGAAGATCGGAAGCAGGTCG
GGCCGGCCGAATGGCGAGTAAGCTGGGAGCAGTTCGAGCCATCCCGAAGA
AAGTTCTTCCCGGAAATGGAATCCGTCACAAAAAAGTCGGGCCGGCCGAA
TGGCGAGTAAGCTGGGAGCAGTTCGAGCCATCCCGAAGAAAGTTCTTCCC
GGAAATGGAATCCGTCACAAAAAACTATATTTCCGAGTACGGCCGACGAC
GATCGGCGTGGCATACCTCCCGCAAGGGGCGCAAGAGAGCGGCTGTTTAC
GGCTCGGCGTTATTCATTGGTGTCTTAATCGTGGATAACGTGCTGTCGAT
AATTTGACTATATTTCCGAGTACGGCCGACGACGATCGGCGTGGCATACC
TCCCGCAAGGGGCGCAAGAGAGCGGCTGTTTACGGCTCGGCGTTATTCAT
TGGTGTCTTAATCGTGGATAACGTGCTGTCGATAATTTGA back to top
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