mRNA_S-dermatodea_contig12320.1462.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12320.1462.1
Unique NamemRNA_S-dermatodea_contig12320.1462.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Match: D7FHJ7_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ7_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.360e-15
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 SLTAALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVITAFDG 159
            +LTAAL  AG GDTISL DG Y +P+VTM AG EGNPLVI+G RDAV+  + G
Sbjct:   64 TLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTG 116          
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Match: D8LJ28_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ28_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 9.170e-15
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 SLTAALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVITAFDG 159
            +LTAAL  AG GD ISLADG Y +PIVTM AG EGNPLVI G R A+I  F G
Sbjct:   46 TLTAALEVAGAGDIISLADGIYREPIVTMNAGVEGNPLVITGGRGAIINYFSG 98          
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Match: A0A6H5KG59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG59_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 9.220e-15
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 SLTAALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVITAFDG 159
            +LTAAL  AG GDTISL DG Y +P+VTM AG EGNPLVI+G RDAVI  + G
Sbjct:   76 TLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRDAVINYYTG 128          
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.030e-14
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 SLTAALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVITAFDG 159
            +LTAAL  AG GD +SLADGTY +PIVTM AG EGNPLVI G R A+I  F G
Sbjct:   45 TLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSG 97          
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.110e-13
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 SLTAALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVITAFDG 159
            +L AAL  AG GDTISL DG Y +P+VTM AG EGNPLVI+G RDAV+  + G
Sbjct:   91 TLAAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTG 143          
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.570e-12
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 SLTAALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVITAFD 156
            S+ +ALA AG GDT+ LADGTY++ IVT+  GE GNPL+I G RDA++ A D
Sbjct:   26 SIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVNAGD 77          
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Match: UPI000686D38E (hypothetical protein n=1 Tax=Pseudonocardia acaciae TaxID=551276 RepID=UPI000686D38E)

HSP 1 Score: 68.2 bits (165), Expect = 3.790e-12
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 SLTAALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVITAFDG 159
            SL+ ALA A PG TI LADGTY    V   AGEEGNP+ +KGSRDAV+T  DG
Sbjct:   62 SLSQALAGAKPGRTIELADGTYTGKFVINTAGEEGNPITLKGSRDAVLTGGDG 114          
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Match: UPI00040FBF9D (hypothetical protein n=1 Tax=Pseudonocardia spinosispora TaxID=103441 RepID=UPI00040FBF9D)

HSP 1 Score: 60.5 bits (145), Expect = 2.110e-9
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 SLTAALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVITAFD 156
            SLT+AL+ A PG TI +ADGTY    V   AG++GNP+ +KGSR AV+   D
Sbjct:   92 SLTSALSAAQPGQTIEMADGTYSGKFVINTAGQQGNPITLKGSRKAVLDGGD 143          
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Match: A0A498DPT3_9ACTN (Sheath polysaccharide-degrading enzyme n=1 Tax=Streptomyces sp. Z26 TaxID=2500177 RepID=A0A498DPT3_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-7
Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   13 ALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVITAFDG 159
            ALA A PGDTI LADGTY+      A+G E  P+ + GS DAV+TA  G
Sbjct:   55 ALASARPGDTIRLADGTYEGNFAATASGSESAPVTLTGSADAVLTAGGG 103          
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Match: UPI001983A91C (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI001983A91C)

HSP 1 Score: 52.0 bits (123), Expect = 2.430e-6
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    4 LTAALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVI 144
            LT ALAYA PG TI LADGTY+   V   +G   + + ++GSR+AV+
Sbjct:  237 LTDALAYAAPGQTIQLADGTYNGRFVASMSGTSSSKITLQGSRNAVL 283          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12320.1462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FHJ7_ECTSI2.360e-1566.04EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJ28_ECTSI9.170e-1567.92EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KG59_9PHAE9.220e-1567.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1D2_9PHAE6.030e-1467.92Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D8LJ42_ECTSI2.110e-1364.15FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KT05_9PHAE2.570e-1259.62Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
UPI000686D38E3.790e-1264.15hypothetical protein n=1 Tax=Pseudonocardia acacia... [more]
UPI00040FBF9D2.110e-953.85hypothetical protein n=1 Tax=Pseudonocardia spinos... [more]
A0A498DPT3_9ACTN1.390e-755.10Sheath polysaccharide-degrading enzyme n=1 Tax=Str... [more]
UPI001983A91C2.430e-651.06Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12320contigS-dermatodea_contig12320:318..476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.9
Seed ortholog evalue7.9e-10
Seed eggNOG ortholog1123023.JIAI01000002_gene5126
KEGG koko:K01179
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs2I8D7@201174,4DY7M@85010,COG3420@1,COG3420@2
EC3.2.1.4
COG Functional cat.P
CAZyGH5,GH9
Best tax levelPseudonocardiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924243.668989-CDS-S-dermatodea_contig12320:317..4761622924243.668989-CDS-S-dermatodea_contig12320:317..476Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12320 318..476 -
1694079120.040729-CDS-S-dermatodea_contig12320:317..4761694079120.040729-CDS-S-dermatodea_contig12320:317..476Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12320 318..476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12320.1462.1prot_S-dermatodea_contig12320.1462.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12320 318..476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12320.1462.1

>prot_S-dermatodea_contig12320.1462.1 ID=prot_S-dermatodea_contig12320.1462.1|Name=mRNA_S-dermatodea_contig12320.1462.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
SLTAALAYAGPGDTISLADGTYDDPIVTMAAGEEGNPLVIKGSRDAVITA
FDG
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mRNA from alignment at S-dermatodea_contig12320:318..476-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12320.1462.1 ID=mRNA_S-dermatodea_contig12320.1462.1|Name=mRNA_S-dermatodea_contig12320.1462.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at S-dermatodea_contig12320:318..476- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCTCACCGCAGCCCTAGCGTACGCGGGTCCGGGCGACACCATATCTTT GGCAGATGGTACCTACGACGACCCCATTGTGACGATGGCCGCTGGGGAAG AGGGTAACCCCTTGGTCATCAAGGGTAGCCGGGACGCCGTGATCACCGCG TTCGATGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12320:318..476-

>mRNA_S-dermatodea_contig12320.1462.1 ID=mRNA_S-dermatodea_contig12320.1462.1|Name=mRNA_S-dermatodea_contig12320.1462.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig12320:318..476- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCTCACCGCAGCCCTAGCGTACGCGGGTCCGGGCGACACCATATCTTT
GGCAGATGGTACCTACGACGACCCCATTGTGACGATGGCCGCTGGGGAAG
AGGGTAACCCCTTGGTCATCAAGGGTAGCCGGGACGCCGTGATCACCGCG
TTCGATGGATCGCTCACCGCAGCCCTAGCGTACGCGGGTCCGGGCGACAC
CATATCTTTGGCAGATGGTACCTACGACGACCCCATTGTGACGATGGCCG
CTGGGGAAGAGGGTAACCCCTTGGTCATCAAGGGTAGCCGGGACGCCGTG
ATCACCGCGTTCGATGGA
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