mRNA_S-dermatodea_contig1231.1456.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1231.1456.1
Unique NamemRNA_S-dermatodea_contig1231.1456.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1231.1456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1231contigS-dermatodea_contig1231:8125..10152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size267
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1231.1456.1prot_S-dermatodea_contig1231.1456.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1231 8125..10152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924243.2136183-CDS-S-dermatodea_contig1231:8124..81691622924243.2136183-CDS-S-dermatodea_contig1231:8124..8169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1231 8125..8169 +
1694079119.699132-CDS-S-dermatodea_contig1231:8124..81691694079119.699132-CDS-S-dermatodea_contig1231:8124..8169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1231 8125..8169 +
1622924243.2223554-CDS-S-dermatodea_contig1231:9123..92341622924243.2223554-CDS-S-dermatodea_contig1231:9123..9234Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1231 9124..9234 +
1694079119.7092268-CDS-S-dermatodea_contig1231:9123..92341694079119.7092268-CDS-S-dermatodea_contig1231:9123..9234Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1231 9124..9234 +
1622924243.23007-CDS-S-dermatodea_contig1231:10041..101521622924243.23007-CDS-S-dermatodea_contig1231:10041..10152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1231 10042..10152 +
1694079119.717005-CDS-S-dermatodea_contig1231:10041..101521694079119.717005-CDS-S-dermatodea_contig1231:10041..10152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1231 10042..10152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1231.1456.1

>prot_S-dermatodea_contig1231.1456.1 ID=prot_S-dermatodea_contig1231.1456.1|Name=mRNA_S-dermatodea_contig1231.1456.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
MLDPTLHLNVLDIYVALYFVSFSFYAGFWARVVRLGLAYCPRLKKKFPWL
MSCTQENLLVAVSVLIGGASVPIPLYYWSTFHGPLADW*
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mRNA from alignment at S-dermatodea_contig1231:8125..10152+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1231.1456.1 ID=mRNA_S-dermatodea_contig1231.1456.1|Name=mRNA_S-dermatodea_contig1231.1456.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2028bp|location=Sequence derived from alignment at S-dermatodea_contig1231:8125..10152+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTTGACCCCACCCTTCATCTGAACGTGCTAGACATCTACGTGGTGAG
TGGGTGAAGTATATTTACATAGCGCCGTGGTTTGGTTCGCGCGCGCTGTT
TTCTGATAACGCATATGACAGCGGATGCGTTTGACCCGCGCTAACAGGTC
CAGGTGCGGCCTGGTACGTTTGGTTGTACGCCTGGTTGTTGTGTTCTCAA
CGGAGGGAAAGCAGATATATCCTCTAACTGGTTTTTGACATATTTTAGGC
GGGTACCATAGCCGTTGATCGCCTACGTGGCAAGGATTTTGTTGCCCCAC
AAAAATGTCAAGAAGACAAGTTGTTGCCTATACATGTGCTTCGTTCTGTT
CATCGAAGGGCGTTGCCATTTAGTCGATACATGTGTACAAGTACAAGGCC
GGGATCGCGCATGTGTGTGCTTTGTCGTCCCCCAAGAGGCATGCGCTCTC
CGCTACACTATCGTACCATGTGACCACGAATCCAGAGGTGGTTCTTCTGT
CAGATATTCGGTTTTCGCCGATTTTATATATAGTTACCATGGGTGTTGCT
GATCCAGTAGCTCTAGGGCTAGCGAGTTATTGCCGAATAATTAGCTTGAA
TCCAGTCGAACCACTTTTTCCCTCGCCGGCGTCGTATGCCTACGAACTGT
GAGTTTCACAGCTCGAACATTTAACCCCATTTTGTTCATTGAGTGGGCTA
CATCCAGTAGCTCTATATAGGGCTAGCGAGTTATTGCGGAATAATTAGCT
TGAATGCGGTCGAATCACGTTTTCCCTCGCCGGCGTCGTACGCCTACGCA
CTGTGAGTTTCACAGCTCGAACATTTAACCCCATTTTGTCCATTGAGTGG
GCTACATCTGGGGGTGGTGACGGTTTAGGGTGGCGTAGTAGGACCAATAC
TACATACCTCAGACAAACACGACTGAGCCGTACCCACTACATTATCATAC
AACGTGGGCGTCCTTCCCGCCTCTTGGCAACCCTTTTCTTGTTGCGCAGG
CGCTGTACTTCGTGTCGTTCTCGTTTTACGCGGGGTTCTGGGCGCGCGTT
GTACGGCTGGGGTTGGCTTACTGCCCCCGCTTGAAGAAAAAGTTCCCGTG
GCTCATGTCGGTGAGAACGCGATAACGCACGCACGTACGACTAATGTGTG
AGGCCATGCTGACTAGGGAGGACTCAGGCTGTACTTCCCCCCTCCCGAGC
TGTCCCGTGGCTCCCGCCCGTAGAATGGTGGTGTGCTTTCCTTACGTGCA
GACGAACAATCATGTGCTATGGTTTGAAGGCTCTTGCCTCGAAAACTACG
CAGCTGCGGCGAGTTAGAAACGATTTCGATCGGGCGGCCTATGTCACTCC
CATGTATTCGTTTTTGAGAGCGCCACCGTTTGGCGTCGGTTGTTTTTCGG
AGATCTGTGAGTGGTAAGCGGATCTGTGACGAGCTAGGGAGCGAGCGTAG
CAGGCGCGCTGCTGGTTGACGAGATTGATTAATATCATTATGGGTGCGGA
GATATTGCTGAATGAGCAGATATGCGGTGTGGGGCATACTCGCAAAGACG
CATAACACGCTGTGCATGCCACGCAAAGGGCATGGTAAACCGTAGCGGAG
CAAGCTACTGTTCTGTGGCACATAAACGTCGCCAGAGGCACGCAGGTCAA
CCATCGTGAAAGCCGTACATCGAGTGCGCTGAACGTTGATGACATCAAAT
TCGTGTCGAGGCTTTTCCGCTCTCTTGGTCGTGATCTTAGTCGAATGTAA
GCTAGACTTCGCAACTCGTACCAAATCTGCACGCTCTATCGTAAGCAGAT
TCAGCGAATTAGATGAGGACGTCAAACCCGGAGTTCATGGTACGAGATGA
AGAGATAGCATCTGGCACTTGCCGAACCTAACAAATACCCAAACCCGTTT
CTCTAACCCAAATCGAGTGCACGCAGGAAAACCTACTTGTAGCCGTGAGC
GTCTTGATAGGCGGAGCATCCGTGCCTATTCCGCTGTACTACTGGTCTAC
CTTCCACGGTCCGCTCGCAGACTGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1231:8125..10152+

>mRNA_S-dermatodea_contig1231.1456.1 ID=mRNA_S-dermatodea_contig1231.1456.1|Name=mRNA_S-dermatodea_contig1231.1456.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig1231:8125..10152+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTTGACCCCACCCTTCATCTGAACGTGCTAGACATCTACGTGATGCT
TGACCCCACCCTTCATCTGAACGTGCTAGACATCTACGTGGCGCTGTACT
TCGTGTCGTTCTCGTTTTACGCGGGGTTCTGGGCGCGCGTTGTACGGCTG
GGGTTGGCTTACTGCCCCCGCTTGAAGAAAAAGTTCCCGTGGCTCATGTC
GGCGCTGTACTTCGTGTCGTTCTCGTTTTACGCGGGGTTCTGGGCGCGCG
TTGTACGGCTGGGGTTGGCTTACTGCCCCCGCTTGAAGAAAAAGTTCCCG
TGGCTCATGTCGTGCACGCAGGAAAACCTACTTGTAGCCGTGAGCGTCTT
GATAGGCGGAGCATCCGTGCCTATTCCGCTGTACTACTGGTCTACCTTCC
ACGGTCCGCTCGCAGACTGGTGATGCACGCAGGAAAACCTACTTGTAGCC
GTGAGCGTCTTGATAGGCGGAGCATCCGTGCCTATTCCGCTGTACTACTG
GTCTACCTTCCACGGTCCGCTCGCAGACTGGTGA
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