mRNA_S-dermatodea_contig12309.1455.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12309.1455.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE) HSP 1 Score: 349 bits (896), Expect = 1.490e-108 Identity = 208/452 (46.02%), Postives = 280/452 (61.95%), Query Frame = 1
Query: 10 PPPSMNRSIVYAYGVRMEQDGAAPDPAKHLFFCMFGETCRENSSKGNTHNAIAISNKETGNATRHLK-AHGIASKKATATKVKKLALEANGGKWSTNETEAPDRSTRSLALMWVKSFVVGKLLPCSFASNEDVRSFFELACTANFPKD-LSTSVIEHYVTEIYSATVNETSRVLLAAVSGAGGPLLHAAVDVGTSRGYNEKRIGLRVFWMSSTWDLRTALLAVKLFQSSPTF-DNERFSGALLFWVKEVLKEYGLTSSHIFSTITDTVSDAKSPYAKLADSKWERCFPRMLSNALAEGFGIRGVRSS---LSARNVLDRVKKVVEDTAINSSVSKMEFEDAQKFLRGSSAHVVDTVPLPWSSTCNVLEAVLLDWVALEKHYR--DERSVFLLADIKTSIEELYSLMKPVVVIINNARKAGEPTGVASFLEMVALRTSVLHTGKDLRIQSPKR 1341
PPPS RSIV+ +GV EQD A PDP K ++CM + CRE S G T I K TGNATRHL+ AHGI SKK K + AN K ++ D R + LM+VK F++ LL S + ++DVR+FFE+ C FPK L +I+H+V E+Y ATV++ S + A++GAGG +LHA D+ TS+ NEK IGLR+FW +ST+ L +AL+AVKLFQ S +++ S LL WV+EVLKE+GL ++H+F T+TD SD K K+ S WE CFP ML+ L E FG R++ L AR V+D VKKVVE S++ K ++D Q L G S +V+ VP W STCNVLE +L W ALE+HY+ ++ F LA KT IEELYSLMKP+ VI+ +++ G PTG+++F +V LR L K L + P++
Sbjct: 64 PPPSGTRSIVFDHGVSFEQDCARPDPKKKRWYCMGSDRCRELSMAGKTW--INCQEKGTGNATRHLRDAHGIVSKKTDTAKKTRGTRTANVSKHKEAVMKSSDPG-RVMLLMYVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVVELYDATVSKFSYSIRKAITGAGGAVLHANFDLWTSKWSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSKQLSDILLIWVQEVLKEFGLDTNHLFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNLGARQVIDTVKKVVEHLN-KSTLMKARYDDIQVLLYGKSMKLVNAVPHRWISTCNVLEEILRSWQALEEHYQKNEQGGSFPLAQHKTVIEELYSLMKPISVIMKESQEKGLPTGLSTFAALVMLRADTLDVTKPLEVTVPRK 511
BLAST of mRNA_S-dermatodea_contig12309.1455.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 142 bits (358), Expect = 5.930e-33 Identity = 116/362 (32.04%), Postives = 171/362 (47.24%), Query Frame = 1
Query: 343 WVKSFVVGKLLPCSFASNEDVRSFFELACTANFPKD-LSTSVIEHYVTEIYSATVNETSRVLLAAVSGAGGPLLHAAVDVGTSRGYNEKRIGLRVFWMSSTWDLRTALLAVKLFQSSPT---FDNERFSGALLFWVKEVLKEYGLTSSHIFSTITDTVSDAKSPYAK-LADSKWERCFPRMLSNALAEGFGIR---GVRSSLSARNVLDRVKKVVEDTAINSSV-SKMEFEDAQKFLRGSSAH--VVDTVPLPWSSTCNVLEAVLLDWVALEKHYRDERSVFLLADIKTSIEELYSLMKPVVVIINNARKAGEPTGVASFLEMVALRTSVLHTGKDLRIQSPKR-----EAEGGEPPSVASV 1380
WVK V+ P S+ VR FP L + V E Y+AT + + A V G P LH +D+ + +G+R+F++ W L++ LLAV+ F +PT F+NER S L ++ +VL+E+GL S +FS +D SD K L W+ C ML+ +L E G R + +AR V+ VKKVVE + S +K F++ Q H +V+ P WS VLEA +++ V ++ Y E SV LA + I+ELYSL+KPV +I ++ PTG A+ L + L+ S + L + +P R E GG SV
Sbjct: 3 WVKWHVIEGFCPLSYGEKRWVRESLNQIAAKGFPLGRLHKEAVAKMVVEYYAATTAQFQAEITAEVGGV--PRLHLDLDLWVDKSSTLMFMGVRLFYIDREWRLKSRLLAVRQF--NPTLEMFENERLSAVLEKYLTDVLEEFGLDVSMLFSATSDAGSDVKHRLCHTLIPRLWKSCVCHMLNCSLVEAIGTRVDSRKPGNPAARKVVLAVKKVVEHIRRSKSPGAKAIFQEEQVRHYSQCLHRKLVNVAPQRWSGVSGVLEATIVNRVGIDGVYAREGSVNPLAPHENEIDELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTPVRAQGWPEGTGGGERKATSV 360
BLAST of mRNA_S-dermatodea_contig12309.1455.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE) HSP 1 Score: 137 bits (345), Expect = 4.390e-31 Identity = 120/448 (26.79%), Postives = 211/448 (47.10%), Query Frame = 1
Query: 28 RSIVYAYGVRMEQDGAAPDPAKHL-FFCMFGETCRENSSKGNTHNAIAISNKETGNATRHLK-AHGIASKKATATKVKKLALEANGGKWSTNETEA-PDRSTRSLALMWVKSFVVGKLLPCSFASNEDVRSFFELACTANFP----KDLSTSVIEHYVTEIYSATVNETSRVLLAAVSGAGGPLLHAAVDVGTSRGYNEKRIGLRVFWMSSTWDLRTALLAVKLFQSSPT--FDNERFSG-ALLFWVKEVLKEYGLTSSHIFSTITDTVSDAKSPYAKLADSKWERCFPRMLSNALAEGFGIRGVRSSLS---ARNVLDRVKKVVEDTAINSSVSKMEFEDAQKFLRGSSAH--VVDTVPLPWSSTCNVLEAVLLDWVALEKHYRDERSVFLLADIKTSIEELYSLMKPVVVIINNARKAGEPTGVASFLEMVALRTSVLHTGKDLRI 1326
RSI YGV++E + + + C+ CR N + I + T AT HLK HGI A + K K + + K T E+ D +R L + K+F++ S A ++ VR C + + I+ + E+Y+AT + L+ V A P+L+ D+ TSR EK IG+RV +M+ +++ +L VKLF+ P D+ + +G +L W +VL ++GL + + ++D+ SD + AK +W C P M++ +G G+ +S R++L+++KK+++ +S + ++ ++ G+ H + V W ST ++ +L + A++K + ++ VF LA+ KT IEE+YS+++ V + +K E T + V L S L K LR+
Sbjct: 111 RSITAFYGVKLEILPRVHGSHRPMEWACLASVQCR------NERKRLKIFSDATTGATSHLKDKHGIVG--AASAKTAKRKRDQSASKEVTLESAVYKDDPSRYNCLQFTKAFIIHAGCAFSLADHDRVRRCLATMCPDHLDVAAINARGATCIKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIGVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSGSDVSTGIAKAFRREW--CIPHMINRVTIDGTGMSNSPASSKNHLCRDLLEKMKKIIQHFNRSSGDKILLDDELEELSEGNWNHAKLAQAVVQRWVSTAKMMFRILEQFTAIQKCFVEKGKVFPLANYKTEIEEVYSILRAVKTVTEYCQKTYEATMEGGLRQTVQLLISTLEPSKPLRV 548
BLAST of mRNA_S-dermatodea_contig12309.1455.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE) HSP 1 Score: 137 bits (345), Expect = 4.660e-31 Identity = 120/448 (26.79%), Postives = 211/448 (47.10%), Query Frame = 1
Query: 28 RSIVYAYGVRMEQDGAAPDPAKHL-FFCMFGETCRENSSKGNTHNAIAISNKETGNATRHLK-AHGIASKKATATKVKKLALEANGGKWSTNETEA-PDRSTRSLALMWVKSFVVGKLLPCSFASNEDVRSFFELACTANFP----KDLSTSVIEHYVTEIYSATVNETSRVLLAAVSGAGGPLLHAAVDVGTSRGYNEKRIGLRVFWMSSTWDLRTALLAVKLFQSSPT--FDNERFSG-ALLFWVKEVLKEYGLTSSHIFSTITDTVSDAKSPYAKLADSKWERCFPRMLSNALAEGFGIRGVRSSLS---ARNVLDRVKKVVEDTAINSSVSKMEFEDAQKFLRGSSAH--VVDTVPLPWSSTCNVLEAVLLDWVALEKHYRDERSVFLLADIKTSIEELYSLMKPVVVIINNARKAGEPTGVASFLEMVALRTSVLHTGKDLRI 1326
RSI YGV++E + + + C+ CR N + I + T AT HLK HGI A + K K + + K T E+ D +R L + K+F++ S A ++ VR C + + I+ + E+Y+AT + L+ V A P+L+ D+ TSR EK IG+RV +M+ +++ +L VKLF+ P D+ + +G +L W +VL ++GL + + ++D+ SD + AK +W C P M++ +G G+ +S R++L+++KK+++ +S + ++ ++ G+ H + V W ST ++ +L + A++K + ++ VF LA+ KT IEE+YS+++ V + +K E T + V L S L K LR+
Sbjct: 32 RSITAFYGVKLEILPRVHGSHRPMEWACLASVQCR------NERKRLKIFSDATTGATSHLKDKHGIVG--AASAKTAKRKRDQSASKEVTLESAVYKDDPSRYNCLQFTKAFIIHAGCAFSLADHDRVRRCLATMCPDHLDVAAINARGATCIKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIGVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSGSDVSTGIAKAFRREW--CIPHMINRVTIDGTGMSNSPASSKNHLCRDLLEKMKKIIQHFNRSSGDKILLDDELEELSEGNWNHAKLAQAVVQRWVSTAKMMFRILEQFTAIQKCFVEKGKVFPLANYKTEIEEVYSILRAVKTVTEYCQKTYEATMEGGLRQTVQLLISTLEPSKPLRV 469
BLAST of mRNA_S-dermatodea_contig12309.1455.1 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE) HSP 1 Score: 104 bits (259), Expect = 4.510e-21 Identity = 94/345 (27.25%), Postives = 158/345 (45.80%), Query Frame = 1
Query: 358 VVGKLLPCSF-ASNEDVRSFFELACTANFPKDLSTSVIEHYVTEIYSATVNETSRVLLAAVSGAGGPLLHAAVDVGTSRGYNEKRIGLRVFWMSSTWDLRTALLAVKLFQSSP---TFDNERFSGALLFWVKEVLKEYGLTSSHIFSTITDTVSDAKS-------PYAKLADSKWERCFPRMLSNALAEGFGIRG---VRSSLSARNVLDRVKKVVEDTAINSSVSKMEFEDAQKFLRGSSAHVVDTVPLPWSSTCNVLEAVLLDWVALEKHYRDERSVFLLADIKTSIEELYSLMKPVVVIINNARKAGEPTGVASFLEMVALRTSVLHTGKDLRIQSPKREAE 1350
+V KLLP SF +S +++R+ L ++FP L ++H +TE+Y AT +L V A P+LH +D+ T +G K +G+ +++++++++++ ALL V + + SP R S LL VK +L E GL+ S + S TD+ SD K+ P+ + W C M+ A + FG+ + AR+V+ V KVVE+ SS + +FED Q L G D K + +LYSL++P+ +I + + G P +++M L+ VL+ K+L++ R E
Sbjct: 44 LVEKLLPVSFFSSGDELRTLLALIGDSDFPP-LRPRRVKHLLTELYVATKKVVVGNMLEEVRKAPLPVLHHMIDIWTEKGSGRKFLGVHLYYVTASFEMKHALLCVGVKRYSPDQGALSEARASEVLLEIVKSILVEVGLSPSDLASGTTDSGSDVKAVSVNGLHPHYGVL---WNWCACHMMVKAAEQAFGVHPDPTKSKNPGARDVIKVVIKVVENLN-KSSYLRAKFEDLQTELLGED------------------------------------------DNKNDVLQLYSLLEPLCMITRDGQYGGAPMMADIYMKMGILKMGVLNLEKELKVYETPRVGE 341 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12309.1455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12309.1455.1 >prot_S-dermatodea_contig12309.1455.1 ID=prot_S-dermatodea_contig12309.1455.1|Name=mRNA_S-dermatodea_contig12309.1455.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=456bp MNRSIVYAYGVRMEQDGAAPDPAKHLFFCMFGETCRENSSKGNTHNAIAIback to top mRNA from alignment at S-dermatodea_contig12309:2692..6672- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12309.1455.1 ID=mRNA_S-dermatodea_contig12309.1455.1|Name=mRNA_S-dermatodea_contig12309.1455.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3981bp|location=Sequence derived from alignment at S-dermatodea_contig12309:2692..6672- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12309:2692..6672- >mRNA_S-dermatodea_contig12309.1455.1 ID=mRNA_S-dermatodea_contig12309.1455.1|Name=mRNA_S-dermatodea_contig12309.1455.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2736bp|location=Sequence derived from alignment at S-dermatodea_contig12309:2692..6672- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |