mRNA_S-dermatodea_contig12297.1438.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12297.1438.1
Unique NamemRNA_S-dermatodea_contig12297.1438.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12297.1438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12297contigS-dermatodea_contig12297:994..1921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size781
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12297.1438.1prot_S-dermatodea_contig12297.1438.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12297 1175..1753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924241.6512792-UTR-S-dermatodea_contig12297:993..11741622924241.6512792-UTR-S-dermatodea_contig12297:993..1174Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12297 994..1174 +
1694079118.588838-UTR-S-dermatodea_contig12297:993..11741694079118.588838-UTR-S-dermatodea_contig12297:993..1174Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12297 994..1174 +
1622924241.685172-UTR-S-dermatodea_contig12297:1753..19211622924241.685172-UTR-S-dermatodea_contig12297:1753..1921Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12297 1754..1921 +
1694079118.61806-UTR-S-dermatodea_contig12297:1753..19211694079118.61806-UTR-S-dermatodea_contig12297:1753..1921Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12297 1754..1921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924241.6621454-CDS-S-dermatodea_contig12297:1174..12421622924241.6621454-CDS-S-dermatodea_contig12297:1174..1242Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12297 1175..1242 +
1694079118.5994291-CDS-S-dermatodea_contig12297:1174..12421694079118.5994291-CDS-S-dermatodea_contig12297:1174..1242Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12297 1175..1242 +
1622924241.6754103-CDS-S-dermatodea_contig12297:1389..17531622924241.6754103-CDS-S-dermatodea_contig12297:1389..1753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12297 1390..1753 +
1694079118.6076925-CDS-S-dermatodea_contig12297:1389..17531694079118.6076925-CDS-S-dermatodea_contig12297:1389..1753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12297 1390..1753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12297.1438.1

>prot_S-dermatodea_contig12297.1438.1 ID=prot_S-dermatodea_contig12297.1438.1|Name=mRNA_S-dermatodea_contig12297.1438.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=144bp
MHGRRILRNFAPRSESMTRGGGGLHTRKMVFLHEDLFTTYFVGKVGACYS
LTLQETTYTRSRSTECTILGTLKGNTPQATRNTPHATRHTTGAQLDLPSG
PGSQPKQAAIGAGKQKQKQKQKQKQKQKQKNPAGRLRAHPSAP*
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mRNA from alignment at S-dermatodea_contig12297:994..1921+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12297.1438.1 ID=mRNA_S-dermatodea_contig12297.1438.1|Name=mRNA_S-dermatodea_contig12297.1438.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=928bp|location=Sequence derived from alignment at S-dermatodea_contig12297:994..1921+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTACAAGTCAGGAGGGGCGATTTTGGACAGAATGCTAATACTGCAACCG
AAGTATACCGAGGGTGGCTAAAAGCATGCTCCCCCACGGCTCGAACCGAG
CCACAATTCGGCGTGTCCGCCTTGCACCGACGGAATGCAATCGGCGTGTA
GGCTGCGCCCCAGGTTTGCGTCAGTTCATCCATGCACGGCAGAAGGATTC
TCCGTAACTTTGCACCTCGGTCAGAGAGTATGACGCGCGGGGGGGGGGGG
GGTTAAACCGCCGTCAANNNNNNNNNNGAGGGTGGGGGGGGGGTGCGTGG
GCGTGTGGGGGTGGGCTCGACCGGGGGGGGGGGGAGGTGGTGGCGCGTGG
GGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTTA
CACACACGTAAAATGGTATTTTTGCATGAAGACTTGTTTACCACCTATTT
TGTGGGAAAAGTAGGGGCCTGCTACTCGCTCACGCTGCAGGAAACAACGT
ACACGCGGTCACGGTCGACAGAATGCACAATTTTGGGCACTTTAAAAGGG
AACACGCCCCAAGCCACACGCAACACGCCACACGCCACACGCCACACGAC
GGGTGCTCAATTGGATTTACCTTCAGGGCCCGGGAGTCAACCCAAGCAAG
CAGCGATCGGCGCCGGAAAACAAAAACAAAAACAAAAACAAAAACAAAAA
CAAAAACAAAAACAGAAAAACCCAGCCGGTAGGCTTCGAGCGCACCCCTC
AGCTCCCTGAACTTAAACTGACACTGCAAAACGTCGCTGTGGAGTCGGCA
CCAGCACTCTAGACACATACATTTCCAAGCTACGGACCTCCGTCGGAAGC
CGCCTCGTTAATCGTTACACGCGCGCCTATCCACGACAACGAAGAACACA
GCAATACGCAGACTCGGGGGCACCAAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12297:994..1921+

>mRNA_S-dermatodea_contig12297.1438.1 ID=mRNA_S-dermatodea_contig12297.1438.1|Name=mRNA_S-dermatodea_contig12297.1438.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at S-dermatodea_contig12297:994..1921+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACGGCAGAAGGATTCTCCGTAACTTTGCACCTCGGTCAGAGAGTAT
GACGCGCGGGGGGGGGGGATGCACGGCAGAAGGATTCTCCGTAACTTTGC
ACCTCGGTCAGAGAGTATGACGCGCGGGGGGGGGGGGTTACACACACGTA
AAATGGTATTTTTGCATGAAGACTTGTTTACCACCTATTTTGTGGGAAAA
GTAGGGGCCTGCTACTCGCTCACGCTGCAGGAAACAACGTACACGCGGTC
ACGGTCGACAGAATGCACAATTTTGGGCACTTTAAAAGGGAACACGCCCC
AAGCCACACGCAACACGCCACACGCCACACGCCACACGACGGGTGCTCAA
TTGGATTTACCTTCAGGGCCCGGGAGTCAACCCAAGCAAGCAGCGATCGG
CGCCGGAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAA
AACAGAAAAACCCAGCCGGTAGGCTTCGAGCGCACCCCTCAGCTCCCTGA
GTTACACACACGTAAAATGGTATTTTTGCATGAAGACTTGTTTACCACCT
ATTTTGTGGGAAAAGTAGGGGCCTGCTACTCGCTCACGCTGCAGGAAACA
ACGTACACGCGGTCACGGTCGACAGAATGCACAATTTTGGGCACTTTAAA
AGGGAACACGCCCCAAGCCACACGCAACACGCCACACGCCACACGCCACA
CGACGGGTGCTCAATTGGATTTACCTTCAGGGCCCGGGAGTCAACCCAAG
CAAGCAGCGATCGGCGCCGGAAAACAAAAACAAAAACAAAAACAAAAACA
AAAACAAAAACAAAAACAGAAAAACCCAGCCGGTAGGCTTCGAGCGCACC
CCTCAGCTCCCTGA
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