mRNA_S-dermatodea_contig12286.1432.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12286.1432.1
Unique NamemRNA_S-dermatodea_contig12286.1432.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Match: D8LD59_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD59_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 1.800e-97
Identity = 150/232 (64.66%), Postives = 184/232 (79.31%), Query Frame = 1 
Query:   61 SHSERAGSAWKNVHARGNLKALLAGLVGDYGVQEVLNDHHVHEHTLSKLLPVFRDMVSEYPDTAFPGEAGQKTQVAISNLCYHGKFRADAVMKKKPIKAKGTSGRTYTFAMAAPVGLGDEKKFSKARTSLLEGAFIPRLVELANKHFPEEINSNKRIAEVVDLRHPQHWFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALEVYEQVR 756
            S+S++ GSAWKNVHA+  L+ LL GL  DYGVQE+L  HH+ +HT+SKLL VF D+V ++PDTAFPGEAGQK Q  +S+LCYH KF+ADAV+ K+PI+ + TSGR++TF+   P   G E  F K R  ++E   IPRLVELA + + +EI + KR+  +VDLR+PQ  FPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGA R+PGDGP G+FCGPLRLLALEVYEQ+ 
Sbjct:  394 SYSQQQGSAWKNVHAKKKLRWLLKGLASDYGVQEMLARHHISKHTMSKLLRVFEDLVLDHPDTAFPGEAGQKLQEEMSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKR-GREGPFVKERNDVVEKGLIPRLVELAQESYADEIEATKRMDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGADRQPGDGPAGLFCGPLRLLALEVYEQLN 624
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BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Match: A0A6H5K988_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K988_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 4.290e-92
Identity = 149/249 (59.84%), Postives = 182/249 (73.09%), Query Frame = 1 
Query:   52 SAASHSERAGSAWKNVHARGNLKALLAGLVGDYGVQEVLNDHHVHE--------------HTLSKLLPVFRDMVSEYPDTAFPGEAGQKTQVAISNLCYHGKFRADAVMKKKPIKAKGTSGRTYTFAMAAPVGLGDEKKFSKARTSLLEGAFIPRLVELANKHFPEEINSNKRIAEVVDLRHPQHWFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALEVYEQVR 756
            S  S S++ GSAWKN+HA+  L+ LL GL  DYGVQE+L  HHV +               T+SKLL VF D+V ++PDTAFPGE GQK Q  +S+LCYH KF+ADAV+ K+PI+ + TSGR++TF+   P   G E  F K R  ++E   IPRLVELA + + +EI + KR+  +VDLR+PQ  FPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGA R+PGDGP G+FCGPLRLLALEVYEQ+ 
Sbjct:  305 SGDSFSQQQGSAWKNIHAKKKLRWLLKGLASDYGVQEMLALHHVSKASFSTRISCRQVSVQTMSKLLRVFEDLVLDHPDTAFPGEEGQKLQEEVSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKR-GREGPFVKERNDVVEKGLIPRLVELAQESYADEIEATKRMDNIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYEQLN 552
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BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Match: A0A2V0P3E5_9CHLO (RNA helicase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P3E5_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 5.250e-22
Identity = 53/116 (45.69%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:  409 LGDEKKFSKARTSLLEGAFIPRLVELANKHFPEEINSNKRIAEVVDLRHPQHWFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALEVYEQVR 756
            L + + +S+A    +E A  P         F +++ + +R    +DLR P  WFP AR  KRRI+YHGGPTNSGKTY A+  L  AGAGR       G++CGPLRLLA+EVYE + 
Sbjct:  196 LAEHESYSRA----VENALFPLFTAFCRHAFGQQLTAYERAVAALDLRAPHSWFPYARAIKRRIVYHGGPTNSGKTYNALRAL--AGAGR-------GVYCGPLRLLAMEVYESLN 298
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BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Match: A0A482SRD4_9ARCH (Helicase ATP-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRD4_9ARCH)

HSP 1 Score: 101 bits (251), Expect = 5.750e-22
Identity = 57/142 (40.14%), Postives = 72/142 (50.70%), Query Frame = 1 
Query:  340 KKPIKAKGTSGRTYTFAMAAPVGLGDEK---KFSKARTSLLEGAFIPRLVELANKHFPEEINSNKRIAEVVDLRHPQHWFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALEVYEQVR 756
            K+P      + R     M   V LG  +     +     +L+        + A       I +NK +    DL  P  WFP ARL KR+IIYHGGPTNSGKTY AI+RLK A        G  G++CGPLRLLALE+YE + 
Sbjct:   80 KQPTAVLSHTDRVQLQTMMGKVDLGKVELLEDLADVERKVLKNFLFQHAYDAALHDLENVIVTNKTVCGASDLTMPHQWFPHARLMKRKIIYHGGPTNSGKTYHAIQRLKAADP-----TGGGGLYCGPLRLLALEIYETLN 216
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BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Match: A0A2D4BGH6_PYTIN (RNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGH6_PYTIN)

HSP 1 Score: 100 bits (249), Expect = 2.110e-20
Identity = 55/117 (47.01%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:  424 KFSKARTSLLEG----AFIPRLVELANK--HFPEEINSNKRIAEVVDLRHPQHWFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALEVYEQVR 756
            K  K R  +LE      F P  +E A +  + P     +  + ++ DLR P   +PLA   +RRIIYH GPTNSGKTYQA+ERLK AG      DG  G++CGPLRLLALE+YE++ 
Sbjct:  348 KAEKERQQMLEKKNTFVFYPHFLEFAREKDYIPRTGEGSFTLQQITDLRLPHQLYPLANAMQRRIIYHQGPTNSGKTYQALERLKNAGE-----DG--GLYCGPLRLLALEIYERLN 457
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BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Match: A0A843VLA9_COLES (RNA helicase n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VLA9_COLES)

HSP 1 Score: 100 bits (248), Expect = 2.930e-20
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:  466 IPRLVELANKHFPEEINSNKRIAEVVDLRHPQHWFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALEVYEQVR 756
             P  V+   ++FPEEI   +++ E  DL  P  WFP AR  KRRI+YH GPTNSGKTY A++R  +AG           ++C PLRLLA+EV+++V 
Sbjct:  199 FPAFVDFCLENFPEEIKKYRKLVESADLTAPHTWFPFARAMKRRIVYHCGPTNSGKTYNALQRFMEAGK---------AVYCSPLRLLAMEVFDKVN 286
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BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Match: S8C3I6_9LAMI (RNA helicase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C3I6_9LAMI)

HSP 1 Score: 99.4 bits (246), Expect = 4.450e-20
Identity = 47/97 (48.45%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:  466 IPRLVELANKHFPEEINSNKRIAEVVDLRHPQHWFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALEVYEQVR 756
             P  VE    HFP+EI   KR+ +  D+  P+ WFP AR  KRRIIYH GPTNSGKTY A+ R  +A           G++C PLRLLA+EV+++V 
Sbjct:   90 FPIFVEFCIDHFPKEIRRFKRMVDSADMTKPETWFPFARAMKRRIIYHCGPTNSGKTYNALLRFMEA---------KKGVYCSPLRLLAMEVFDKVN 177
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BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Match: A0A8K1CEJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEJ7_PYTOL)

HSP 1 Score: 99.4 bits (246), Expect = 4.940e-20
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:  463 FIPRLVELAN--KHFPEEINSNKRIAEVVDLRHPQHWFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALEVYEQVR 756
            F P  VE A    +       +  +A++ DLR P   +PLA   KRRIIYH GPTNSGKTY+A+ERLK+AG      DG  G++CGPLRLLALE+YE++ 
Sbjct:  171 FYPHFVEFAQTKNYMARSGEGSFTLAQITDLRLPHELYPLANAMKRRIIYHEGPTNSGKTYEALERLKQAGE-----DG--GLYCGPLRLLALEIYERMN 263
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BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Match: A0A7S3HC17_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC17_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.990e-20
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:  448 LLEGAFIPRLVELANKHFPEEINSNKRIAEVVDLRHPQHWFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALE 738
            ++E   +PR    A     E I S + ++   DLR P  W+P  RL KR+IIYHGGPTNSGKTYQA++RL +A     P  G  G++CGPLRLLALE
Sbjct:   83 VVESVLLPR----AEVELKEVIESYRLLSTATDLRVPHEWYPKTRLMKRKIIYHGGPTNSGKTYQALKRLAEA----DPAKGG-GLYCGPLRLLALE 170
[Close]
BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Match: F0YC56_AURAN (RNA helicase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC56_AURAN)

HSP 1 Score: 98.6 bits (244), Expect = 5.870e-20
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:  544 DLRHPQHWFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALEVYEQVR 756
            DLR P+ W+P ARL +RR+IYHGGPTNSGKTY A+E LK+A A     DG  G++ GPLRLLALEVYE++ 
Sbjct:    5 DLRAPEEWYPKARLSRRRVIYHGGPTNSGKTYHALEALKRADA-----DGGGGVYAGPLRLLALEVYERLN 70
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12286.1432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD59_ECTSI1.800e-9764.66RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5K988_9PHAE4.290e-9259.84RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A2V0P3E5_9CHLO5.250e-2245.69RNA helicase n=1 Tax=Raphidocelis subcapitata TaxI... [more]
A0A482SRD4_9ARCH5.750e-2240.14Helicase ATP-binding domain-containing protein n=1... [more]
A0A2D4BGH6_PYTIN2.110e-2047.01RNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]
A0A843VLA9_COLES2.930e-2046.39RNA helicase n=1 Tax=Colocasia esculenta TaxID=446... [more]
S8C3I6_9LAMI4.450e-2048.45RNA helicase (Fragment) n=1 Tax=Genlisea aurea Tax... [more]
A0A8K1CEJ7_PYTOL4.940e-2051.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3HC17_9STRA4.990e-2050.52Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
F0YC56_AURAN5.870e-2063.38RNA helicase (Fragment) n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12286contigS-dermatodea_contig12286:965..4583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.7
Seed ortholog evalue1.3e-81
Seed eggNOG ortholog2880.D8LD59
Preferred nameSUPV3L1
KEGG rclassRC00061
KEGG koko:K03942,ko:K17675
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0000002,GO:0000003,GO:0000166,GO:0000177,GO:0000178,GO:0000372,GO:0000375,GO:0000376,GO:0000957,GO:0000958,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000965,GO:0001410,GO:0001558,GO:0001889,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003723,GO:0003724,GO:0003725,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006310,GO:0006325,GO:0006378,GO:0006396,GO:0006397,GO:0006399,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007005,GO:0007275,GO:0008026,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009268,GO:0009295,GO:0009607,GO:0009628,GO:0009651,GO:0009653,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010570,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010928,GO:0010929,GO:0010941,GO:0015980,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0019954,GO:0022900,GO:0022904,GO:0023051,GO:0023056,GO:0030154,GO:0030307,GO:0030435,GO:0030436,GO:0030447,GO:0030554,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031974,GO:0032042,GO:0032268,GO:0032270,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032989,GO:0032990,GO:0032991,GO:0034248,GO:0034250,GO:0034458,GO:0034470,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035639,GO:0035690,GO:0035945,GO:0035946,GO:0036094,GO:0036177,GO:0036180,GO:0036187,GO:0040007,GO:0040008,GO:0042221,GO:0042493,GO:0042623,GO:0042645,GO:0042710,GO:0042802,GO:0042803,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043631,GO:0043934,GO:0043936,GO:0043954,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044528,GO:0044764,GO:0045025,GO:0045333,GO:0045727,GO:0045927,GO:0045935,GO:0046034,GO:0046483,GO:0046700,GO:0046983,GO:0047484,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051703,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060255,GO:0060548,GO:0061008,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070129,GO:0070131,GO:0070584,GO:0070784,GO:0070827,GO:0070887,GO:0071025,GO:0071026,GO:0071103,GO:0071214,GO:0071467,GO:0071704,GO:0071840,GO:0072521,GO:0080036,GO:0080038,GO:0080090,GO:0080134,GO:0090304,GO:0090605,GO:0090609,GO:0090615,GO:0090616,GO:0090646,GO:0097159,GO:0097222,GO:0097367,GO:0098798,GO:0104004,GO:0140053,GO:0140097,GO:0140098,GO:1900428,GO:1901000,GO:1901002,GO:1901135,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1902494,GO:1902584,GO:1903311,GO:1905354,GO:2000070,GO:2000112,GO:2000827
EggNOG free text desc.mitochondrial RNA 3'-end processing
EggNOG OGsKOG0953@1,KOG0953@2759
EC1.6.5.3,1.6.99.3,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Exons5
Model size759
Cds size759
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12286.1432.1prot_S-dermatodea_contig12286.1432.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12286 965..4583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924241.292848-CDS-S-dermatodea_contig12286:964..11101622924241.292848-CDS-S-dermatodea_contig12286:964..1110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12286 965..1110 -
1694079118.2874572-CDS-S-dermatodea_contig12286:964..11101694079118.2874572-CDS-S-dermatodea_contig12286:964..1110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12286 965..1110 -
1622924241.3080823-CDS-S-dermatodea_contig12286:2068..22081622924241.3080823-CDS-S-dermatodea_contig12286:2068..2208Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12286 2069..2208 -
1694079118.3004236-CDS-S-dermatodea_contig12286:2068..22081694079118.3004236-CDS-S-dermatodea_contig12286:2068..2208Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12286 2069..2208 -
1622924241.319484-CDS-S-dermatodea_contig12286:2745..29591622924241.319484-CDS-S-dermatodea_contig12286:2745..2959Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12286 2746..2959 -
1694079118.3105464-CDS-S-dermatodea_contig12286:2745..29591694079118.3105464-CDS-S-dermatodea_contig12286:2745..2959Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12286 2746..2959 -
1622924241.3279383-CDS-S-dermatodea_contig12286:3208..32781622924241.3279383-CDS-S-dermatodea_contig12286:3208..3278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12286 3209..3278 -
1694079118.3200243-CDS-S-dermatodea_contig12286:3208..32781694079118.3200243-CDS-S-dermatodea_contig12286:3208..3278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12286 3209..3278 -
1622924241.3361495-CDS-S-dermatodea_contig12286:4394..45831622924241.3361495-CDS-S-dermatodea_contig12286:4394..4583Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12286 4395..4583 -
1694079118.3324316-CDS-S-dermatodea_contig12286:4394..45831694079118.3324316-CDS-S-dermatodea_contig12286:4394..4583Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12286 4395..4583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12286.1432.1

>prot_S-dermatodea_contig12286.1432.1 ID=prot_S-dermatodea_contig12286.1432.1|Name=mRNA_S-dermatodea_contig12286.1432.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=253bp
GRGESSGGGSRDRGGKRSAASHSERAGSAWKNVHARGNLKALLAGLVGDY
GVQEVLNDHHVHEHTLSKLLPVFRDMVSEYPDTAFPGEAGQKTQVAISNL
CYHGKFRADAVMKKKPIKAKGTSGRTYTFAMAAPVGLGDEKKFSKARTSL
LEGAFIPRLVELANKHFPEEINSNKRIAEVVDLRHPQHWFPLARLRKRRI
IYHGGPTNSGKTYQAIERLKKAGAGRKPGDGPVGIFCGPLRLLALEVYEQ
VR*
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mRNA from alignment at S-dermatodea_contig12286:965..4583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12286.1432.1 ID=mRNA_S-dermatodea_contig12286.1432.1|Name=mRNA_S-dermatodea_contig12286.1432.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3619bp|location=Sequence derived from alignment at S-dermatodea_contig12286:965..4583- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTAGGGGGGAGAGCTCAGGCGGCGGTTCAAGGGACCGCGGCGGGAAGCG
CTCGGCAGCCTCGCATTCGGAGCGTGCGGGGTCGGCGTGGAAGAACGTGC
ACGCAAGGGGGAACCTCAAGGCGCTCTTGGCGGGACTTGTGGGTGATTAC
GGCGTGCAGGAGGTGCTCAACGACCACCACGTTCACGAGGTACGTTTCGC
TCCTTCTTGGCGTATATGTTGTAACACTGTGTCCTGGTGCAGCGCAACTG
TTTCTGTGATGTTCTGGGTTTGCGATTCCTGGGCCATCGATGAATCCCAT
GGAAACCTTGCGGTCGGCGGTAGCCAAGTTTAGAAAATGTTTGTCGCGCA
TCGGTACTCTACCCAAGTTTCCTTTACGGACCTAGCTAGTTTAACGTCAC
CGGAGATGTCGCAGCAATACTTCTATCCCGAGCATATGGTGCTCGGGCGA
GCGTACTCGGAGCTCGCTCGCCGAAGGTGGTGGTGGTGGCTGAAACTCCT
GGGGACCAAACGCCTGTCCTTGTTAATCGAAGGCAGATCACTTCACGGAC
GTGTTGGTTTTTTTTCGCTTCTTGTGCTGTGTGCCGTATCTATGGTACAT
CAGGTGGGTGTGGGAAAGTGGTAAACAATTTGTCGAGTGTGCGCGCGCCG
TCCTACATACAGGCGAGTGTAATGTATTTCGGATTTCTTGCGTGTGTGCA
ATCTCAGACCGCGCACATTCGTGGCTTGGCAGGCAGGGCTCGGGAGAAAA
ATTCCTTCGTCAGCGGTTGCTAGGTTGTCTCTCGGCGACGACGGTATCGC
CGTGCTTCCCTCGCGTCGGTCAGCGTGCCGCACAGGCTACTTGCTCTGCG
CACCCGACCGTGCGCACCGTATCACAACTGTCTCCTTCCAACATAATCGC
GGCCCACGGCACACGAGCGTCCCCCCTTCTTTAAAAGTTGCAATCGCCTT
GTGTAGTTTGGTGCGCGTGCCGTGTCGATTGCTGCAGCGCCTTGCCGCCT
GACCCATATCGGTCCCCCCCCCCCCCCACGCCGAAACATTGAACATTGCT
CTGGAAGCCAAGGGCGTGGTTGGCGCGGAAGTCGGCGTTGTTGTCGCACG
CTATGCTGTCGATGCGGGTGTACGACTATTTAGTGGCCGAGCGAGAGCAT
GCGGCTGTCGTCACAGTTTTGTTTTCAACCTTTCCGCTCTCCCGTGTTGT
TGAGAAAAATTAGTGTTTTTGAAACCGTCGCCACCATCGTCGCGCTGTTC
CAAGTAACCGGGATGTTGACATTCCCTCGCCCTCGCCGCTCGACAACGCT
ACCAGCACACGCTGTCCAAGCTGCTGCCCGTGTTCCGGGATATGGTGTCT
GAGTACCCCGACACGGCCTTCCCTGGTGAGACGAAGAGCCACTTTTGTGT
TTCGATCGGACGTCGGCTGTAGCAGAGCACACCCGCCTGCCCGGCGACTT
GGTTGTGTGAGATAGATCGTAGGATGCTCATTATCGAGCGTTACGCGATT
GTACATACAAACTACCGTCTGCCTGTCTGTATCGACACAGTGCGGTATGT
CTCCATCGTCTACGAATAAGAGCGTTGAAGCAGCATACCCTATGGATGTA
TCGCCTGCGTCGTGTTTTACGCAGGGGAGGCCGGCCAAAAGACGCAGGTG
GCGATATCGAACCTGTGCTACCACGGCAAATTTCGGGCCGACGCGGTCAT
GAAGAAGAAGCCAATCAAGGCGAAAGGTACCTCCGGCAGGACGTACACAT
TTGCCATGGCGGCGCCGGTGGGTCTGGGCGACGAGAAAAAATTTTCTAAG
GCCCGCACTAGCCTTTTGGAGGGTGCCTTTATCCCGAGGTATGCTGAAGG
GCGGCGGTGGGCGGGTGGGCTACGCGCGCGGCTGTACTGTATCTGCGCGT
GCGAAAGCGTTCGTGTGACGCAGAATTTTTTTGTCGAAGGTGTTGCGGTG
TCGCGCCAACGTTCCCTACATTTCGCGTTACCTGGTATCGTGGTGGTATT
CGAGATTTTATTACCGCTGGCTTTGCTCCGTGGCTTTCCGCGATGGAGTT
CGTATTGCCGATCGTGTGCGATACGGCGCCGGTGTAAAAAGCACCCCGCC
GCTTGCATCGTCCGGAGAAGTAGCGCAGCAAGCGGCGGAGTTTTAGTGAG
GTCACGAACAATACACCGGTGGTGTTATACGATAGTTATTTCCTACGACC
TTTGTCGCTCGTTCTGAGGCAAGCCTGAACAACCTCGCTCAAGTTGTTAG
CCTCCTCTCTGACACCGTGACGACGCTCTCGTGTCGCGATACCACCGCAC
CTGATAGAACCGCGACGCCGTTTTTTTCTAATTTCCCCCCTCGCCTCGCG
TTGCCGTGGGTGTGTTCTCCGTAAGGCTGGTAGAACTTGCGAACAAGCAC
TTCCCGGAAGAGATAAACAGCAACAAGCGAATCGCCGAGGTAGTGGACTT
GAGACATCCTCAGCACTGGTTCCCGCTCGCCCGGCTGCGGAAGCGTCGCA
TCATCTACCACGGAGGTGAAGCAAGGCGCGAAATGCCCCACGGGGAACTC
GTTAAATACCCCCAACAACTCGGTATCACCTTTATTTAATACAGACAAGT
TCCGCTGAGGGGTGGATGTTTGTTTTTTAGTGTGATGTATTGGCGTTTTT
TCGCTCGCCACACTGACGCCAACGCCCCCCCAGTCAGGTGGAAGTCCTTT
GTTTAATTCCCACCGGAGTAGTAAAATATACGTTTTTATCATGTTCTCTG
CCGCGTTGAGCGCGGAAGTGTGACTAAGAAAAAAATGATATCCGGCAAGC
CGCGGGAGGGGTGAACCCAATGCGGGATAAAAGTGTGGCTCTTAGGCAAA
AACCGGAGAGGGATGGGATGGAACATAAAGGCCGATCAGCTGTTCGTGAG
CCACACGCATTTACACACCTGCCTGCTTGCCCCGTTGAGTATATATTTGT
GGCTTAAGGCTGCCTGGCTCGATTTCCCGCATCGGAGCGCGCCTTTCGCC
AATGATATTTGTCGAGGTTGGGGGTATTTTCGATGATTTTACGCATGCCC
TATTATTTTGTACTTGTGTAATGGCACCCACTTTGTCCTGTTTTGCAAGC
CCCTTTTCATGCGGGCCTCGCAGGCGTCAAGCAACTAGCCGTGCGGTCCC
TTTCTTCCCACCTCGCGGTCGCGCCGCAGATGCCCCACCTAGCGCGTACG
CACAGAGCCGGGCAGATTTTGCTGCACCGCAGCGGGTGATGATGATGATC
TTGACGATGATGATGAAGATGACTGACGATGATGGTGATCCTGGCGGTGG
TCTCACAATTCAGTCGTGCTACGTACATGCGATGTGTCACACACATGTAC
CGCACTGCCGTTCAAGCCAGCAGCGGCCCCAACCCACCGTCTAGATACCA
ACTACTGTCCCTCTCCGATGTCGCTACCCCCCCCCCCTCAATGTCGCGGA
AACCATTTCCTCGCGTTGTTCAGGGCCTACAAACTCCGGCAAGACGTACC
AGGCGATAGAGCGGTTGAAGAAAGCCGGCGCAGGTAGGAAACCCGGGGAC
GGCCCCGTCGGAATTTTCTGCGGGCCGCTGCGGCTTCTGGCTCTGGAGGT
GTACGAGCAGGTGCGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12286:965..4583-

>mRNA_S-dermatodea_contig12286.1432.1 ID=mRNA_S-dermatodea_contig12286.1432.1|Name=mRNA_S-dermatodea_contig12286.1432.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at S-dermatodea_contig12286:965..4583- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTAGGGGGGAGAGCTCAGGCGGCGGTTCAAGGGACCGCGGCGGGAAGCG
CTCGGCAGCCTCGCATTCGGAGCGTGCGGGGTCGGCGTGGAAGAACGTGC
ACGCAAGGGGGAACCTCAAGGCGCTCTTGGCGGGACTTGTGGGTGATTAC
GGCGTGCAGGAGGTGCTCAACGACCACCACGTTCACGAGGGTAGGGGGGA
GAGCTCAGGCGGCGGTTCAAGGGACCGCGGCGGGAAGCGCTCGGCAGCCT
CGCATTCGGAGCGTGCGGGGTCGGCGTGGAAGAACGTGCACGCAAGGGGG
AACCTCAAGGCGCTCTTGGCGGGACTTGTGGGTGATTACGGCGTGCAGGA
GGTGCTCAACGACCACCACGTTCACGAGCACACGCTGTCCAAGCTGCTGC
CCGTGTTCCGGGATATGGTGTCTGAGTACCCCGACACGGCCTTCCCTGCA
CACGCTGTCCAAGCTGCTGCCCGTGTTCCGGGATATGGTGTCTGAGTACC
CCGACACGGCCTTCCCTGGGGAGGCCGGCCAAAAGACGCAGGTGGCGATA
TCGAACCTGTGCTACCACGGCAAATTTCGGGCCGACGCGGTCATGAAGAA
GAAGCCAATCAAGGCGAAAGGTACCTCCGGCAGGACGTACACATTTGCCA
TGGCGGCGCCGGTGGGTCTGGGCGACGAGAAAAAATTTTCTAAGGCCCGC
ACTAGCCTTTTGGAGGGTGCCTTTATCCCGAGGGGAGGCCGGCCAAAAGA
CGCAGGTGGCGATATCGAACCTGTGCTACCACGGCAAATTTCGGGCCGAC
GCGGTCATGAAGAAGAAGCCAATCAAGGCGAAAGGTACCTCCGGCAGGAC
GTACACATTTGCCATGGCGGCGCCGGTGGGTCTGGGCGACGAGAAAAAAT
TTTCTAAGGCCCGCACTAGCCTTTTGGAGGGTGCCTTTATCCCGAGGCTG
GTAGAACTTGCGAACAAGCACTTCCCGGAAGAGATAAACAGCAACAAGCG
AATCGCCGAGGTAGTGGACTTGAGACATCCTCAGCACTGGTTCCCGCTCG
CCCGGCTGCGGAAGCGTCGCATCATCTACCACGGAGGCTGGTAGAACTTG
CGAACAAGCACTTCCCGGAAGAGATAAACAGCAACAAGCGAATCGCCGAG
GTAGTGGACTTGAGACATCCTCAGCACTGGTTCCCGCTCGCCCGGCTGCG
GAAGCGTCGCATCATCTACCACGGAGGGCCTACAAACTCCGGCAAGACGT
ACCAGGCGATAGAGCGGTTGAAGAAAGCCGGCGCAGGTAGGAAACCCGGG
GACGGCCCCGTCGGAATTTTCTGCGGGCCGCTGCGGCTTCTGGCTCTGGA
GGTGTACGAGCAGGTGCGGTAGGGCCTACAAACTCCGGCAAGACGTACCA
GGCGATAGAGCGGTTGAAGAAAGCCGGCGCAGGTAGGAAACCCGGGGACG
GCCCCGTCGGAATTTTCTGCGGGCCGCTGCGGCTTCTGGCTCTGGAGGTG
TACGAGCAGGTGCGGTAG
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