mRNA_S-dermatodea_contig12285.1431.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12285.1431.1
Unique NamemRNA_S-dermatodea_contig12285.1431.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Match: D8LEZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ4_ECTSI)

HSP 1 Score: 857 bits (2215), Expect = 4.760e-293
Identity = 509/672 (75.74%), Postives = 545/672 (81.10%), Query Frame = 1
Query:    1 VVSRHDGEGQRKLRSRGGG--DGKRTIFDARPYVKLLETIDGTTPRDERGDLLVFLSGMGDMLAVTEGVREYVEGKSPRRWVVLMLHSSLSVEEQDK-------VFDAAPLGTRKMILATNIAETSVTIDGVRFVADSGKAKEMSWDPMSGVRSLQEFWVSRASAEQRKGRAGRTGPGLCFRLYSRSTFDRLAPFAEPEIRRCPLEGLVLQMKSLGLVDPRLFPYLSPPPPENLEAALEALALLGATDVAAS----GFCGSDDTITDTDPGETLPETRRDPGNGRSSDEIPGAPSAQQPDLSPP--LPPLSRGEQGGPLSPAVAFDDATARAPLTPLGRVLSSLPVEPSVGKMLALASLFGEVEHVLTLAAALSTQTPFDARAAASASGANPVAEFASPDGDPFTVMNAYDEWIRVKAARQESSRRWCKRHGLQEQRLYEITKLRKQFEDLLSNTGLLWLGAAAQRARRXXXXXXXXXXXXXXXXXXASKDKIRELKMRRGGRKRKVLEVDHGVAGDGDAEXXXXXXXXXXXEAEDAQKDLRAEVGEGGGDGDVGLDLSSLEFYMAQDVDQLAESSGRRLARRDIAVLKAILCQGLYPHFAVADAGNAGRASNEQQYITRPSAGLFMSPSSVLACQDFGVRAGGGGTAAAPTSRSLRAVPPQM-RGEGTGCF 1968
            VVS+HDGEGQRKLRSRGGG  +GKR +FDARPYVKLLE+ID TTPRDERGDLLVFLSGM DMLAVTEGVREYVE KSPRRWVVLMLHSSLSVEEQDK       VFDA+PLGTRKMILATNIAETSVTIDGVRFV DSGKAKEMSWDP SGVRSLQEFWVSRASAEQRKGRAGRTGPG+CFRLY+RSTFDRL PFAEPEIRRCPLEGLVLQMKSLGL DPR FPYLSPPPPENL AALE+LALLGATD A++         +         E       DP  G       GAP A++   +P     P  R E     +    FDDATARAPLTPLGRVLS+LPV+PSVGKMLAL +LFGE EHVLTLAAALSTQTPFDARAAA+ASGANPVAEFAS  GDPFTVMNAYDEWIRVKAAR+ESSRRWCKRHGLQEQRLYEITKLR+QFEDLL + GL+WLGAAAQRAR XXXXXXXXXXXXXXXXXX              GRKRKVL+VD G    GDA XXXXXXXXXXX+ E+A++DLR EVGEG  DG+ GLDLSSLEFYMAQDVDQLAESSGRRLARRD+A++KAILCQGLYP FAVADAGNAGRASNEQQY+TRPS GLFMSPSSVLACQDFG+ A  GGTA    S S R       RG+G  C+
Sbjct:  561 VVSKHDGEGQRKLRSRGGGGGEGKRVMFDARPYVKLLESIDTTTPRDERGDLLVFLSGMSDMLAVTEGVREYVEAKSPRRWVVLMLHSSLSVEEQDKARDFLGLVFDASPLGTRKMILATNIAETSVTIDGVRFVCDSGKAKEMSWDPASGVRSLQEFWVSRASAEQRKGRAGRTGPGVCFRLYARSTFDRLPPFAEPEIRRCPLEGLVLQMKSLGLDDPRYFPYLSPPPPENLRAALESLALLGATDAASAVSVPAAAADEAAXXXXXXTEGAVAVGSDPRGGAGL----GAPHAERLPAAPESNAEPRRREEGTTATTTPPTFDDATARAPLTPLGRVLSALPVDPSVGKMLALGALFGESEHVLTLAAALSTQTPFDARAAAAASGANPVAEFASSHGDPFTVMNAYDEWIRVKAARKESSRRWCKRHGLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARXXXXXXXXXXXXXXXXXXXXXXXXXX-------GRKRKVLQVDGG----GDAAXXXXXXXXXXXDVEEARRDLRGEVGEGEVDGEAGLDLSSLEFYMAQDVDQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGTANGIHSSSSRGAAANAGRGDGLLCY 1217          
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Match: A0A6H5K4A6_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A6_9PHAE)

HSP 1 Score: 403 bits (1036), Expect = 6.230e-125
Identity = 241/396 (60.86%), Postives = 263/396 (66.41%), Query Frame = 1
Query:    1 VVSRHDGEGQRKLRSRGGG--DGKRTIFDARPYVKLLETIDGTTPRDERGDLLVFLSGMGDMLAVTEGVREYVEGKSPRRWVVLMLHSSLSVEEQDKVFDAAPLGTRKMILATNIAETSVTIDGVRFVADSGKAKEMSWDPMSGVRSLQEFWVSRASAEQRKGRAGRTGPGLCFRLYSRSTFDRLAPFAEPEIRRCPLEGLVLQMKSLGLVDPRLFPYLSPPPPENLEAALEALALLGATDVAAS----GFCGSDDTITDTDPGETLPETRRDPGNGRSSDEIPGAPSAQQPDLSPPLPPLSRGEQGGPLSPAVA---FDDATARAPLTPLGRVLSSLPVEPSVGKMLALASLFGEVEHVLTLAAALSTQTPFDARAAASASGANPVAEFASPDGD 1161
            VVSRHDGEGQRKLRSRGGG  +GKR +FDARP+VKLLE+ID TTPRDERGDLLVFLSGM DMLAVTEGVREYVE KSPRRWVVLMLHSSLSVEEQDK  D   L                                                        RKGRAGRTGPG+CFRLY+RSTFDRL PFAEPEIRRCPLEGLVLQMKSLGL DPR FPYLSPPPPENL AAL +LALLGATD A++                   E + E     G+        GAP A++   +P      R  + G  +  +    FDDATARAPLTPLGRVLS LPV+PSVGKMLAL +LFGE EHVLTLAAALSTQTPFD RAA++ASGANPVAEFASP G+
Sbjct:  596 VVSRHDGEGQRKLRSRGGGGGEGKRVMFDARPFVKLLESIDTTTPRDERGDLLVFLSGMSDMLAVTEGVREYVEAKSPRRWVVLMLHSSLSVEEQDKARDFLGL--------------------------------------------------------RKGRAGRTGPGVCFRLYARSTFDRLPPFAEPEIRRCPLEGLVLQMKSLGLDDPRFFPYLSPPPPENLRAALGSLALLGATDPASAVSVPAAAADXXXXXXXXXXEAITEGAVAAGSDLRGGAGLGAPHAERLPAAPESNAEPRRREQGTTAATITPPTFDDATARAPLTPLGRVLSKLPVDPSVGKMLALGALFGESEHVLTLAAALSTQTPFDTRAASAASGANPVAEFASPHGE 935          
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Match: A0A7K7LCV4_9AVES (DHX34 helicase (Fragment) n=3 Tax=Anatinae TaxID=2068716 RepID=A0A7K7LCV4_9AVES)

HSP 1 Score: 394 bits (1011), Expect = 6.160e-123
Identity = 247/600 (41.17%), Postives = 321/600 (53.50%), Query Frame = 1
Query:   61 GKRTIFDARPYVKLLETIDGTTPRDERGDLLVFLSGMGDMLAVTEGVREYVEGKSPRRWVVLMLHSSLSVEEQDKVFDAAPLGTRKMILATNIAETSVTIDGVRFVADSGKAKEMSWDPMSGVRSLQEFWVSRASAEQRKGRAGRTGPGLCFRLYSRSTFDRLAPFAEPEIRRCPLEGLVLQMKSLGLVDPRLFPYLSPPPPENLEAALEALALLGATDVAASGFCGSDDTITDTDPGETLPETRRDPGNGRSSDEIPGAPSAQQPDLSPPLPPLSRGEQGGPLSPAVAFDDATARAPLTPLGRVLSSLPVEPSVGKMLALASLFGEVEHVLTLAAALSTQTPFDARAAASASGANPVAEFASPDGDPFTVMNAYDEWIRVKAARQESSRRWCKRHGLQEQRLYEITKLRKQFEDLLSNTGLLWLGAAAQRARRXXXXXXXXXXXXXXXXXXASKDKIRELKMRRGGRKRKVLEVDHGVAGDGDAEXXXXXXXXXXXEAEDAQKDLRAEVGEGGGD-GDVGLDLSSLEFYMAQDVDQLAESSGRRLARRDIAVLKAILCQGLYPHFAVADAGNAGRASNEQQYITRPSAGLFMSPSSVLA 1857
            GK    D RPY+++L+ ID   P +ERGDLLVFLSG+ ++ AV E  + Y      +RW+VL LHS+LSV EQDKVFD  P G RK ILATNIAETSVTIDGVRFV DSGK KEMS+DP   ++ LQEFW+SRASAEQRKGRAGRTGPG+C+RLY+ S +D   P+  PEI+R  L+ LVLQ+KS+GL DPR FP+L PPP  +LE A+  L   GA D A                                                                             LTP+G +L+ LPV+  VGKML L +LFG  E  LT+AAALS Q+PF   + A+   A       SP GDP T++NA++EW++VK+ R  SSR+WC+R GL+E RLYE   LR+QF++LL +  LL   AA  R                         + +       GRKRKVL +  G AG    E                      E G G  + G+  +D+  ++F +  D+D+L   SG  L+   +A+LK +LC+GLYP  AV DA N  R  ++Q + T+   G+ + PS V A
Sbjct:   16 GKPERLDPRPYLRVLQAIDHKYPPEERGDLLVFLSGVAEIGAVQEAAQVYAT--QTQRWIVLPLHSTLSVSEQDKVFDVPPPGVRKCILATNIAETSVTIDGVRFVLDSGKVKEMSYDPQGKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDYDAFPPYPVPEIQRVALDALVLQVKSMGLGDPRTFPFLEPPPSASLETAVRYLREQGALDEAEE---------------------------------------------------------------------------LTPIGTLLAQLPVDVVVGKMLVLGALFGLAEPTLTVAAALSVQSPFLRLSNANPDCATARRPLESPHGDPLTLLNAFNEWVQVKSERGGSSRKWCRRRGLEEHRLYEAANLRRQFQELLRDHRLL--EAAPSRPSDSYSRQSRHRERRELHRLWRHHTETQ-------GRKRKVLRLQDGTAGSSGEE----------------------EEGAGAREPGERSVDIQDVKFKLRHDMDELQAVSGSVLSPSQLALLKLVLCRGLYPQLAVPDALNNSRKDSDQIFHTKSKQGVVLHPSCVFA 507          
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Match: UPI001CAA3BAE (probable ATP-dependent RNA helicase DHX34 isoform X3 n=1 Tax=Chelonia mydas TaxID=8469 RepID=UPI001CAA3BAE)

HSP 1 Score: 397 bits (1019), Expect = 1.290e-122
Identity = 241/596 (40.44%), Postives = 321/596 (53.86%), Query Frame = 1
Query:   76 FDARPYVKLLETIDGTTPRDERGDLLVFLSGMGDMLAVTEGVREYVEGKSPRRWVVLMLHSSLSVEEQDKVFDAAPLGTRKMILATNIAETSVTIDGVRFVADSGKAKEMSWDPMSGVRSLQEFWVSRASAEQRKGRAGRTGPGLCFRLYSRSTFDRLAPFAEPEIRRCPLEGLVLQMKSLGLVDPRLFPYLSPPPPENLEAALEALALLGATDVAASGFCGSDDTITDTDPGETLPETRRDPGNGRSSDEIPGAPSAQQPDLSPPLPPLSRGEQGGPLSPAVAFDDATARAPLTPLGRVLSSLPVEPSVGKMLALASLFGEVEHVLTLAAALSTQTPFDARAAASASGANPVAEFASPDGDPFTVMNAYDEWIRVKAARQESSRRWCKRHGLQEQRLYEITKLRKQFEDLLSNTGLLW--LGAAAQRARRXXXXXXXXXXXXXXXXXXASKDKIRELKMRRGGRKRKVLEVDHGVAGDGDAEXXXXXXXXXXXEAEDAQKDLRAEVGEGGGDGDVGLDLSSLEFYMAQDVDQLAESSGRRLARRDIAVLKAILCQGLYPHFAVADAGNAGRASNEQQYITRPSAGLFMSPSSVLA 1857
             D RPY+++L+ ID   P +ERGDLLVFLSG+ ++ AV E  + Y      +RWVVL LHS+LS+ EQDKVFD  P G RK I++TNIAETSVTIDGVRFV DSGK KE+S+DP + ++ LQEFW+SRASAEQRKGRAGRTGPG+C+RLY+ S +D  AP+  PEI+R  L+ LVLQMKS+GL DPR FP+L PPP  +LE A+  L   GA D A S                                                                           LTP+G +L+ LPV+  +GKML L +LFG  E VLT+AAALS Q+PF      +   A       SP GDP T++N ++EW++VK+ R  SSR+WC+R GL+E RLYE   LR+QF++LL + GLL    G     AR+                      ++R+      GRKRKVL +  G AG    E                              G  G+D+  ++F +  +VD+L  +SG  L+   +A+LK +LC+GLYP  AV D  N+ R  ++Q + T+   G+ + P+ V A
Sbjct:  370 LDPRPYLRVLQAIDHKYPPEERGDLLVFLSGVAEISAVLEAAQAYAT--HTQRWVVLPLHSTLSIAEQDKVFDMPPPGVRKCIVSTNIAETSVTIDGVRFVLDSGKVKELSYDPQAKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDYDAFAPYPVPEIQRVALDALVLQMKSMGLGDPRTFPFLEPPPQSSLETAVRYLREQGALDRAES---------------------------------------------------------------------------LTPIGSLLAQLPVDVVIGKMLVLGALFGLAEPVLTVAAALSVQSPFLRPTRTNPDCATARRPLESPHGDPLTLLNTFNEWVQVKSERAGSSRKWCRRRGLEEHRLYEAANLRRQFQELLRDHGLLEPVQGPRDSYARQSRHRERRELH------------RLRQRHEETEGRKRKVLRLQEGEAGSSSDEGASRT-------------------------GPSGVDIQDVKFKLRHNVDELQAASGAALSSHQLALLKLVLCRGLYPQLAVPDQYNSCRKDSDQIFHTKNKQGIVLHPTCVFA 851          
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Match: A0A7K7BJT6_9AVES (DHX34 helicase (Fragment) n=1 Tax=Nothoprocta ornata TaxID=83376 RepID=A0A7K7BJT6_9AVES)

HSP 1 Score: 391 bits (1004), Expect = 1.560e-122
Identity = 242/601 (40.27%), Postives = 322/601 (53.58%), Query Frame = 1
Query:   61 GKRTIFDARPYVKLLETIDGTTPRDERGDLLVFLSGMGDMLAVTEGVREYVEGKSPRRWVVLMLHSSLSVEEQDKVFDAAPLGTRKMILATNIAETSVTIDGVRFVADSGKAKEMSWDPMSGVRSLQEFWVSRASAEQRKGRAGRTGPGLCFRLYSRSTFDRLAPFAEPEIRRCPLEGLVLQMKSLGLVDPRLFPYLSPPPPENLEAALEALALLGATDVAASGFCGSDDTITDTDPGETLPETRRDPGNGRSSDEIPGAPSAQQPDLSPPLPPLSRGEQGGPLSPAVAFDDATARAPLTPLGRVLSSLPVEPSVGKMLALASLFGEVEHVLTLAAALSTQTPFDARAAASASGANPVAEFASPDGDPFTVMNAYDEWIRVKAARQESSRRWCKRHGLQEQRLYEITKLRKQFEDLLSNTGLLWLGAAAQRARRXXXXXXXXXXXXXXXXXXASKDKIRELKMRRGGRKRKVLEVDHGVAGDGDAEXXXXXXXXXXXEAEDAQKDLRAEVGEGGGD--GDVGLDLSSLEFYMAQDVDQLAESSGRRLARRDIAVLKAILCQGLYPHFAVADAGNAGRASNEQQYITRPSAGLFMSPSSVLA 1857
            GK    D RP++++L+ ID   P +ERGDLLVFLSG+ ++ AV E  + Y      +RWVVL LHS+LSV EQDKVFD  P G RK IL+TNIAETSVTIDGVRFV DSGK KEMS+DP   ++ LQEFW+SRASAEQRKGRAGRTGPG+C+RLY+ S +D  +P+  PEI+R  L+ LVLQ+KS+GL DPR FP+L PPPP +LE A+  L   GA D A                                                                             LTP+G++L+ LPV+  VGK+L L +L G  E  LT+AAALS Q+PF   A  +   A       SP GDP T++N ++EW++VK+ R  +SR+WC+R GL+E RLYE   LR+QF++LL +  LL   AA+ R                      S  +         GRKRKVL +  G                       A          GG D  G+ G+D+  ++F +  DV+QL  ++G  L+   +A+L+ +LC+GLYP  A+ D  N+GR  ++Q + TR   GL + P+ V A
Sbjct:  230 GKTERLDPRPFLRVLQAIDHKYPPEERGDLLVFLSGVAEIGAVLEAAQPYAA--RTQRWVVLPLHSTLSVAEQDKVFDVPPPGVRKCILSTNIAETSVTIDGVRFVLDSGKVKEMSYDPQGKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDYDAFSPYPVPEIQRVALDVLVLQLKSMGLGDPRTFPFLEPPPPSSLETAVRYLREQGALDEAEE---------------------------------------------------------------------------LTPIGKLLAQLPVDVVVGKVLVLGALLGLAEPALTVAAALSVQSPFLRAAPGNPERATARRPLESPHGDPLTLLNVFNEWLQVKSERGGNSRKWCRRRGLEEHRLYEAANLRRQFQELLQDHQLL--EAASSRPSDSYSRQSRHRERRELHRLWRSHAETE-------GRKRKVLRLQDG-----------------------AGXXXXXXXXXGGADRRGERGIDIQDVKFKLRHDVEQLQAAAGAALSPAQLALLQLVLCRGLYPQLALPDPLNSGRKDSDQIFHTRSKQGLVLHPTCVFA 721          
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Match: A0A151MYR5_ALLMI (Putative ATP-dependent RNA helicase DHX34 isoform A n=3 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151MYR5_ALLMI)

HSP 1 Score: 392 bits (1007), Expect = 6.000e-122
Identity = 254/602 (42.19%), Postives = 334/602 (55.48%), Query Frame = 1
Query:   52 GGDGKRTIFDARPYVKLLETIDGTTPRDERGDLLVFLSGMGDMLAVTEGVREYVEGKSPRRWVVLMLHSSLSVEEQDKVFDAAPLGTRKMILATNIAETSVTIDGVRFVADSGKAKEMSWDPMSGVRSLQEFWVSRASAEQRKGRAGRTGPGLCFRLYSRSTFDRLAPFAEPEIRRCPLEGLVLQMKSLGLVDPRLFPYLSPPPPENLEAALEALALLGATDVAASGFCGSDDTITDTDPGETLPETRRDPGNGRSSDEIPGAPSAQQPDLSPPLPPLSRGEQGGPLSPAVAFDDATARAPLTPLGRVLSSLPVEPSVGKMLALASLFGEVEHVLTLAAALSTQTPFDARAAASASGANPVAEFASPDGDPFTVMNAYDEWIRVKAARQESSRRWCKRHGLQEQRLYEITKLRKQFEDLLSNTGLLWLGAAAQRARRXXXXXXXXXXXXXXXXXXASKDKIRELKMRRGGRKRKVLEVDHGVAGDGDAEXXXXXXXXXXXEAEDAQKDLRAEVGEGGGDGDVGLDLSSLEFYMAQDVDQLAESSGRRLARRDIAVLKAILCQGLYPHFAVADAGNAGRASNEQQYITRPSAGLFMSPSSVLA 1857
            G  GK+   D RPY+++L+ ID   P +ERGDLLVFLSG+ ++ AV E  + Y      +RWVVL LHS+LS+ EQDKVFD  P G RK IL+TNIAETSVTIDGVRFV DSGK KEMS+DP + ++ LQEFW+SRASAEQRKGRAGRTGPG+C+RLY+ S +D  AP+  PEI+R  L+ LVLQMKS+ L DPR FP+L PPPP +LE A+  L                                                                  EQG       A DDA     LTP+G +L+ LPV+  VGKML L  LFG  E VLT AA LS Q+PF   A A+   A       SP GDP T++N +++W++VK+ R  +SR+WC+R GL+E RLYE   LR+QF+DLL + GL+ + +A  RA                       ++         GR+RK L++  G A      XXXXXXXXX           RA            +D+  ++F +  +VD+L   SG  L+ + +A+LK +LC+GLYP  AV D+ N+ R  ++Q + TR   G+ + P+SV A
Sbjct:   43 GAGGKQERLDPRPYLRVLQAIDHKYPPEERGDLLVFLSGVAEIGAVLEAAQTYAT--HTQRWVVLPLHSTLSIAEQDKVFDLPPPGVRKCILSTNIAETSVTIDGVRFVLDSGKVKEMSYDPQAKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDYDAFAPYPVPEIQRVALDALVLQMKSMCLGDPRSFPFLEPPPPSSLETAMRYLR-----------------------------------------------------------------EQG-------ALDDAED---LTPIGSLLAQLPVDVVVGKMLVLGVLFGLAEPVLTAAALLSVQSPFLRPAHANPDCATARRPLESPHGDPLTLLNTFNQWVQVKSERSSNSRKWCRRRGLEEHRLYEAANLRRQFQDLLRDHGLVKVASA--RASDSYTRQSRHRERRELHRLWRRHEQTE-------GRRRKALKLQDGEAASSSXXXXXXXXXXX----------XRARS----------VDIQDVKFKLRHNVDELQAVSGSALSPQQLALLKLVLCRGLYPQLAVPDSFNSCRKDSDQIFHTRSKQGVVLHPTSVFA 538          
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Match: A0A7L0UPE0_CHOAC (DHX34 helicase (Fragment) n=1 Tax=Chordeiles acutipennis TaxID=118183 RepID=A0A7L0UPE0_CHOAC)

HSP 1 Score: 387 bits (995), Expect = 5.870e-121
Identity = 246/614 (40.07%), Postives = 328/614 (53.42%), Query Frame = 1
Query:   43 SRGGGDGKRTIFDARPYVKLLETIDGTTPRDERGDLLVFLSGMGDMLAVTEGVREYVEGKSPRRWVVLMLHSSLSVEEQDKVFDAAPLGTRKMILATNIAETSVTIDGVRFVADSGKAKEMSWDPMSGVRSLQEFWVSRASAEQRKGRAGRTGPGLCFRLYSRSTFDRLAPFAEPEIRRCPLEGLVLQMKSLGLVDPRLFPYLSPPPPENLEAALEALALLGATDVAASGFCGSDDTITDTDPGETLPETRRDPGNGRSSDEIPGAPSAQQPDLSPPLPPLSRGEQGGPLSPAVAFDDATARAPLTPLGRVLSSLPVEPSVGKMLALASLFGEVEHVLTLAAALSTQTPFDARAAASASGANPVAEFASPDGDPFTVMNAYDEWIR-VKAARQESSRRWCKRHGLQEQRLYEITKLRKQFEDLLSNTGLL-----WLGAAAQRARRXXXXXXXXXXXXXXXXXXASKDKIRELKMRRG---GRKRKVLEVDHGVAGDGDAEXXXXXXXXXXXEAEDAQKDLRAEVGEGGGDGDVGLDLSSLEFYMAQDVDQLAESSGRRLARRDIAVLKAILCQGLYPHFAVADAGNAGRASNEQQYITRPSAGLFMSPSSVLA 1857
            S  G  GK    D  P++++L+TID   P +ERGDLLVFLSG+ ++ AV E  + Y      +RW+VL LHS+LSV EQDKVFD  P G RK IL+TNIAETSVTIDGVRFV DSGK KEMS+DP   ++ LQEFW+SRASAEQRKGRAGRTGPG+C+RLY+ S +D  +P+  PEI+R  L+ LVLQ+KS+GL DPR FP+L PPP  +LE AL  L   GA D A                                                                             LTP+G +L+ LPV+  VGKML L +LFG VE  LT+AAALS Q+PF   A  +   A       SP GDP T++N +++W++ VK+ R  SSR+WC+R GL+E RLYE T LR+QF++LL +  LL      LG + +R  R                    + ++  L  R     GRKRKVL +  GV                     DA      E G   G G+  +D+  ++F +  +V++L   S   L+   +A+LK +LC+GLYP  AV D  N+ R  ++Q + T+   G+ + P+ + A
Sbjct:   12 STSGKPGKSERLDPLPFLRVLQTIDHKYPPEERGDLLVFLSGVAEIGAVLEAAQAYAA--RTQRWIVLPLHSTLSVTEQDKVFDVPPPGVRKCILSTNIAETSVTIDGVRFVLDSGKVKEMSYDPQGKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDYDAFSPYPVPEIQRVALDALVLQLKSMGLGDPRTFPFLEPPPSSSLETALRYLKDQGALDEAED---------------------------------------------------------------------------LTPIGNLLAQLPVDVVVGKMLVLGALFGLVEPTLTVAAALSVQSPFLRSAHPNPDCATTRRPLESPHGDPLTLLNIFNQWVQQVKSERSCSSRKWCRRRGLEEHRLYEATNLRRQFQELLRDHQLLEEASNQLGDSYRRQSRHR-----------------ERRELHRLWRRHAETEGRKRKVLRLQDGV---------------------DASSGEEEEDGGTRGKGEHSIDIQDVKFKLRHNVEELQAVSSSVLSSSQLALLKLVLCRGLYPQLAVPDQLNSSRKDSDQIFHTKNKQGVVLHPTCIFA 510          
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Match: UPI0010A93603 (probable ATP-dependent RNA helicase DHX34 isoform X2 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0010A93603)

HSP 1 Score: 394 bits (1012), Expect = 6.310e-121
Identity = 262/667 (39.28%), Postives = 354/667 (53.07%), Query Frame = 1
Query:   76 FDARPYVKLLETIDGTTPRDERGDLLVFLSGMGDMLAVTEGVREYVEGKSPRRWVVLMLHSSLSVEEQDKVFDAAPLGTRKMILATNIAETSVTIDGVRFVADSGKAKEMSWDPMSGVRSLQEFWVSRASAEQRKGRAGRTGPGLCFRLYSRSTFDRLAPFAEPEIRRCPLEGLVLQMKSLGLVDPRLFPYLSPPPPENLEAALEALALLGATDVAASGFCGSDDTITDTDPGETLPETRRDPGNGRSSDEIPGAPSAQQPDLSPPLPPLSRGEQGGPLSPAVAFDDATARAPLTPLGRVLSSLPVEPSVGKMLALASLFGEVEHVLTLAAALSTQTPFDARAAASASGANPVAEFASPDGDPFTVMNAYDEWIRVKAARQESSRRWCKRHGLQEQRLYEITKLRKQFEDLLSNTGLLWLGAAAQRARRXXXXXXXXXXXXXXXXXXASKDKIRELKMRRG---GRKRKVLEV--DHGVAGDGDAEXXXXXXXXXXXEAEDAQKDLRAEVGEGGGDGDVGLDLSSLEFYMAQDVDQL--AESSGRRLARRDIAVLKAILCQGLYPHFAVADAGNAGRASNEQQYITRPSAGLFMSPSSVLACQDFGVRAGGGGTAAAPTSRSLRAVPPQMRGEGTGCFVTAR*WRRSGRFCRRLRLSRRCKRCCCSA 2055
             D RPY+++L+ ID   P DERGDLLVFLSGM ++ AV E  + Y      +RW+VL LHS+LSV +QDKVFD AP G RK IL+TNIAETSVTIDGVRFV DSGK KEMS+DP + ++ LQEFW+SRASAEQRKGRAGRTGPG+C+RLY+ S +D  AP+  PEI+R  L+ LVLQMKS+GL DPR FP++ PPP  +LE A+  L   GA D A                                                                             LTP+G +L+ LPV+  +GKML L SLF  VE VLT+AAALS Q+PF     ++           S  GDPFT++NA++ W++VK+ R   SR+WC+R GL+EQRLYE+  LR+QF++LL + GLL    A  R                       + ++R LK R     GR+R+VL +    G +  GD               + A+ D R    EGG      +D+  ++F +   VD+L  A S+GR L+R ++A+LK +L +GLYP  A AD  N+ R  ++Q + T+   G  + P+SV A     ++ G  G AA+ +S                 + ++R W+        +   R C+ CC SA
Sbjct:  386 LDPRPYLRVLQAIDHRYPADERGDLLVFLSGMAEISAVQEAAQTYAT--HTQRWIVLPLHSTLSVADQDKVFDVAPPGVRKCILSTNIAETSVTIDGVRFVLDSGKVKEMSFDPKAKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDYDAFAPYPVPEIQRVALDALVLQMKSMGLGDPRTFPFIEPPPSSSLETAVLYLRDQGALDAAED---------------------------------------------------------------------------LTPIGNLLAQLPVDVVIGKMLILGSLFQLVEPVLTVAAALSVQSPFLRSGHSNPDCGTARKPLESSHGDPFTLLNAFNAWVQVKSERGSGSRKWCRRRGLEEQRLYEMANLRRQFKELLRDHGLL----ADSRTT--------PADSFSRQRQHRERQELRRLKRRHEEGEGRRRRVLPLPGQEGGSSSGD---------------DAAEGDPR----EGGA-----VDIQDVKFKLRHSVDELQAAASAGRDLSRDELALLKLVLARGLYPQLAAADHFNSCRKDSDQIFHTKTKQGTVLHPTSVFASNPEVLQTGAMGRAASTSS-----------------WPSSRCWKPPNHTWSTVSACRPCRLCCSSA 922          
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Match: A0A7K4JV00_GEOCA (DHX34 helicase (Fragment) n=1 Tax=Geococcyx californianus TaxID=8947 RepID=A0A7K4JV00_GEOCA)

HSP 1 Score: 385 bits (988), Expect = 7.070e-121
Identity = 242/602 (40.20%), Postives = 320/602 (53.16%), Query Frame = 1
Query:   52 GGDGKRTIFDARPYVKLLETIDGTTPRDERGDLLVFLSGMGDMLAVTEGVREYVEGKSPRRWVVLMLHSSLSVEEQDKVFDAAPLGTRKMILATNIAETSVTIDGVRFVADSGKAKEMSWDPMSGVRSLQEFWVSRASAEQRKGRAGRTGPGLCFRLYSRSTFDRLAPFAEPEIRRCPLEGLVLQMKSLGLVDPRLFPYLSPPPPENLEAALEALALLGATDVAASGFCGSDDTITDTDPGETLPETRRDPGNGRSSDEIPGAPSAQQPDLSPPLPPLSRGEQGGPLSPAVAFDDATARAPLTPLGRVLSSLPVEPSVGKMLALASLFGEVEHVLTLAAALSTQTPFDARAAASASGANPVAEFASPDGDPFTVMNAYDEWIRVKAARQESSRRWCKRHGLQEQRLYEITKLRKQFEDLLSNTGLLWLGAAAQRARRXXXXXXXXXXXXXXXXXXASKDKIRELKMRRGGRKRKVLEVDHGVAGDGDAEXXXXXXXXXXXEAEDAQKDLRAEVGEGGGDGDVGLDLSSLEFYMAQDVDQLAESSGRRLARRDIAVLKAILCQGLYPHFAVADAGNAGRASNEQQYITRPSAGLFMSPSSVLA 1857
            G  GK    D  PY+++L+ ID   P +ERGDLLVFLSG+ ++ AV E  + Y      +RW+VL LHS+LSV EQDKVFD  P G RK IL+TNIAETSVTIDGVRFV DSGK KEMS+DP   ++ LQEFW+SRASAEQRKGRAGRTGPG+C+RLY+ S +D  +P+  PEI+R  L+ LVLQ+KS+GL DPR FP+L PPP  +LE A+  L                                 RD G                                       A DDA     LTP+G +L+ LPV+  VGKML L +LFG  E  LT+AA LS Q+PF   +  +   A       SP GDP T++N ++EW++VK+ R  SSR+WC+R GL+E RLYE   LR+QF++LL +  LL    A+ +                      S  +         GRKRKVL +  G                     ED         G+G    + G+D+  ++F +  +V++L   S   L+   +AVLK +LC+GLYP  AV D  N GR  ++Q + T+   G+ + P+SV A
Sbjct:  120 GKAGKPERLDPLPYLRVLQAIDHKYPPEERGDLLVFLSGVAEIGAVLEAAQAYAA--QTQRWIVLPLHSTLSVAEQDKVFDVPPPGVRKCILSTNIAETSVTIDGVRFVLDSGKVKEMSYDPQGKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDYDAFSPYPVPEIQRVALDSLVLQLKSMGLGDPRTFPFLEPPPSSSLETAVRYL---------------------------------RDQG---------------------------------------ALDDAEE---LTPIGNLLAQLPVDVVVGKMLVLGALFGLAEPTLTVAATLSVQSPFLRSSQPNPDCATARRPLESPHGDPLTLLNIFNEWVQVKSERSGSSRKWCRRRGLEEHRLYEAANLRRQFQELLRDHRLL--EEASNQTSDSYSRQSRHRERRELHRLWRSHTETE-------GRKRKVLRLQDGA---------------DNSSGEDNDXXXXXNHGKG----ERGIDIQDVKFKLRHNVEELQAVSSSSLSSSRLAVLKLLLCRGLYPQLAVPDHLNTGRKDSDQIFHTKTKQGVVLHPTSVFA 616          
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Match: A0A8B9SIT6_ANAPL (DExH-box helicase 34 n=2 Tax=Anas TaxID=8835 RepID=A0A8B9SIT6_ANAPL)

HSP 1 Score: 399 bits (1025), Expect = 1.080e-120
Identity = 250/600 (41.67%), Postives = 322/600 (53.67%), Query Frame = 1
Query:   61 GKRTIFDARPYVKLLETIDGTTPRDERGDLLVFLSGMGDMLAVTEGVREYVEGKSPRRWVVLMLHSSLSVEEQDKVFDAAPLGTRKMILATNIAETSVTIDGVRFVADSGKAKEMSWDPMSGVRSLQEFWVSRASAEQRKGRAGRTGPGLCFRLYSRSTFDRLAPFAEPEIRRCPLEGLVLQMKSLGLVDPRLFPYLSPPPPENLEAALEALALLGATDVAASGFCGSDDTITDTDPGETLPETRRDPGNGRSSDEIPGAPSAQQPDLSPPLPPLSRGEQGGPLSPAVAFDDATARAPLTPLGRVLSSLPVEPSVGKMLALASLFGEVEHVLTLAAALSTQTPFDARAAASASGANPVAEFASPDGDPFTVMNAYDEWIRVKAARQESSRRWCKRHGLQEQRLYEITKLRKQFEDLLSNTGLLWLGAAAQRARRXXXXXXXXXXXXXXXXXXASKDKIRELKMRRGGRKRKVLEVDHGVAGDGDAEXXXXXXXXXXXEAEDAQKDLRAEVGEGGGD-GDVGLDLSSLEFYMAQDVDQLAESSGRRLARRDIAVLKAILCQGLYPHFAVADAGNAGRASNEQQYITRPSAGLFMSPSSVLA 1857
            GK    D RPY+++L+ ID   P +ERGDLLVFLSG+ ++ AV E  + Y      +RW+VL LHS+LSV EQDKVFD  P G RK ILATNIAETSVTIDGVRFV DSGK KEMS+DP   ++ LQEFW+SRASAEQRKGRAGRTGPG+C+RLY+ S +D   P+  PEI+R  L+ LVLQ+KS+GL DPR FP+L PPP  +LE A+  L   GA D A                                                                             LTP+G +L+ LPV+  VGKML L +LFG  E  LT+AAALS Q+PF   + A+   A       SP GDP T++NA++EW++VK+ R  SSR+WC+R GL+E RLYE   LR+QF++LL +  LL   AA  R                         + +       GRKRKVL +  G AG    E                      E G G  + G+ G+D+  ++F +  DVD+L   SG  L+   +A+LK +LC+GLYP  AV DA N  R  ++Q + TR   G+ + PS V A
Sbjct:  346 GKAERLDPRPYLRVLQAIDHKYPPEERGDLLVFLSGVAEISAVQEAAQVYAT--QTQRWIVLPLHSTLSVSEQDKVFDVPPPGVRKCILATNIAETSVTIDGVRFVLDSGKVKEMSYDPQGKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDYDSFPPYPVPEIQRVALDALVLQVKSMGLGDPRTFPFLEPPPSASLETAVRYLREQGALDEAEE---------------------------------------------------------------------------LTPIGTLLAQLPVDVVVGKMLVLGALFGLAEPTLTVAAALSVQSPFLRLSNANPDCATARRPLESPHGDPLTLLNAFNEWVQVKSERGGSSRKWCRRRGLEEHRLYEAANLRRQFQELLRDHRLL--EAAPNRPSDSYSRQSRHRERRELHRLWRHHTETQ-------GRKRKVLRLHDGTAGSSGEE----------------------EEGAGSREPGERGVDIQDVKFKLRHDVDELQAVSGSVLSPSQLALLKLVLCRGLYPQLAVPDALNNSRKDSDQIFHTRSKQGVVLHPSCVFA 837          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12285.1431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ4_ECTSI4.760e-29375.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4A6_9PHAE6.230e-12560.86Helicase ATP-binding domain-containing protein n=1... [more]
A0A7K7LCV4_9AVES6.160e-12341.17DHX34 helicase (Fragment) n=3 Tax=Anatinae TaxID=2... [more]
UPI001CAA3BAE1.290e-12240.44probable ATP-dependent RNA helicase DHX34 isoform ... [more]
A0A7K7BJT6_9AVES1.560e-12240.27DHX34 helicase (Fragment) n=1 Tax=Nothoprocta orna... [more]
A0A151MYR5_ALLMI6.000e-12242.19Putative ATP-dependent RNA helicase DHX34 isoform ... [more]
A0A7L0UPE0_CHOAC5.870e-12140.07DHX34 helicase (Fragment) n=1 Tax=Chordeiles acuti... [more]
UPI0010A936036.310e-12139.28probable ATP-dependent RNA helicase DHX34 isoform ... [more]
A0A7K4JV00_GEOCA7.070e-12140.20DHX34 helicase (Fragment) n=1 Tax=Geococcyx califo... [more]
A0A8B9SIT6_ANAPL1.080e-12041.67DExH-box helicase 34 n=2 Tax=Anas TaxID=8835 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12285contigS-dermatodea_contig12285:253..6316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue9.1e-10
Seed eggNOG ortholog2880.D8LEZ4
Preferred nameDHX34
KEGG koko:K20101
GOsGO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065007,GO:0070035,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000622,GO:2000623
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
Ec32 ortholog descriptionHelicase, C-terminal
Ec32 orthologEc-21_006120.1
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons7
Model size2090
Cds size108
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12285.1431.1prot_S-dermatodea_contig12285.1431.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12285 253..360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924241.134082-CDS-S-dermatodea_contig12285:252..3601622924241.134082-CDS-S-dermatodea_contig12285:252..360Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12285 253..360 -
1694079118.1827216-CDS-S-dermatodea_contig12285:252..3601694079118.1827216-CDS-S-dermatodea_contig12285:252..360Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12285 253..360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924241.145786-UTR-S-dermatodea_contig12285:360..4521622924241.145786-UTR-S-dermatodea_contig12285:360..452Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 361..452 -
1694079118.200992-UTR-S-dermatodea_contig12285:360..4521694079118.200992-UTR-S-dermatodea_contig12285:360..452Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 361..452 -
1622924241.1544342-UTR-S-dermatodea_contig12285:510..7371622924241.1544342-UTR-S-dermatodea_contig12285:510..737Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 511..737 -
1694079118.2106454-UTR-S-dermatodea_contig12285:510..7371694079118.2106454-UTR-S-dermatodea_contig12285:510..737Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 511..737 -
1622924241.164853-UTR-S-dermatodea_contig12285:1182..16891622924241.164853-UTR-S-dermatodea_contig12285:1182..1689Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 1183..1689 -
1694079118.2224064-UTR-S-dermatodea_contig12285:1182..16891694079118.2224064-UTR-S-dermatodea_contig12285:1182..1689Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 1183..1689 -
1622924241.1757853-UTR-S-dermatodea_contig12285:3050..37751622924241.1757853-UTR-S-dermatodea_contig12285:3050..3775Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 3051..3775 -
1694079118.2307043-UTR-S-dermatodea_contig12285:3050..37751694079118.2307043-UTR-S-dermatodea_contig12285:3050..3775Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 3051..3775 -
1622924241.1909978-UTR-S-dermatodea_contig12285:4598..47441622924241.1909978-UTR-S-dermatodea_contig12285:4598..4744Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 4599..4744 -
1694079118.2386012-UTR-S-dermatodea_contig12285:4598..47441694079118.2386012-UTR-S-dermatodea_contig12285:4598..4744Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 4599..4744 -
1622924241.1990535-UTR-S-dermatodea_contig12285:5519..57051622924241.1990535-UTR-S-dermatodea_contig12285:5519..5705Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 5520..5705 -
1694079118.2464087-UTR-S-dermatodea_contig12285:5519..57051694079118.2464087-UTR-S-dermatodea_contig12285:5519..5705Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 5520..5705 -
1622924241.2098987-UTR-S-dermatodea_contig12285:6217..63161622924241.2098987-UTR-S-dermatodea_contig12285:6217..6316Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 6218..6316 -
1694079118.2545002-UTR-S-dermatodea_contig12285:6217..63161694079118.2545002-UTR-S-dermatodea_contig12285:6217..6316Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12285 6218..6316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12285.1431.1

>prot_S-dermatodea_contig12285.1431.1 ID=prot_S-dermatodea_contig12285.1431.1|Name=mRNA_S-dermatodea_contig12285.1431.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=36bp
METQRPFLSSVTPLPALQALLLFSARVDTSEDASLV
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mRNA from alignment at S-dermatodea_contig12285:253..6316-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12285.1431.1 ID=mRNA_S-dermatodea_contig12285.1431.1|Name=mRNA_S-dermatodea_contig12285.1431.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6064bp|location=Sequence derived from alignment at S-dermatodea_contig12285:253..6316- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGTTTCAAGGCACGATGGGGAGGGCCAGCGGAAGCTGCGCAGCCGCGG GGGGGGGGACGGAAAGCGCACCATCTTCGACGCCCGCCCTTACGTGAAGG TCGGACGACGTTCCCTTTGTAGATAAGGGCGGATACCTGCTGATCTCGCG CGCGTATCTTCTTTCCCCGAGGGTATAAAAAATAAAAATAAACGCTTGTG TTAGTATACGATCGGTTGTACTCCATCAGAGCTGCGGGCTTTTGAAGGGC GTCTCTCTCCCCCCCCCTGCTTTGTTTTCCGAAGCCGACGTTGATTGAGC CCCCTCCTCTTTCTCCCCGCGCTTGGGTTAATACCTTATACATCTGTTAT GCATAGGTTTTCTCCGAGCAGCACTGCATACAGTAAGTTTATGTAGCTTG GTATTTATCATTTTTTTTTTCTCCCCCCCCCCCCAGCTTCTGGATATTAC TGTATCGACAGTACGAACCCAAAGGGATGAGAAGGTTGACCCTGTGCTCT CGTCTTCTCGTTTTTTGTCTTCTTCTTTCTTTTCGTTTTCCCCCTCATTT CTTCTTTTTGTCCCTCTATTTTTCCTTTTTTTTCTTTTCTTTTTTCTTTT TCTTTTCCCAGCTTCTGGAGACAATCGACGGTACGACCCCGAGGGATGAG AGGGGCGACCTTCTCGTCTTCTTGTCTGGCATGGGCGACATGCTAGCCGT CACCGAGGGCGTGCGCGAGTACGTGGAAGGGAAGAGCCCTCGCCGATGGG TGGTGCTGATGCTACATTCCAGTTTGTCGGTAGAAGAGCAGGACAAGGTG CGCGCTCTACAGGACCGCGGGCGGTGATGATGGGGCCTAACCCTAACCCT AACCCTAACCCTAACCGTAACCCCTATTCATTCATTTCATTCGTTCGTTG TCACACTTACAACCGAGCGGCCCACCAATGGTTGCCGATCCCGCTCGTGG TCAGATGAGAAAAAATCGAGAGATCGAGAAAAAAGCACCACGGAATTACT ATGATACGTTTTACGATATTTGCAGCGCTCGGCGCTCGGGGTTGCTGGCC TGATTTTTTGTGTGTGGTCGGAACTAACTCATTCGTGCATGTCGCGGCTG CGGCTTCCCCTAAAGAATGTAGTGATTTTCAAAGATAGTTGTGGTAGGTA TTAATAGTAGGTATTAACAGCCACGGCTACGCCCGTGAGGTGTGCGTTGG CAGGACGTGGTCGCTCAACTCTAAAACCAAGGTGTTTGGATTTCAACACA AAAATCAAGTTGTTTAGCCTCACTTTTTGGTGACAGAAATCGCACAGGAT TCGTGTGACAGAAGTCAACTCTTTATTAACGCTATTATATTATAGACCGG TCAAAGCGCTATTACAGTAATTAACAAAGATAAAGCGAGAGCGTTGGGAT CACCGCGGGGCCCCTCCTCCCCCCCGATGGAACTCCCCCTCGTGCGGTCT GGTGTGCGGATGTAAATTAGGGGGCCAACAACAATGTGTCATCATAAGTG CCACATGCCTGACAGGGCAGTTGTAAGTGGTGAATTTGTTCGTGGCCGCT TGTTGCGCGAACGACAATTCAGGTCTTCGATGCCGCCCCGCTGGGGACCC GCAAGATGATCCTGGCGACCAACATCGCGGAGACGAGCGTAACGATCGAT GGCGTTCGCTTTGTCGCCGACAGCGGAAAGGCCAAGGAGATGTCGTGGGA TCCTATGTCGGGCGTACGGTAAGCTCTGCCTCCAGAGGGCGGCCTTCCCT TGTTTTTTCGATAGAGGAGGCACAACGCTGCTTTGCTTCGATGTCGGTTC GCTTGACCTTCATTCAGATATACTAGTGGGTAGCCACGGCTACGCCCGTG TGAGGTGTGCGTTGGCAGGACCATATGCTGACGGAACGCGACACGGAGGT CGAACGCGGTCGAGCTACTGTGCGTGTCGCTGCTGTGCATGTCGCTGCTG GCTGTGTTTTCACTTTTATTGAAAAAAATATCGCTCAACTCAAACATCAA GTTGTTTGGCATCAGACAGCATCCTTGTCTAAAATCAATACACACAGTCT GTCATTGTTGCATTAATGAATAAGGTGCGCGCAGCCTGTGTTTGTTTTTT GCAGTCTGTTTTAATTGAGCACCACAGACGCCAGGCTGGCTGATGTGTGC TCGGCGCCGATTTTCCACAACCGGCAAACGCCTCCTTATCATACTGCGGT TATAACCTCAACGTGCCACACGCGCAACACGATCATTGCCCACCCCCCCC CCAATAAATAGAATCATTTCAAAGACATAGAGCGAGCGTTGGGGTCCCAC CTTTCAAAAGGGAAGATGGTTCAAGCTACACCTATAAGGATGCTAATTTG TTGCGTGTGATGCTATGGTTTCATGTCATGTATGATATTATATGGTTATG GTACACAAGTGTCTTTATGCTGAGCGATCCCCTACGCACCCCTCCAGCAT CTTGGCATGATACTTGTGCACAACCCAAAAGGCGACAGCGCCAAAAACAC TGAACACGCCCCTCTTTTGTTAAAAACGTGGGCCCGAACAGGTCTCTCCA AGAGTTCTGGGTGAGCCGCGCGTCCGCCGAGCAGCGCAAGGGCCGGGCGG GGAGAACGGGCCCCGGGCTGTGCTTCAGGTTGTACTCGAGGAGCACCTTC GACCGGCTCGCCCCGTTTGCCGAGCCTGAGATCCGCCGGTGCCCCCTGGA GGGCCTGGTCCTCCAGATGAAGAGCCTGGGCTTGGTAGACCCTCGCCTCT TCCCTTACCTGTCGCCGCCTCCTCCCGAGAACCTCGAAGCCGCGCTCGAG GCTCTCGCGCTCCTGGGCGCGACGGACGTCGCCGCTTCGGGTTTCTGCGG TTCTGACGACACCATCACCGATACCGACCCAGGCGAAACGCTTCCGGAAA CCCGTCGGGACCCTGGCAACGGCAGAAGCTCGGACGAGATCCCGGGTGCA CCGTCAGCGCAACAGCCGGATCTATCGCCGCCGCTGCCGCCTCTGTCGCG AGGCGAACAGGGTGGACCTTTGTCCCCGGCGGTGGCCTTCGATGACGCTA CCGCGCGAGCGCCCCTTACGCCGCTCGGTCGGGTGCTGTCGTCGCTGCCG GTGGAGCCGTCCGTCGGCAAGATGCTCGCCCTCGCGTCGCTGTTCGGGGA GGTGGAGCACGTGCTGACCCTGGCGGCGGCGCTGTCGACCCAGACGCCGT TTGACGCGAGGGCGGCGGCTTCCGCCTCGGGGGCGAACCCCGTAGCCGAG TTCGCGTCCCCCGACGGTGAGAAGCTGGCGTGGGCTGATGATGATGCTAT ACTTATAGTTTAAGTTAAACAAAAACGTTTAAAAAACAAAAGTGTCTCGT CTTGTCTTGTCTTATCTTTTACTTTGTTTTTGTCTTTTTGTTTGTTTTTG TTGTTGCCCGAGATGATCGCCTCGATCGATTCGTTTTTTGCGTTTTTGTG GGCGCAAAAAATTACCCCCATCCAAACATAATTGATGCCGTATTTTGCGC TTTCTCAACCGCGTGTGGGCACGCTTGGCCTGATCATGTGGTACGTCCTG AACTTACTGTCTGTTTTTTGTGTGTTCGAGGTCGAGATTTCGGGTCGTGG TGTCGCGTATTTTTGTAGCAAACCTGCATGTTCCACGCCGGACCGTGGGT GGGGTTTTTCATCGCTTAGATTCGCGTACAAAATACTTAGAAATACCGGA GTGCTGCGTGTGGTAACGTCCTGTGCGCTGAGGGGTCCGTTGTTGTTTTT TTTTTTTTTCGCAGGCCCAAGTTCCGAGGTATGTCCCCTCTGTTTCCGAG AGTTAGTGCCACTTCCTTTTTTGTTGTACTAATAGACTAAATAGGTAATT CCGTCGTTTTTTTCCAACCTCTCGGTTTATCATCTGACCATGAGCGGGAT CGGCAGCCATTGGCGGCGGGCACGTCGGTTGTCATTTTGTTTTGTTTGTT TTTTTGTACACATATGATAGACTTGCTTTTCCGAGGTCCGTCTGTAGTCA CGAGGAATAATCTCATCTCTCTTATTATCTTACTCCCGGTTCTCACCTTG AGTTTTTTATCGCGAATGCATTGGGTTCGGCACGCCCTTGGCTCGCCCTT TCTCGGGTTTAAATTCTTTACTCACGCTCTATTAATGGCATTAATGGCAC TTTCCGCGGCGGAGGTAAGAGACGATAAATAAATATCGACCCTGCCCGGA TTCGAACCCGGGTCCTCCGCTTCACCGAACGTTGGTGTACCAGTTCAACC ACGGGGCGCGCGGTTAAGACTCATCATTAACCCTTTTGGTACTATTAAAT TAGTGTTATATAGCAGTTTCAATACGGCCCTCCGATACGACCACAAACTA CCTCTCGATGCCAGTCGAAACCTACAGCCCCGCTTCCCTTGGTCTCCGTT CTCTCTCATTGTTGTGTCATAACCCATGGGGTTCCCCGGGACTCCGCTTC AAGCACGCCTCATTACGTGCTAACCGGCGATCCAAACAGTGTAGTGGGCT AGTACCAAAAGGGTTACAACAAAAAATCATGGACCGTTTTTCATTATCGG GAGCGCGCAACCGCGACGCTCAGCCCCTCTACATATATCCCACGTTCTCC TTCTTCCCTAAATCATCCTCCTTCCAGGGGACCCATTCACCGTGATGAAC GCCTACGACGAGTGGATTCGCGTCAAGGCCGCCCGGCAGGAATCTTCCCG GCGATGGTGCAAGCGCCACGGCCTGCAAGAGCAGCGCCTCTACGAGATAA CCAAGCTCAGGAAGCAATTCGAAGACCTCCTCAGCAACACCGGTCTCCTG TGGCTGGGCGCGGCGGCGCAGCGGGCGAGGCGAGGCCGTGGCGGGGGAGG GCGCGGAGGCGCCGCCGCCGCCGCCGGCCGCGGAGGAGCCTCGAAAGACA AAATCCGCGAGCTAAAAATGAGGCGGGGGGGAAGGAAACGCAAGGTTCTT GAGGTAGACCACGGCGTTGCGGGCGACGGAGATGCCGAGGGGGCGGGAGG TGGTCCGGGTGGGGGGGCGGACGAGGCGGAGGACGCGCAGAAGGATTTGA GGGCGGAGGTAGGGGAGGGGGGGGGCGATGGCGATGTCGGGTTGGACCTG TCCTCGCTCGAGTTTTACATGGCGCAGGACGTCGGTGAGTGGGAGGGAAA ATAACGAATGGGGTTGTTGATGACGCAGGAATATGTACTCAAGGCGCTTG GCGTTGGTGCTGGGTATGTATTGTAGCGCTTGATTCACTTATCCGCGCCT CGGGGGAGATGAAGCGCGCGTGATCTCTCTCGTGTATGTGCTGTGACTTG TGACGGTGTTGGTGCTTTTATGTGGGACACCCGCGGCGTGTTGTTAATGG CATGAGCACCCTCTGAGGAGGGCGGGTGGGCTCGACCGATACACGCGGTT ACCACCTTGTTCTCGTCACCTCTGTGTGCGGTACGTAGAGTTTCCCTTGC CGAACGCCCCCGTGTAGAAAGCCGAAACCAACAGCGTCATTGCCTCCCAA ACCCAACCCCCTACCGCTTTGCGTACTGCTCCTCGAAACCCCCTCCTTAT TTTCACTTTAACTTATCACATCCTCGCAGACCAACTCGCCGAGTCCTCAG GCCGGCGCCTCGCGCGAAGGGACATCGCCGTGCTCAAGGCCATCCTGTGC CAAGGCTTATACCCGCACTTCGCGGTCGCGGACGCAGGAAACGCAGGGCG CGCCTCGAACGAACAGCAGTACATCACTCGACCCTCCGCCGGACTGTTCA TGTCCCCCTCCTCCGTGCTCGCTTGCCAAGATTTCGGTGTCAGGGCTGGC GGGGGCGTGGCTTGGGGCGGCGGCGGTGGCGGCGGTGGCGGCGGAACGGG CTGGGGTGGTTCAGGGAACCGCGGCAGCGCCGACGTCGCGGTCGCTTCGC GCGGTGCCGCCGCAGATGCGGGGCGAGGGGACGGGCTGCTTTGTTACGGC TCGGTGATGGAGACGCAGCGGCCGTTTTTGTCGTCGGTTACGCCTCTCCC GGCGCTGCAAGCGTTGCTGCTGTTCAGCGCCAGGGTTGATACGTCCGAGG ATGCATCGCTGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12285:253..6316-

>mRNA_S-dermatodea_contig12285.1431.1 ID=mRNA_S-dermatodea_contig12285.1431.1|Name=mRNA_S-dermatodea_contig12285.1431.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig12285:253..6316- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGACGCAGCGGCCGTTTTTGTCGTCGGTTACGCCTCTCCCGGCGCT
GCAAGCGTTGCTGCTGTTCAGCGCCAGGGTTGATACGTCCGAGGATGCAT
CGCTGGTGATGGAGACGCAGCGGCCGTTTTTGTCGTCGGTTACGCCTCTC
CCGGCGCTGCAAGCGTTGCTGCTGTTCAGCGCCAGGGTTGATACGTCCGA
GGATGCATCGCTGGTG
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