mRNA_S-dermatodea_contig12281.1429.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12281.1429.1
Unique NamemRNA_S-dermatodea_contig12281.1429.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12281.1429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12281contigS-dermatodea_contig12281:6652..7219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12281.1429.1prot_S-dermatodea_contig12281.1429.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12281 6668..6985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.9867778-UTR-S-dermatodea_contig12281:6651..66671622924240.9867778-UTR-S-dermatodea_contig12281:6651..6667Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12281 6652..6667 +
1694079118.0706165-UTR-S-dermatodea_contig12281:6651..66671694079118.0706165-UTR-S-dermatodea_contig12281:6651..6667Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12281 6652..6667 +
1622924241.0092096-UTR-S-dermatodea_contig12281:6985..72191622924241.0092096-UTR-S-dermatodea_contig12281:6985..7219Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12281 6986..7219 +
1694079118.086763-UTR-S-dermatodea_contig12281:6985..72191694079118.086763-UTR-S-dermatodea_contig12281:6985..7219Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12281 6986..7219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.9987476-CDS-S-dermatodea_contig12281:6667..69851622924240.9987476-CDS-S-dermatodea_contig12281:6667..6985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12281 6668..6985 +
1694079118.0783567-CDS-S-dermatodea_contig12281:6667..69851694079118.0783567-CDS-S-dermatodea_contig12281:6667..6985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12281 6668..6985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12281.1429.1

>prot_S-dermatodea_contig12281.1429.1 ID=prot_S-dermatodea_contig12281.1429.1|Name=mRNA_S-dermatodea_contig12281.1429.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
MSYRDGHKRDKDHASQRCRDGAICRVFGSPARLRFTRMVPAALAIIFAFA
TPNDMPWVNRTTGQPNVEHSAGVTILPRTAKGLYLVISVRTHKRRPYTTY
TAVDV*
back to top

mRNA from alignment at S-dermatodea_contig12281:6652..7219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12281.1429.1 ID=mRNA_S-dermatodea_contig12281.1429.1|Name=mRNA_S-dermatodea_contig12281.1429.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=568bp|location=Sequence derived from alignment at S-dermatodea_contig12281:6652..7219+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACTTCTGTTAAACGCATGTCGTATCGAGACGGACATAAGAGAGACAAAG
ACCACGCATCCCAACGATGCCGGGACGGAGCGATCTGCCGGGTTTTCGGT
TCGCCGGCCAGGCTGCGTTTCACAAGGATGGTGCCAGCCGCTTTAGCCAT
CATATTTGCGTTTGCGACGCCAAACGATATGCCATGGGTTAATAGGACTA
CCGGGCAACCAAATGTCGAACATTCAGCAGGCGTGACTATCCTCCCAAGG
ACCGCAAAGGGACTTTACCTTGTGATCTCCGTGCGAACACACAAGCGCCG
CCCGTACACAACATACACTGCGGTAGATGTGTGATACACTTAGACTATAA
TCAGCTCATGAGTACTCCTGGCGGAGTGCTACTCATAAGTCAATGGTTGC
TCTAGGGCGTTCCAACATCCAATGTTCAGCAGGGGTTCTATAGGATGTGA
TGCGTGTCAAACCTTTGGGGAAAGACAAGACTCTTCGATCAACGTCTATG
AGCTCGCAGGATACACTGCATGAACCATCCCATTGGGGGGGGGGGGGGGT
CCTTATGTGAACCGAATG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12281:6652..7219+

>mRNA_S-dermatodea_contig12281.1429.1 ID=mRNA_S-dermatodea_contig12281.1429.1|Name=mRNA_S-dermatodea_contig12281.1429.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig12281:6652..7219+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGTATCGAGACGGACATAAGAGAGACAAAGACCACGCATCCCAACG
ATGCCGGGACGGAGCGATCTGCCGGGTTTTCGGTTCGCCGGCCAGGCTGC
GTTTCACAAGGATGGTGCCAGCCGCTTTAGCCATCATATTTGCGTTTGCG
ACGCCAAACGATATGCCATGGGTTAATAGGACTACCGGGCAACCAAATGT
CGAACATTCAGCAGGCGTGACTATCCTCCCAAGGACCGCAAAGGGACTTT
ACCTTGTGATCTCCGTGCGAACACACAAGCGCCGCCCGTACACAACATAC
ACTGCGGTAGATGTGTGAATGTCGTATCGAGACGGACATAAGAGAGACAA
AGACCACGCATCCCAACGATGCCGGGACGGAGCGATCTGCCGGGTTTTCG
GTTCGCCGGCCAGGCTGCGTTTCACAAGGATGGTGCCAGCCGCTTTAGCC
ATCATATTTGCGTTTGCGACGCCAAACGATATGCCATGGGTTAATAGGAC
TACCGGGCAACCAAATGTCGAACATTCAGCAGGCGTGACTATCCTCCCAA
GGACCGCAAAGGGACTTTACCTTGTGATCTCCGTGCGAACACACAAGCGC
CGCCCGTACACAACATACACTGCGGTAGATGTGTGA
back to top