mRNA_S-dermatodea_contig1228.1428.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1228.1428.1
Unique NamemRNA_S-dermatodea_contig1228.1428.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Match: D7FIP7_ECTSI (N-acetylglucosaminylphosphatidylinositol deacetylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP7_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 3.620e-113
Identity = 166/239 (69.46%), Postives = 190/239 (79.50%), Query Frame = 1 
Query:    7 AATPSLPLGGRVGVVIAHPDDESMFFAPTLTAVKSRGERAFVLCLSSGDFYGLGETRKRELVKACAVLGVNQDDVIIIEHPELQDGSSTPWPTEVVASHVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVALHLRIR------------NNSTGDSTPLEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWGAVFVSFNMRTAWRAMAAHRSQFVWYRRLFVVFSRYAYVNTFDRL 687
            AATPS  L G VGVVIAHPDDESMFFAPTLT +  RG+RA VLCLSSGDFYGLG+TRKRELVKAC VLGV +DDV++IEHP+LQDGS+  WP +VV+SHV DFV K GI T+ TFD+ GVSGHSDHTAV+RGVAL LR R            + S+  S+ L+AFALV+TG+LRKYSG+LD+PWS ATS  PP GA F S + R AW AMAAH SQFVWYRRLFV+FSRYAYVNTF R+
Sbjct:    2 AATPSYALRGTVGVVIAHPDDESMFFAPTLTTLGRRGQRAAVLCLSSGDFYGLGQTRKRELVKACGVLGVEEDDVVVIEHPKLQDGSTEAWPADVVSSHVHDFVQKFGIQTILTFDEGGVSGHSDHTAVNRGVALFLRTRAVTRHTASIAEGSGSSSSSSTLDAFALVTTGILRKYSGMLDMPWSLATSYGPPLGAFFSSCSARIAWAAMAAHHSQFVWYRRLFVIFSRYAYVNTFIRM 240
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BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Match: A0A6I9SBQ7_ELAGV (N-acetylglucosaminylphosphatidylinositol deacetylase n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9SBQ7_ELAGV)

HSP 1 Score: 186 bits (471), Expect = 5.300e-55
Identity = 95/219 (43.38%), Postives = 139/219 (63.47%), Query Frame = 1 
Query:   37 RVGVVIAHPDDESMFFAPTLTAVKSRGERAFVLCLSSGDFYGLGETRKRELVKACAVLGVNQDDVIIIEHPELQDGSSTPWPTEVVASHVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVALHLRIRNNSTGDSTPLEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWGAVFVSFNM--RTAWRAMAAHRSQFVWYRRLFVVFSRYAYVNTFDRL 687
             V +V+AHPDDESMFFAPT+  + S G    +LC+S+G+  G+G  RK EL +ACAVL +    V I++HP+LQDG +  W  +++++ + D +    ID+L TFD  GVSGH +H AV  G+ + L     S      +EA+ L+ST +LRKYSG +D+  S   SL  P   ++   N   R ++RAMA H SQ++W+R+LFV+FS Y Y+NT  ++
Sbjct:   45 NVLLVVAHPDDESMFFAPTILFLTSEGHNPHILCMSTGNAEGVGNVRKEELYRACAVLKIPLQQVKILDHPDLQDGFNNQWDHKLLSTIIEDEIKMWDIDSLITFDKFGVSGHPNHRAVHHGICMLL-----SDNSKRNIEAWELISTNILRKYSGPVDIWLSILCSLSNPGRQMYCIPNSLPRKSYRAMAEHESQWIWFRKLFVLFSNYTYMNTLRKI 258
[Close]
BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Match: A0A833SKT1_PHYIN (N-acetylglucosaminylphosphatidylinositol deacetylase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SKT1_PHYIN)

HSP 1 Score: 185 bits (469), Expect = 3.440e-54
Identity = 106/226 (46.90%), Postives = 143/226 (63.27%), Query Frame = 1 
Query:   46 VVIAHPDDESMFFAPTLTAVKSRGE------RAFVLCLSSGDFYGLGETRKRELVKACAV-LGVNQDDVIIIEHPELQDGSSTPWPTEVVASHVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVALHLRIRN---NSTGDSTPLEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWGA-----VFVSFNMRTAWRAMAAHRSQFVWYRRLFVVFSRYAYVNTF 678
            +V AHPDDESMFF P + +++ + E      +  +LCLS G+F GLG+ R +EL KACA  +G++ D V ++E P+LQDG    W  E +A+ V D+++K  ID +FTFDD GVSGH++H A   GV   +R +    N+  D+  +  +AL ST MLRKY G+LD   SF  S P          +FV F  R  + AMA H+SQFVWYRRLFVVFSRY ++NTF
Sbjct:   59 IVTAHPDDESMFFLPLVYSLQQQQEGSNEVWKTHLLCLSRGNFDGLGDVRVKEL-KACATYIGLSTDHVKVLEDPKLQDGMKNQWDVEHIAAIVTDYIVKNQIDAVFTFDDYGVSGHNNHIATHYGVKQAIREQQEKCNAAKDTRIVRGWALESTNMLRKYVGVLDTALSFWDSRPKHEEQTERQFIFV-FRPRWNYNAMALHQSQFVWYRRLFVVFSRYTFINTF 282
[Close]
BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Match: E1Z3W5_CHLVA (N-acetylglucosaminylphosphatidylinositol deacetylase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z3W5_CHLVA)

HSP 1 Score: 181 bits (458), Expect = 1.750e-53
Identity = 95/220 (43.18%), Postives = 131/220 (59.55%), Query Frame = 1 
Query:   49 VIAHPDDESMFFAPTLTAVKSRGERAFVLCLSSGDFYGLGETRKRELVKACAVLGVNQDDVIIIEHPELQDGSSTPWPTEVVASHVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVALHLRIRNNSTGDSTPLEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWG--------AVFVSFNMRTAWRAMAAHRSQFVWYRRLFVVFSRYAYVNTFDR 684
            V AHPDDESMFFAP +  +  +G +  +LCLS+G+ +GLG+ R +EL  AC++LG+  DD+++++ P L DG    WP  VVA+HV   V +     ++TFD  GVSGH +H A   GV        +S+  S   E + L + G+ RKY  LL++P S   +L   W          + V    R AWRA+ AHRSQ VWYRRL++V SRY Y+NTF R
Sbjct:    5 VTAHPDDESMFFAPAILRLVEQGLQVVLLCLSTGNAHGLGQLRSQELRHACSLLGIEADDIVLVDDPSLPDGMLQQWPPAVVATHVAQAVRRFKPQQVYTFDAGGVSGHPNHLATCAGVLRWWTGTPSSSSLSNLPELWQLETVGLPRKYLALLEVPLSHLLTLLRRWQKPHPQKSLCIVVRARPRQAWRALLAHRSQMVWYRRLWLVMSRYMYINTFVR 224
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BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Match: A0A836C9C4_9STRA (N-acetylglucosaminylphosphatidylinositol deacetylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9C4_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.040e-53
Identity = 100/216 (46.30%), Postives = 131/216 (60.65%), Query Frame = 1 
Query:   37 RVGVVIAHPDDESMFFAPTLTAVKSRGER--AFVLCLSSGDFYGLGETRKRELVKACAVLGVNQDDVIIIEHPELQDGSSTPWPTEVVASHVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVALHLRIRNNSTGDSTPLEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWGAVFVSFNMRTAWRAMAAHRSQFVWYRRLFVVFSRYAYVNTF 678
            R G+VIAHPDDE+MFF PTL A+          VLCLS+G+F GLG+ R +EL+ +C+  G++ D+V ++    LQDG    WP E VA +V  FV +  ID L TFD  GVSGH +H AV RGV   L      T  +     + L S  + RKY G+LD+  ++ + L        VS + R  W AMAAHRSQ VW+RRLF++FSRY YVNT+
Sbjct:   11 RPGLVIAHPDDEAMFFGPTLKALGGASPSIVVHVLCLSTGNFCGLGKLRHQELLLSCSRFGISMDNVEVVNDAALQDGKDECWPAEAVARYVGSFVQRRSIDLLLTFDQHGVSGHPNHIAVCRGVTTLLH-----TCKARLPPVYVLQSVSLARKYIGVLDVLGTWQSRLHR-----CVSLDPRQIWCAMAAHRSQLVWFRRLFMLFSRYTYVNTY 216
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BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Match: A0A1R3GG98_COCAP (N-acetylglucosaminylphosphatidylinositol deacetylase n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GG98_COCAP)

HSP 1 Score: 181 bits (459), Expect = 3.210e-53
Identity = 102/221 (46.15%), Postives = 138/221 (62.44%), Query Frame = 1 
Query:   37 RVGVVIAHPDDESMFFAPTLTAVKSRGERAFVLCLSSGDFYGLGETRKRELVKACAVLGVNQDDVIIIEHPELQDGSSTPWPTEVVASHVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVALHLRIRNNSTGDSTP--LEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWGAV--FVSFNMRTAWRAMAAHRSQFVWYRRLFVVFSRYAYVNTFDRL 687
             V +V+AHPDDESMFF+PT++ + SRG   ++LCLS G+  GLG  RK EL +ACAV  V    V +++HP+LQDG    W  +++A  + + V   GID L TFD  G+SGH +H  V  GV   L        DS+P  +EA+ LVS  +LRKYSG LD+  S   S+  P G V   +S + R ++ AMA H SQ+VW+R+LFV FS Y YVNT  ++
Sbjct:   44 NVLLVVAHPDDESMFFSPTISYLTSRGHNLYLLCLSVGNADGLGSIRKDELYRACAVHKVQLQQVQVLDHPDLQDGFGLVWNHDLLAKIIAEEVDSHGIDALITFDSYGISGHCNHRDVHYGVRKFLL-------DSSPRNIEAWELVSINILRKYSGPLDIWLSNLESMRHPRGTVHWLLSEHPRKSFLAMAQHSSQWVWFRKLFVAFSSYTYVNTLRKI 257
[Close]
BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Match: A0A2D4CGD1_PYTIN (N-acetylglucosaminylphosphatidylinositol deacetylase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGD1_PYTIN)

HSP 1 Score: 181 bits (459), Expect = 8.250e-53
Identity = 106/222 (47.75%), Postives = 140/222 (63.06%), Query Frame = 1 
Query:   37 RVGVVIAHPDDESMFFAPTLTAVKSRGE-RAFVLCLSSGDFYGLGETRKRELVKACAVLGVNQDDVIIIEHPELQDGSSTPWPTEVVASHVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVALHLRIRNN--STGDSTPLEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWGA---VFVSFNMRT--AWRAMAAHRSQFVWYRRLFVVFSRYAYVNTF 678
            R  +V AHPDDESMFF P L ++ ++ +    VLCLS G+F GLG+ R+RE++   A LG+  D V ++E P+LQDG    W  + +AS V  ++    ID +FTFDD GVSGH++H AV  GVA  +R  +   +TG   P+  + L ST ++RKY GLLD    F    P P  A   +FV F +R    +RAMA H SQFVWYRRLFVVFSRY ++NTF
Sbjct:   56 RALLVTAHPDDESMFFVPLLRSLTTQRDWDVHVLCLSRGNFDGLGDIREREMMACGAFLGLKSDRVHVLEDPQLQDGMQETWDHDHIASLVHKYIQDHSIDAVFTFDDYGVSGHANHIAVHHGVAKAVRAHHLQCNTGRGRPVRGWMLESTNIVRKYIGLLDALVHF----PSPTAASERMFV-FLVRPWYNYRAMALHHSQFVWYRRLFVVFSRYTFINTF 272
[Close]
BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Match: UPI0009E5A6CE (probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase isoform X1 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E5A6CE)

HSP 1 Score: 179 bits (455), Expect = 1.570e-52
Identity = 95/221 (42.99%), Postives = 138/221 (62.44%), Query Frame = 1 
Query:   37 RVGVVIAHPDDESMFFAPTLTAVKSRGERAFVLCLSSGDFYGLGETRKRELVKACAVLGVNQDDVIIIEHPELQDGSSTPWPTEVVASHVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVA--LHLRIRNNSTGDSTPLEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWGAVFVSFNMRT--AWRAMAAHRSQFVWYRRLFVVFSRYAYVNTFDRL 687
             V +V+AHPDDESMFFAPT+  + S G   ++LC+S+G+  G G  RK EL +ACA L V    + I++HP+LQDG   PW  +++A+ V + + K  ID L +FD+ GVSGH +H  V  G+   LH  +  N       +EA+ L+ST ++RKY G +D+  S  +SL    G++    N+     ++AMA H SQ++W+R+LFVV SRY YVNT  R+
Sbjct:   50 NVLLVVAHPDDESMFFAPTILYLTSNGLNLYILCISNGNAEGKGNIRKEELYRACATLKVPLQQIKIVDHPDLQDGFGKPWSHQLLATFVEEEIKKHCIDVLISFDNYGVSGHPNHRDVHNGICIFLHKNVEIN-------IEAWELISTNIIRKYIGPVDIWISLLSSLSGQNGSICCMPNLHPLKCYQAMAEHYSQWLWFRKLFVVLSRYTYVNTLRRI 263
[Close]
BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Match: A0A7J7Q5V9_9CHLO (N-acetylglucosaminylphosphatidylinositol deacetylase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q5V9_9CHLO)

HSP 1 Score: 178 bits (452), Expect = 1.680e-52
Identity = 100/212 (47.17%), Postives = 128/212 (60.38%), Query Frame = 1 
Query:   37 RVGVVIAHPDDESMFFAPTLTAVKSRGERAFVLCLSSGDFYGLGETRKRELVKACAVLGVNQDDVIIIEHPELQDGSSTPWPTEVVASHVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVALHLRIRNNSTGDSTPLEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWGAVFVSFNMRTAWRAMAAHRSQFVWYRRLFVVFSRYAYVN 672
            R  +VIAHPDDESMFFAPTL  + ++G    +LCLS+GD  GLG  R++EL+ AC VL +   +V I+ HP+LQDG +  WP E VA  V   + +   DT+FTFD  GVSGH +H  V  GV L L  +    G       + LVS  +L KY  LL  P S    L  P  A+  S  +  + RAMAAH+SQ+VWYR+LFV+ S Y YVN
Sbjct:   18 RALLVIAHPDDESMFFAPTLHVLHNQGAVVRILCLSNGDGDGLGVIREKELLAACRVLQIPTQNVTIVNHPQLQDGMARAWPAEAVAHQVEQQLKQHPCDTVFTFDAHGVSGHLNHRGVHHGVRLLLESQGRQLGVQA---GWQLVSERLLHKYGCLLSAPLS--ALLLRPGQALVTSARVWASVRAMAAHKSQWVWYRKLFVMLSSYTYVN 224
[Close]
BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Match: A0A061DK83_THECC (N-acetylglucosaminylphosphatidylinositol deacetylase n=7 Tax=Malvaceae TaxID=3629 RepID=A0A061DK83_THECC)

HSP 1 Score: 179 bits (453), Expect = 2.570e-52
Identity = 100/221 (45.25%), Postives = 135/221 (61.09%), Query Frame = 1 
Query:   37 RVGVVIAHPDDESMFFAPTLTAVKSRGERAFVLCLSSGDFYGLGETRKRELVKACAVLGVNQDDVIIIEHPELQDGSSTPWPTEVVASHVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVALHLRIRNNSTGDSTP--LEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWGAVFVSFN--MRTAWRAMAAHRSQFVWYRRLFVVFSRYAYVNTFDRL 687
             V +V+AHPDDESMFF+PT++ + SRG   ++LCLS G+  G+G  RK EL +ACAV  V    V + +HP+LQDG    W  +++A  + +     GID L TFD  GVSGH +H  V  GV   L        DS+P  +EA+ LVS  +LRKYSG LD+  S   S+  P G +    N  +R ++ AMA H SQ+VW+R+LFV FS Y YVNT  ++
Sbjct:   44 NVLLVVAHPDDESMFFSPTISYLTSRGHNLYLLCLSVGNADGIGSIRKDELYRACAVHKVQLQQVKVFDHPDLQDGFGHVWNHDLLAKIIEEEAYSHGIDVLITFDSYGVSGHCNHGDVHYGVRKFLH-------DSSPRNIEAWELVSINILRKYSGPLDIWLSNLDSMRHPRGVMHCLLNEHLRKSFLAMAQHSSQWVWFRKLFVSFSSYTYVNTLRKM 257
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1228.1428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIP7_ECTSI3.620e-11369.46N-acetylglucosaminylphosphatidylinositol deacetyla... [more]
A0A6I9SBQ7_ELAGV5.300e-5543.38N-acetylglucosaminylphosphatidylinositol deacetyla... [more]
A0A833SKT1_PHYIN3.440e-5446.90N-acetylglucosaminylphosphatidylinositol deacetyla... [more]
E1Z3W5_CHLVA1.750e-5343.18N-acetylglucosaminylphosphatidylinositol deacetyla... [more]
A0A836C9C4_9STRA2.040e-5346.30N-acetylglucosaminylphosphatidylinositol deacetyla... [more]
A0A1R3GG98_COCAP3.210e-5346.15N-acetylglucosaminylphosphatidylinositol deacetyla... [more]
A0A2D4CGD1_PYTIN8.250e-5347.75N-acetylglucosaminylphosphatidylinositol deacetyla... [more]
UPI0009E5A6CE1.570e-5242.99probable N-acetylglucosaminyl-phosphatidylinositol... [more]
A0A7J7Q5V9_9CHLO1.680e-5247.17N-acetylglucosaminylphosphatidylinositol deacetyla... [more]
A0A061DK83_THECC2.570e-5245.25N-acetylglucosaminylphosphatidylinositol deacetyla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1228contigS-dermatodea_contig1228:14195..20296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.1
Seed ortholog evalue2.6e-89
Seed eggNOG ortholog2880.D7FIP7
Preferred namePIGL
KEGG koko:K03434
KEGG ReactionR05917
KEGG Pathwayko00563,ko01100,map00563,map01100
KEGG ModuleM00065
GOsGO:0000225,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016254,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019538,GO:0019637,GO:0031224,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.N-acetylglucosaminylphosphatidylinositol deacetylase activity
EggNOG OGsCOG2120@1,KOG3332@2759
EC3.5.1.89
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutative deacetylase LmbE-like domain
Ec32 orthologEc-27_000570.1
Exons4
Model size705
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1228.1428.1prot_S-dermatodea_contig1228.1428.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1228 14195..20296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.9162552-CDS-S-dermatodea_contig1228:14194..145601622924240.9162552-CDS-S-dermatodea_contig1228:14194..14560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1228 14195..14560 -
1694079118.0288072-CDS-S-dermatodea_contig1228:14194..145601694079118.0288072-CDS-S-dermatodea_contig1228:14194..14560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1228 14195..14560 -
1622924240.9272523-CDS-S-dermatodea_contig1228:15046..151631622924240.9272523-CDS-S-dermatodea_contig1228:15046..15163Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1228 15047..15163 -
1694079118.0412846-CDS-S-dermatodea_contig1228:15046..151631694079118.0412846-CDS-S-dermatodea_contig1228:15046..15163Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1228 15047..15163 -
1622924240.9417503-CDS-S-dermatodea_contig1228:15332..154061622924240.9417503-CDS-S-dermatodea_contig1228:15332..15406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1228 15333..15406 -
1694079118.0502882-CDS-S-dermatodea_contig1228:15332..154061694079118.0502882-CDS-S-dermatodea_contig1228:15332..15406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1228 15333..15406 -
1622924240.953077-CDS-S-dermatodea_contig1228:20148..202961622924240.953077-CDS-S-dermatodea_contig1228:20148..20296Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1228 20149..20296 -
1694079118.0629604-CDS-S-dermatodea_contig1228:20148..202961694079118.0629604-CDS-S-dermatodea_contig1228:20148..20296Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1228 20149..20296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1228.1428.1

>prot_S-dermatodea_contig1228.1428.1 ID=prot_S-dermatodea_contig1228.1428.1|Name=mRNA_S-dermatodea_contig1228.1428.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=235bp
MAAATPSLPLGGRVGVVIAHPDDESMFFAPTLTAVKSRGERAFVLCLSSG
DFYGLGETRKRELVKACAVLGVNQDDVIIIEHPELQDGSSTPWPTEVVAS
HVRDFVIKCGIDTLFTFDDRGVSGHSDHTAVSRGVALHLRIRNNSTGDST
PLEAFALVSTGMLRKYSGLLDLPWSFATSLPPPWGAVFVSFNMRTAWRAM
AAHRSQFVWYRRLFVVFSRYAYVNTFDRLCAATR*
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mRNA from alignment at S-dermatodea_contig1228:14195..20296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1228.1428.1 ID=mRNA_S-dermatodea_contig1228.1428.1|Name=mRNA_S-dermatodea_contig1228.1428.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6102bp|location=Sequence derived from alignment at S-dermatodea_contig1228:14195..20296- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGCAGCGACTCCGTCACTTCCGTTGGGAGGCAGGGTCGGGGTGGT
GATCGCGCACCCGGACGATGAGAGCATGTTCTTCGCGCCTACGCTGACTG
CAGTCAAGAGTCGCGGGGAGCGGGCTTTCGTGCTCTGCTTGTCTTCAGGT
AAACGAAACCTAAACCTGAACTTGTTGAGCTTTTGCCGAATTTTGGTCCG
GTTCTTGCCCTTCGGTTGATTTTACGTGTGTTTTGTACGCACTGCCTGGT
GCTTCTATCGTAACACGCAGTATGCACGTAATGCACAGCCTCGCAGTGTA
CTTGTAGTGTTGGATGACATTTGAATACTCAACGAACGTCACTATGATAC
TGGAAGCCACCCCGTTGTTGCAGACCAATTCGTCGAGCTGGCTGTGAGCC
GTCGGGACTTGGGCTTGATCACACAGCTCGGTTGGATCACCCTCCCTCTC
AGCCGCTTGGTAATTGCAGTATTTTGTATTTGTTTTTCGTCTCAAAATGG
ATCCATCTGCCTCTTGGAGGTCCCTCTCCGTACAAGTGCTTCCTGCTTTG
AGACTTCAAGTGTGTGACGTCATGGGCTCTGTAGGGAGCCCCGCAGGTTT
ATCGTGACTCTCATCTTTCCTCGGTCGCGTTTATTGTTGACCTGTTGCTG
CTAGAGAAAACGTTTGTGCGTGGTCGGTGCGTCCGCCATGTAACTGGCCT
CGGCGCCTTCGCCGCACTTGCCCGCGCACTCCAGCAGGACTCTGGCGTGT
TGACTGTGGGCGCTATCGCTGTTCGAATGATCAACGTATCAGTGTATTTG
CCTTGGGAGAGAAGATTATATCACGGGGTATTCGCGTGTCGATCTATGGT
GGTATCCAGGGTAATTGGTAGAGAGTCTCCTTTCTACGCTGCGTCCAGGA
GCAGGAAACACATCGATGTCGAGCGGCATTCCATCCTGGATTTGACCTAT
AATAACTCGAGGGCACGGGCGACAGCGAGCCTTCCTCGAGCCCCCGTCGA
TTTTGCGCACTTTCCAATCGGCAGGAGGCGGTTGTGCGGTCTAAGGGCGT
GAAACCAACCGATCATCACGGCTCGGGGGTGGAAACGCCGACCACAAGGT
TTCCAACACGCCGCCCCCTTCCGGAAGCGGGAAGGGAGCTGTCAGTGGCG
GGAAAAGCGAGTCCGCGTCGTCTGCATCGCCCACGTCAGAAGCCGGGGGG
GGGGTCCGTCAACCCGCAGGACAAGCTGAACGGGACGAGCCGGACGACCT
CGACAAGGAGGAGAGGCACCGTATTTCATGGGGTGGACAACCGTCGCGGG
GTATTGGCGGCGGGCGGAAGCGCACCTCTGCGCTTAGCAGCTGCGCCGCA
ACGCTCGTTGGGACGGATGCGTTCCGGAACGCGGACCATTGAGTTGGGGC
AGGCGCTGATGGCGCTCGCCAAGGACTGCACCGACACGCAAGCGCTGCTG
ATCGCGCTAGGTCCACAGGTGACGCACGAGGCCACAAAGGTTCTCGAGGA
GGTGTTCGAGCACTTCTTGCTCTACGCCTACATTGCAGACGCCCCTTCCA
CCCCAGGGAGGCCTGGTTTTGTTGTTGAGTCCCCCTTTGGCTTGCACGTT
CGTCACGCAGAGGGTGCTCCCAAGAGTTGGGCTTATGTTTGCAAGTTAAA
GTAGGCTTGAGGTGTCGCGTAGCCCTTTGCGCGCTGAACTACAACACAAG
GGTACGAACAGACGGGCGCGTTTTCGGATGATGTGGGTCCGAAGGGAATG
AACGCTTTTATGGCAAGGTAAGTGTTCGTGTGGGAAGGTTGACAAGTGTG
GTTACATTCCCAGGGAAAATGTTAATGTTAGGTTGGTTGCGCTCGGTTTG
GGCAGAAGCACAGCGTTGACTACATAGGGACATCCGCCGCGACCTCGTCC
GTTTCGTCCGTCAAGGCGGGGCTATTGCCGTACGCAACGGCTGGCCGCTG
CACCATGTAGACGTGACGAAGGCGTTCGTTAGAGCTTTGCTTGGCAGAGA
CATTTTCGTGGAGCTTTCGATGGGTTGCGGTAGGGGAAAGGGCAACATGC
TGTGAAGCTCGACAGAGCACTTTACGGCGTCCAACAGCCGGTCCGTCAAT
GGTCGGCTCACGTTTGTAAGATGTGCGTATCAAGGGCACGGCATGGGGCA
CTGCAAGGCAGACTCGTGTGTGTTCCGCAAGATAGTCGAGGGAGTAGGGA
CCTTGGACCTCGGCGTATACGTAGACGACAAAATCGTTGGGGGGTAAACG
GAGGCGTGCGATTAGCTCGCCATATTTCGGATGAGAAGTTCCCGACCAAC
AGCTACCGAGAAGTTAAGTGGTATCATACATGGGGTGCAGTGTACAGCGT
GACTGGGAGAAGGATCCGATCGCGATGAACCAACCCGATTCCAACGGACT
GTTAAAGCGTTTCAATGCGACCGCCCACTTCGAAGCCCTCGCGTCGCCCG
CCGCCGATCTAGGACCGACGGCAAGCAGTAACACGGCCATCGACCGCCCT
TTCGGGCACGTCGTTGGAGGCTCCATGTAGCTGGCCGGAGGGACGAGGCC
GGGCATCGTAAGTTCAGTCCGAGCCGTAGCGCATTACTCTCACGACCCGT
GTGAGAGGCACCGGAAGGCGGCGATGAAGATCCATGCTTCCCTTGGCTCA
TTGCGCGATCTGGGTCTTAACTTCGAGAAGAGGGCGAAGTTGGAGTTGTC
TGTGCTTGCGGATGCTGATTACCCCAGCAAACAATATTGGTAGGCTTTCG
ATTTTTGGTGTAGGAGTGTTATTGGGGGAAGCTGGAGTGTCTGCGACTAG
CCGTACTCAGCGCTGCGTGAGATTTTCAAGCACAAAGGTCGAGAGCGTGA
CCTTGGTCGAGGGGCCAAGGAGGGGCTGTTTGTGAGGGCGGTGTTGTCGT
CTGTGCAGCCGCAGCCGGTAAAGGTACCCATCGAGATGTACGACATAGAC
GTGCCGGAGGACGACGAAGGAGTCGATACCATGGCCGAAAGCCCCTTAGC
TCCAGGGGGAGTGTAAACACAACGACGTACGTTGGCGTAGGAGTTGTAAG
CATGTGCCATAGCCACCGCACGCAACCATCTTCCGGGTGAAATACCGCCC
TACGTTGATTTGTGTACACTCCTCCGAGAGCCAAGGGAATTTTCGGCCAT
GGCTTTGGCCCGGTCGTTGTCCTCCAACGTTTTCAATGGGTACCTGGGTC
GGATGAAAGGCCACCGTGTGTCAATGTGCTTGCTCCTCCCGGAGCTAAGG
GGGATAGGGGCAGATCGTGCACTTCGCGTCAGAATGGCACCACGCAGATG
TTCTCATAAAGGCACTCTCTGACACACTGTTTTAAGATGGCATCGTGCGG
CCCTAGTGAACCTACTCGATGCGACGTAGGGGATATGTGTTGTGTGTGCT
AGCACGTCAGAGTTTCTCGTGTGAGCGCTATACCTCTAACATCGTGTACC
CGTAACGCGTTTGCGCGTATGTCGGGCTGGGACACCCAATCTACTTTGTA
AAGCATGGGTTTTGTAGGGAGTTCCCGGCGTAGCGTGCATCTGGCCTTGG
CCGGCGTTGGTGCGCTGAATTTTGTGTGGTTTCATTTGGTGACTGGTCCT
TGGGATTTTTTCCGGCATAGATTGAGGTATTCCTGGTTAATCCCTCCTTA
CCTAATGCACAGGGGTGTTTCTCCGTGGATATCCGTGTGGTAGTGTTGTC
ATGCTCGTAGGGTTGAGTTTCCCTCCCAACCTCAAAGGACCGTACGTAGA
CGGGACGTGAGATCTGAAACGTATTCCTAGCGTTGCTACTGATGTGTCAC
AGCAGAGGGTGTTCGTTGTTTCGGAGCATCAGTGTATTTGCCCTTGAGAG
AAGAAACGGCCTCGAGGTATTCACAGGTCGATCTACGGTTACATGCAGAG
GAGAGCATTCGTATGAGTCGTCGATCTATCTGGGAGGCAGTGGCCCTAGG
TAGGCATTGATTACATCTGAATCTCTTCGTTCTCAACTCTTACTATTACG
GAGGTACACTATAATCAAGTAATCAGGACCAAACCTCACGACCATGAATA
CTCAACTATTCCGACCATGAATACCCAAATAACAAAAAAACTCATGAAAA
ACTATAAAGACACGAGATATGGCCATACACAAGAACATCGACCTTGAAAT
CTCGATAATTCCAGCCTATTTCGATTGTTCTGGGTTGAGACTTGTGGCAA
ATTTGGACCTGTTAACTAGGGTCCCCCGTAATGTGACTCATGATTTTGAT
ATGGTATTATATTATCGTGCGATGTATAAAACCTAGTTCACTGTACCTTT
ATAGCCCCCCCCCCCGGCACGTACACCTTACTGAGAGAGGAAAGAACGTA
CCAGGTACCTACTTTCGGTTTCCCCTGGAACTAGTGTGCCTGTGAGTTAG
GGGTGTCCATGTGCGCTTGATGTTTTTACATATTAAACTCCTATTTGAGC
ACACTATTAGAGTAAACATCAAAGCATGGGGCAACGCTTGGAGGCGCTTG
ATTACAACCTGAGATTATATTTTTCGCTTGAATACGCAATGCGCGCGATT
GGTCAAGCGTAGGGTGTGTATATGCTACGAAGGATCGCACAGTTAATCGT
CCTGGTTGGGTTTTTAAACGGCGTTCCTCTGGTATCTGGTCATTGGCTAC
GGAGAGAACCACAATCTAACTGGAGACCCCGACATTACTTCTTACGGTCG
ATCGTAGGGTTTCCCTGGAAAGCGTCCGACTGAAACATGGGACCTGAAAT
GCTTCGCGCAGGACCCTCGCTCTCAAAGTTGAACCACGGAGCGTTTGCGC
ACCTTTCGCACCTCGTAATACGTGAAAGCTACAATCATCCAGGTGGGTGT
GTGAGAGCTCCTCGTGTCCCCTTCCCTTGTGTACCCAAAGGTGATTTCTA
CGGCCTCGGGGAAACACGCAAGCGGGAACTGGTGAAGGCCTGCGCCGTCC
TCGGGGTAAATCAGGTGAGCCCGGTCAGGTCGGTTGGTGCCTAGGCGCAA
GGCTATTATGTACGTATCCCGATCCGGTTGAGGGCTTGAACAGATTCGTT
TGGACGGGAAGCGTTTCTGCGAGACTTCGCAAGGCCGCACGGAATGCGCA
TGCGTCATAATCAGCGTTGTGCTCCGCTTTCAGGACGATGTCATCATCAT
CGAACATCCCGAGCTCCAGGACGGGAGCAGCACGCCCTGGCCTACGGAGG
TGGTGGCTTCCCACGTGCGAGATTTTGTTATCAAGTGCGGCATCGACACG
GTACGACGCCTATTTTGAAGCGATACGACGGGTAGTCTATACGCGGGACA
CTGGTGCTTCGTTGTTTCTCTGCAGCACCTGTGTTTCAGAGGTTGCTTTG
GTTACCTGTACATGATCGATTTATCATAGCCGTCTTTTTTTCGTAGCGAC
TGCTCTCATTTATTTGCTGCTCATGCTGTTCGCTTCAACTCGTTTCGCTC
CAACCGTCCGAGAATTCACCGGAAACTTGGGAACGGTGCCAGACGCTTGA
AATATCAGGCAATCCACCGACGATTGACTGCCGTCGAATGATACCAGGCA
GCGTTGGGTACCTGTTGTTGCTTGCATCTCGAGGGACAAACGACGTCCAA
TCAACGTACGGTAAACATCCTCTTGACTGAGCCAAACGCCACGCCAAACC
CATATTTACCAAGCCAAGCACAAGCACCACTGCACTGCTGTAACTGCGCA
CTGTTGTTCCTTGCGCTTCTGTTATGTTCCGCACAGCTGTTCACCTTTGA
CGACCGCGGCGTCTCCGGGCATTCCGACCACACCGCCGTCAGCAGAGGGG
TGGCTCTTCACCTCCGAATCCGAAATAACAGCACCGGAGACAGCACGCCG
CTTGAAGCCTTCGCGCTCGTCAGCACGGGCATGTTACGCAAGTACTCGGG
CTTGCTGGACCTGCCGTGGTCGTTCGCGACATCGCTCCCCCCACCGTGGG
GAGCGGTCTTCGTCAGCTTCAATATGAGGACTGCGTGGAGGGCAATGGCG
GCGCACCGCAGCCAGTTCGTTTGGTACCGGAGACTGTTCGTTGTTTTCTC
GCGGTACGCGTACGTGAATACGTTCGATCGTTTGTGCGCCGCCACTCGGT
GA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1228:14195..20296-

>mRNA_S-dermatodea_contig1228.1428.1 ID=mRNA_S-dermatodea_contig1228.1428.1|Name=mRNA_S-dermatodea_contig1228.1428.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at S-dermatodea_contig1228:14195..20296- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGCAGCGACTCCGTCACTTCCGTTGGGAGGCAGGGTCGGGGTGGT
GATCGCGCACCCGGACGATGAGAGCATGTTCTTCGCGCCTACGCTGACTG
CAGTCAAGAGTCGCGGGGAGCGGGCTTTCGTGCTCTGCTTGTCTTCAGAT
GGCAGCAGCGACTCCGTCACTTCCGTTGGGAGGCAGGGTCGGGGTGGTGA
TCGCGCACCCGGACGATGAGAGCATGTTCTTCGCGCCTACGCTGACTGCA
GTCAAGAGTCGCGGGGAGCGGGCTTTCGTGCTCTGCTTGTCTTCAGGTGA
TTTCTACGGCCTCGGGGAAACACGCAAGCGGGAACTGGTGAAGGCCTGCG
CCGTCCTCGGGGTAAATCAGGTGATTTCTACGGCCTCGGGGAAACACGCA
AGCGGGAACTGGTGAAGGCCTGCGCCGTCCTCGGGGTAAATCAGGACGAT
GTCATCATCATCGAACATCCCGAGCTCCAGGACGGGAGCAGCACGCCCTG
GCCTACGGAGGTGGTGGCTTCCCACGTGCGAGATTTTGTTATCAAGTGCG
GCATCGACACGGACGATGTCATCATCATCGAACATCCCGAGCTCCAGGAC
GGGAGCAGCACGCCCTGGCCTACGGAGGTGGTGGCTTCCCACGTGCGAGA
TTTTGTTATCAAGTGCGGCATCGACACGCTGTTCACCTTTGACGACCGCG
GCGTCTCCGGGCATTCCGACCACACCGCCGTCAGCAGAGGGGTGGCTCTT
CACCTCCGAATCCGAAATAACAGCACCGGAGACAGCACGCCGCTTGAAGC
CTTCGCGCTCGTCAGCACGGGCATGTTACGCAAGTACTCGGGCTTGCTGG
ACCTGCCGTGGTCGTTCGCGACATCGCTCCCCCCACCGTGGGGAGCGGTC
TTCGTCAGCTTCAATATGAGGACTGCGTGGAGGGCAATGGCGGCGCACCG
CAGCCAGTTCGTTTGGTACCGGAGACTGTTCGTTGTTTTCTCGCGGTACG
CGTACGTGAATACGTTCGATCGTTTGTGCGCCGCCACTCGGTGACTGTTC
ACCTTTGACGACCGCGGCGTCTCCGGGCATTCCGACCACACCGCCGTCAG
CAGAGGGGTGGCTCTTCACCTCCGAATCCGAAATAACAGCACCGGAGACA
GCACGCCGCTTGAAGCCTTCGCGCTCGTCAGCACGGGCATGTTACGCAAG
TACTCGGGCTTGCTGGACCTGCCGTGGTCGTTCGCGACATCGCTCCCCCC
ACCGTGGGGAGCGGTCTTCGTCAGCTTCAATATGAGGACTGCGTGGAGGG
CAATGGCGGCGCACCGCAGCCAGTTCGTTTGGTACCGGAGACTGTTCGTT
GTTTTCTCGCGGTACGCGTACGTGAATACGTTCGATCGTTTGTGCGCCGC
CACTCGGTGA
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