mRNA_S-dermatodea_contig12260.1420.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12260.1420.1
Unique NamemRNA_S-dermatodea_contig12260.1420.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12260.1420.1 vs. uniprot
Match: A0A6H5KU86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.570e-60
Identity = 102/117 (87.18%), Postives = 108/117 (92.31%), Query Frame = -1 
Query:  169 RNADGTGVLEKRMERAIYDAIRTGDTHPIIGLIRAGVSPNFKRPAGETCLHAAAYCGSLELVKDLARRHADPAVKDSHGNLPVDLAAMQGKEEVVAFLQPLAPSTTSYTIAAHQRHR 519
            RN DGT VLEKRMERAIY+AIR GDT PI+GLIRAGVSPNFKRPAGETCLHAAAYCG+L+LVKDLA R ADPAVKDSHGNLPVDLAAMQGK+EVV FLQPLAPS T +TIAAHQRHR
Sbjct:  876 RNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSKTPFTIAAHQRHR 992
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BLAST of mRNA_S-dermatodea_contig12260.1420.1 vs. uniprot
Match: D8LD31_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 7.980e-60
Identity = 95/111 (85.59%), Postives = 101/111 (90.99%), Query Frame = -1 
Query:  187 RNADGTGVLEKRMERAIYDAIRTGDTHPIIGLIRAGVSPNFKRPAGETCLHAAAYCGSLELVKDLARRHADPAVKDSHGNLPVDLAAMQGKEEVVAFLQPLAPSTTSYTIA 519
            RN DGT VLEKRMERAIY+AIR GDT PI+GLIRAGVSPNFKRPAGETCLHAAAYCG+L+LVKDLA R ADPAVKDSHGNLPVDLAAMQGK+ VV FLQPLAPS T +TIA
Sbjct:  165 RNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDAVVGFLQPLAPSKTPFTIA 275
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BLAST of mRNA_S-dermatodea_contig12260.1420.1 vs. uniprot
Match: A0A672H3I0_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H3I0_SALFA)

HSP 1 Score: 57.4 bits (137), Expect = 1.640e-7
Identity = 35/91 (38.46%), Postives = 45/91 (49.45%), Query Frame = -1 
Query:  217 RMERAIYDAIRTGDTHPIIGLIRAGVSPNFK-RPAGETCLHAAAYCGSLELVKDLARRHADPAVKDSHGNLPVDLAAMQGKEEVVAFLQPL 486
            R  R     +  G T     L++ G  PN   R  G T LH AA  G L+ V+ L    ADP  +D   ++P DLAA  G E+V +FLQ L
Sbjct:   36 RFGRTALQVMMMGSTPVAQVLLKHGADPNVADRSTGATPLHDAARTGFLDTVRLLVHFGADPRARDHANDVPADLAAQHGHEDVASFLQTL 126
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BLAST of mRNA_S-dermatodea_contig12260.1420.1 vs. uniprot
Match: A0A6P3W3Q6_CLUHA (cyclin-dependent kinase 4 inhibitor C n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3W3Q6_CLUHA)

HSP 1 Score: 51.6 bits (122), Expect = 2.320e-5
Identity = 36/96 (37.50%), Postives = 46/96 (47.92%), Query Frame = -1 
Query:  226 DGTGVLEKRMERAIYDAIRTGDTHPIIGLIRAGVSPNFKR-PAGETCLHAAAYCGSLELVKDLARRHADPAVKDSHGNLPVDLAAMQGKEEVVAFL 510
            +G GV     +R     +  G T     L+  G  PN +    G T LH AA  G LE V+ L   HAD    D++   PVDLA + G +EVV FL
Sbjct:   28 NGNGV--NGFQRTPLQVMMMGSTPVARLLLEHGAVPNVRDCSTGTTPLHDAARTGYLETVRLLVEFHADSQATDNNNCRPVDLAQLNGHQEVVDFL 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12260.1420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KU86_9PHAE1.570e-6087.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD31_ECTSI7.980e-6085.59Ankyrin repeat-containing protein, putative n=1 Ta... [more]
A0A672H3I0_SALFA1.640e-738.46Uncharacterized protein n=1 Tax=Salarias fasciatus... [more]
A0A6P3W3Q6_CLUHA2.320e-537.50cyclin-dependent kinase 4 inhibitor C n=1 Tax=Clup... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12260contigS-dermatodea_contig12260:2528..3046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size520
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.3796594-CDS-S-dermatodea_contig12260:2527..30461622924240.3796594-CDS-S-dermatodea_contig12260:2527..3046Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12260 2528..3046 +
1694079117.6813726-CDS-S-dermatodea_contig12260:2527..30461694079117.6813726-CDS-S-dermatodea_contig12260:2527..3046Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12260 2528..3046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12260.1420.1prot_S-dermatodea_contig12260.1420.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12260 2528..3046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12260.1420.1

>prot_S-dermatodea_contig12260.1420.1 ID=prot_S-dermatodea_contig12260.1420.1|Name=mRNA_S-dermatodea_contig12260.1420.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=173bp
GWGKACKCLLVVEDRGGEGHAALLLLLLLLLLLLLLLLLSLLLLLLLLLL
LLLELVPMSLVRRDRVRRRGRCQRLQKGHDLLLPLHGRKVHRKVPVRVLH
GRVRVSARQVLHQLQRAAVGGGVETCLSRRPLEVWGNPCADEADDWMSVA
GTDGVVDGALHALLEHPGAVGIP
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mRNA from alignment at S-dermatodea_contig12260:2528..3046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12260.1420.1 ID=mRNA_S-dermatodea_contig12260.1420.1|Name=mRNA_S-dermatodea_contig12260.1420.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=519bp|location=Sequence derived from alignment at S-dermatodea_contig12260:2528..3046+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTGGGGGAAGGCCTGCAAGTGCCTGCTGGTGGTGGAGGATAGGGGGGG
GGAAGGGCACGCCGCGCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGCTGC
TGCTGCTGCTGTTGCTGTCGCTGCTGCTCCTCCTTCTGCTGCTTCTGCTT
CTGCTGCTTGAGCTTGTGCCGATGTCGCTGGTGCGCCGCGATCGTGTACG
ACGTCGTGGAAGGTGCCAGCGGCTGCAAAAAGGCCACGACCTCCTCCTTC
CCCTGCATGGCCGCAAGGTCCACCGGAAGGTTCCCGTGCGAGTCCTTCAC
GGCCGGGTCCGCGTGTCGGCGCGCCAGGTCCTTCACCAGCTCCAGCGAGC
CGCAGTAGGCGGCGGCGTGGAGACATGTCTCTCCCGCCGGCCGCTTGAAG
TTTGGGGAAACCCCTGCGCGGATGAGGCCGATGATTGGATGAGTGTCGCC
GGTACGGATGGCGTCGTAGATGGCGCGCTCCATGCGCTTCTCGAGCACCC
CGGTGCCGTCGGCATTCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12260:2528..3046+

>mRNA_S-dermatodea_contig12260.1420.1 ID=mRNA_S-dermatodea_contig12260.1420.1|Name=mRNA_S-dermatodea_contig12260.1420.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at S-dermatodea_contig12260:2528..3046+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTGGGGGAAGGCCTGCAAGTGCCTGCTGGTGGTGGAGGATAGGGGGGG
GGAAGGGCACGCCGCGCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGCTGC
TGCTGCTGCTGTTGCTGTCGCTGCTGCTCCTCCTTCTGCTGCTTCTGCTT
CTGCTGCTTGAGCTTGTGCCGATGTCGCTGGTGCGCCGCGATCGTGTACG
ACGTCGTGGAAGGTGCCAGCGGCTGCAAAAAGGCCACGACCTCCTCCTTC
CCCTGCATGGCCGCAAGGTCCACCGGAAGGTTCCCGTGCGAGTCCTTCAC
GGCCGGGTCCGCGTGTCGGCGCGCCAGGTCCTTCACCAGCTCCAGCGAGC
CGCAGTAGGCGGCGGCGTGGAGACATGTCTCTCCCGCCGGCCGCTTGAAG
TTTGGGGAAACCCCTGCGCGGATGAGGCCGATGATTGGATGAGTGTCGCC
GGTACGGATGGCGTCGTAGATGGCGCGCTCCATGCGCTTCTCGAGCACCC
CGGTGCCGTCGGCATTCCTGGGTGGGGGAAGGCCTGCAAGTGCCTGCTGG
TGGTGGAGGATAGGGGGGGGGAAGGGCACGCCGCGCTGTTGCTGTTGCTG
CTGTTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCTGTCGCTGCTGCTCCT
CCTTCTGCTGCTTCTGCTTCTGCTGCTTGAGCTTGTGCCGATGTCGCTGG
TGCGCCGCGATCGTGTACGACGTCGTGGAAGGTGCCAGCGGCTGCAAAAA
GGCCACGACCTCCTCCTTCCCCTGCATGGCCGCAAGGTCCACCGGAAGGT
TCCCGTGCGAGTCCTTCACGGCCGGGTCCGCGTGTCGGCGCGCCAGGTCC
TTCACCAGCTCCAGCGAGCCGCAGTAGGCGGCGGCGTGGAGACATGTCTC
TCCCGCCGGCCGCTTGAAGTTTGGGGAAACCCCTGCGCGGATGAGGCCGA
TGATTGGATGAGTGTCGCCGGTACGGATGGCGTCGTAGATGGCGCGCTCC
ATGCGCTTCTCGAGCACCCCGGTGCCGTCGGCATTCCT
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