mRNA_S-dermatodea_contig1225.1416.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1225.1416.1 vs. uniprot
Match: A0A836CEG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG6_9STRA) HSP 1 Score: 167 bits (423), Expect = 3.440e-39 Identity = 151/509 (29.67%), Postives = 228/509 (44.79%), Query Frame = 1
Query: 19 APILNAGFRAVLAEASKRGVLKPPYGRTAMPDPNKIIEDDPFGSTGEENGEADENDAETKGDDRRGSXXXXXXXXXXXXXXXXKLLEYKFDYGFNPLVFLGDFLRRNNPAAIQARREKRIADLAYLRQRAVKGLDREDALTELRALVIHRCMGLVHGPIVGDVSDCGGLVWAKTFRPVGQLMVDLSRHEDFRT--VCRQGSTKADRSTDCLAVVEFDELAPNTTWHHRTYLHNPRKGFNGPAAGFCTKGTFSTLPERDGDAERV-FRFVVFSLHGLGRKRVAAERRDEIEGACSAICAVEPKVCVVLGE-------PSTPRGAK-----TEKRTLCPEGFGELQETVSRIPALSCLMRSYGFLTAPGILRNASSKRQKVRIRCRKDRRSKPKREGSRAEGAIDSCAKKRGSARAGGNPEGGGDKVTAAP-VPDWALRCPESWGSRMLGLS--AEMFLIDARSGSVGEEQLAWVTEAVEESNCTWKLIACGVPVGFQVAPRDRATSTDED 1491
A +L+ G RA+LAEA + V++PPYGR+ +PDP K++E P + X X XXXXXXXX L+ YK++YGFNPLV+LG++L + +P +QA +E + + + R++A +LR L R G+V GP+VG + GG++WAKT R G L + L + F + + D ++C A + LAP T +H+R + P GF G G T+GTF TLP A R F+ FS L ++ G + + A EP C+ LG+ S P G + TE R + + + P L L+RS GFLTA R + +GS GA SC G + + D + A V D+ + G M+ LS E+++++ R+G++ + +A+ S TWKL+A G + P +T D
Sbjct: 694 ATLLDEGIRALLAEAQRLDVVQPPYGRSVIPDPRKVLEPTP---------------------EXXXXXVXLQVTXXXXXXXXNALMAYKYEYGFNPLVYLGEWLLQRDPVRLQAEKEAQEREQQKEELAKAQSAVRKEAFAQLRDLTARRRSGVVAGPVVGAIDAQGGVLWAKTLR-TGTLQLQLCADDGFAPEHILLTDTVDVDIMSECSARIPLGGLAPETPYHYRVCVDKPSHGFYGIDGGCFTQGTFRTLPAPSNRAARSELTFMGFSSDALVDHAMS--------GVFAGMLASEPNFCLFLGDMTAGTALSSRPGGFRGKLPPTEGREDRVRSYRAFHAMIEQCPPLRQLVRSVGFLTAWDDSRALHA--------------HTGSNDGSSKAGAAGSCG------TGGVSQDATVDTMAALQLVADYWPVHGKGSGFSMVTLSPGVELYVLETRAGTLPNASAQQLKKAILASTATWKLVAVGTSLSAPPGPAPSGFTTVSD 1152
BLAST of mRNA_S-dermatodea_contig1225.1416.1 vs. uniprot
Match: A0A7S2MF24_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MF24_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 5.630e-18 Identity = 65/222 (29.28%), Postives = 102/222 (45.95%), Query Frame = 1
Query: 277 EYKFDYGFNPLVFLGDFLRRNNPAAIQARREKRIADLAYLRQRAVKGLDREDALTELRALVIHRCMGLVHGPIVGDVSDCGGLVWAKTFRPVGQLMVDLSRHEDFRTVCRQGSTKADRSTDCLAVVEFDELAPNTTWHHRTYLHNPRKGFNGPAA--GFCTKGTFSTLPERDGDAERVFRFVVFSLHGLGRKRVAAERRDEIEG-ACSAICAVEPKVCVVLG 933
++ +++GFNP+V LG++LR NNP I+ RR ++ +AYL++R L E + A V C G+ GP+ G VS +WA + P GQ++ ++S EDF + + + D V+ L P + ++R YL N KG G +G +TLP+ + + F V L G A R C +I A + V G
Sbjct: 8 KFIYEFGFNPVVQLGNYLRINNPVFIEKRRNQKAEAVAYLQKRGQAALKIETTFQSILARVKTMCSGITLGPVCGSVSYDSVKLWAASKSP-GQIIFEISYQEDFAALSDRVGVEVDDEIGLTGCVQIGHLHPASVVYYRAYLEND-KGSTPIRLDRGEFIRGKVTTLPDPEDEVNLEFTVVGSPLFTKGHPLAGAIGRSATWARTCESIIASDSSFTVFNG 227
BLAST of mRNA_S-dermatodea_contig1225.1416.1 vs. uniprot
Match: A0A7S3XL53_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL53_HETAK) HSP 1 Score: 88.6 bits (218), Expect = 1.180e-16 Identity = 56/184 (30.43%), Postives = 99/184 (53.80%), Query Frame = 1
Query: 49 VLAEASKRGVLKPPYGRTAMPDPNKIIEDDPFGSTGEENGEADENDAETKGDDRRGSXXXXXXXXXXXXXXXXKLLEYKFDYGFNPLVFLGDFLRRNNPAAIQARREKRIADLAYLRQRAVKGLDREDALTELRALVIHRCMGLVHGPIVGDVSDCGGLVWAKTFRPVGQLMVDLSRHEDFRTV 600
+L + + +L PPYGR + + E+D S+ +E+GE +++ +D + +K+DYGFNPLV+LG +L++NNP I +++++ LAYL++RA L +++ +L+ ++ G+ GP+ G + + WAKT +P G L+V +S +EDFR V
Sbjct: 3 LLKKVIELDILDPPYGRPHVAKFKE--EEDESDSSSDEDGETSSDESTVDLEDPK----------------------FKYDYGFNPLVYLGTYLKKNNPIFISQKQKEKENSLAYLQKRADHALRQQEIALQLQEQMVRLRSGIQQGPVCGGATADSIVFWAKTTKP-GNLVVQVSDYEDFRYV 161
BLAST of mRNA_S-dermatodea_contig1225.1416.1 vs. uniprot
Match: A0A7S3GMX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GMX5_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 7.020e-14 Identity = 61/217 (28.11%), Postives = 103/217 (47.47%), Query Frame = 1
Query: 25 ILNAGFRAVLAEASKRGVLKPPYGRTAMPDPNKIIEDDPFGSTGEENGEADENDAETKGDDRRGSXXXXXXXXXXXXXXXXKLLEYKFDYGFNPLVFLGDFLRRNNPAAIQARREKRIADLAYLRQRAVKGLDREDALTELRALVIHRCMGLVHGPIVGDVSDCGGLVWAKTFRPVGQLMVDLSRHEDFRTVCRQGSTKADRSTDCLAVVEFDELAP 675
I++ G +LAEA K+ L PPYGR A P P +I +D F ++G +D E E+KF+YGF+PL FL DF+ ++P +++ RR+K+IA +L+ RA + +L L + G++ GPI+ S +V K + +G+++ +S+ DF+ V ++ D D V +++ P
Sbjct: 14 IVHDGIAKLLAEAKKKDCLDPPYGREAFPTP--LITEDQF----IQDGALQSDDVEP---------------------------EFKFEYGFDPLKFLSDFIVWSHPNSVEDRRQKKIAAAKFLQLRADHARLQLSISRDLSQLANDQSSGILWGPIITPTSSTSVMVSCKPIK-LGKVIFQISKFRDFKEVLQREEVFVDSLNDESEVATLEDILP 196 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1225.1416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1225.1416.1 >prot_S-dermatodea_contig1225.1416.1 ID=prot_S-dermatodea_contig1225.1416.1|Name=mRNA_S-dermatodea_contig1225.1416.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=733bp LDLASVAPILNAGFRAVLAEASKRGVLKPPYGRTAMPDPNKIIEDDPFGSback to top mRNA from alignment at S-dermatodea_contig1225:6425..13253- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1225.1416.1 ID=mRNA_S-dermatodea_contig1225.1416.1|Name=mRNA_S-dermatodea_contig1225.1416.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6829bp|location=Sequence derived from alignment at S-dermatodea_contig1225:6425..13253- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1225:6425..13253- >mRNA_S-dermatodea_contig1225.1416.1 ID=mRNA_S-dermatodea_contig1225.1416.1|Name=mRNA_S-dermatodea_contig1225.1416.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4398bp|location=Sequence derived from alignment at S-dermatodea_contig1225:6425..13253- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |