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Homology
BLAST of mRNA_S-dermatodea_contig12243.1412.1 vs. uniprot
Match: A0A6H5LCQ5_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 5.260e-18 Identity = 51/78 (65.38%), Postives = 55/78 (70.51%), Query Frame = 2
Query: 491 PVSRSAANTGTGGXRRIXXXXXXXXXXXXRSAVQEDVMEAPTAPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV 724
PVSRSAAN GTG RR A ++ +EAP PRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQ+
Sbjct: 76 PVSRSAANAGTGAGRREARPRSLREEGGG-GAGGDESLEAPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQL 152
BLAST of mRNA_S-dermatodea_contig12243.1412.1 vs. uniprot
Match: D7FZ71_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 6.470e-18 Identity = 51/78 (65.38%), Postives = 55/78 (70.51%), Query Frame = 2
Query: 491 PVSRSAANTGTGGXRRIXXXXXXXXXXXXRSAVQEDVMEAPTAPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV 724
PVSRSAAN GTG RR A ++ +EAP PRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQ+
Sbjct: 93 PVSRSAANAGTGAGRRRQRGEEGGGR-----AGGDESLEAPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQL 165
BLAST of mRNA_S-dermatodea_contig12243.1412.1 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 2.560e-10 Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 2
Query: 611 PTAPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV 724
PTA RRRGRKG+SIYRGVCVTREGKWRAVIYKERKQ+
Sbjct: 18 PTA--RRRGRKGKSIYRGVCVTREGKWRAVIYKERKQL 53
BLAST of mRNA_S-dermatodea_contig12243.1412.1 vs. uniprot
Match: A0A6H5JUY3_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY3_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 3.670e-9 Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query: 605 EAPTAPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV 724
+APT RRRGR+G+S+YRGVCVTREGKWRAVIYKERKQ+
Sbjct: 91 KAPTT-HRRRGRRGKSVYRGVCVTREGKWRAVIYKERKQL 129
BLAST of mRNA_S-dermatodea_contig12243.1412.1 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA) HSP 1 Score: 50.4 bits (119), Expect = 3.230e-5 Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 2
Query: 656 YRGVCVTREGKWRAVIYKERKQV 724
YRGVCVTREGKWRAVIYKERKQ+
Sbjct: 1 YRGVCVTREGKWRAVIYKERKQL 23
BLAST of mRNA_S-dermatodea_contig12243.1412.1 vs. uniprot
Match: A0A835ZDL0_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL0_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 8.640e-5 Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 2
Query: 581 SAVQEDVMEAPTAPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV 724
SA D P RRGRKG+SIYRGV TREGK+RAV+Y ERKQ+
Sbjct: 114 SAALRDANNRP-----RRGRKGKSIYRGVSHTREGKYRAVLYVERKQI 156
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 724 |
| Cds size | 576 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622924239.2366989-UTR-S-dermatodea_contig12243:6835..6983 | 1622924239.2366989-UTR-S-dermatodea_contig12243:6835..6983 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig12243 6836..6983 - |
| 1694079116.8193297-UTR-S-dermatodea_contig12243:6835..6983 | 1694079116.8193297-UTR-S-dermatodea_contig12243:6835..6983 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig12243 6836..6983 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12243.1412.1 >prot_S-dermatodea_contig12243.1412.1 ID=prot_S-dermatodea_contig12243.1412.1|Name=mRNA_S-dermatodea_contig12243.1412.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=192bp
MRQYLYFAGGRGLGPGRGGGTPFAPSVSHLRSHDSERIKSSHVSERTSPS SRPPPPPQPPTPAPRARRSFLSQKKQNYVTKMNTGTSSEEDVLDRPSHSS RGASATASASRGAGPVSRSAANTGTGGGRRISGGGGGSRGGGGRSAVQED VMEAPTAPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQV back to topmRNA from alignment at S-dermatodea_contig12243:1992..6983- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig12243.1412.1 ID=mRNA_S-dermatodea_contig12243.1412.1|Name=mRNA_S-dermatodea_contig12243.1412.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4992bp|location=Sequence derived from alignment at S-dermatodea_contig12243:1992..6983- (Saccorhiza dermatodea SderLu1190fm monoicous) GCTGCGCCACCAGGTCCCAAGCGCGCCACGCGAGCGTCGACTGGGGCGCC
CATCGCCCTCACGGCCAAGGGCTCGCTGTACAAGGCCAACAAGGACACGG
GTGAGCGAGCAGTAGGCCTCGGGTATCCGTGGTGGTGGTGGGGCCCGTAT
GAGGCAGTATTTATATTTCGCGGGGGGACGGGGCTTGGGGCCCGGGCGAG
GAGGGGGCACGCCGTTCGCCCCTTCTGTGTGTTTCGTCGTGTTTGGTTTC
AATATTCATATTCATATTGTACTTGTATTTTGTATGTTTATACTACTGCT
TTACTGACTTGTACCATATTCAATTTTCATGCGCCGCTGCGTGGCGCAAT
AAAAAAAGCATGTGCGTATTGGAAGCCCTTCGCCTCATACATCTGTGCAT
GCACTTTTTTTATTTTATGGGAACCACTCCTTTCCCTTTCGCTTCAACCG
CTGAGCGGCCCTAGTCGCCGAGGGCCCGGAGTGGACCGAGCTCGGACCGA
GCTTTGGCCGGCTGGCACGGGGGCGAGCCTGCTGTCTCTAGGTGTAGACA
CCACACACTCTTCTTCCTCGCATGTTTCGTGTGTGTGTGTTCGCCCGCTT
TTATTTGGCGCAGGGCCCCCCTTTGATACAAGTATGTTTCACGGGATTGG
ATTGTGTTGTTATTTGTGTTTGTTTTTCAACCTATACTAATTAAGACAAT
AGAAGGATGCATCGTTCGGTTCGGCTCGGAGGGGTACAAAGTGCAAAGTC
ATATGCATTCACAATAGATTTTGTTTCTTATAAATTGGAATACACATATT
ACACATATTCTCCTGTTTTGCACATGAAGTGCATGCACGGCAGAGCGACG
CGAATCGCCGTTTGTTGGTTTCAGTCAGTCATGGTGTGTGTGGGGGGGGG
TTCGAGGGGGGATGTTAGGTGGGTGGCTTTCTGTGCGACTTTGTACTTTT
CTCCTAAATCAGGGTTTGTGCGTACGGAACGCCAGACAGATGAATGACAA
ATCGCAATTAGGCCGCGGTTGATGTATTGTATCCCTACAGCAGTCAGCAG
TATGATGGAACCAACTTCCTTCTTCTGTGGGGTATATTTTTATTTTGTGT
TGCTTGTACGTATAAATACCAGTATGATATAATAGCACAAGATATATTAT
AGGTTTCCATACAAGCTGTATGATGGTCGTGTTTTTGGTGCATGATGATC
TTTTTTCCGAGCTCATTTTTCCGCTTCCGCTTTTTTTTAACCAACTGCTC
CTGAGTCCTCTCCCCAACGGTTTATCGCGTCTGGTCGGCTGGCTGCAAAC
GCGCACGAGTAGAACACACGGTCGTGTGTGGGCTTTGTTTGTATCCGATT
GGCAAACTCCCGCGTAATCGCGTCGGGTGGATGACGTTGCTTGGGAGACC
GAAATAAACAAATAACCAACACACCAGACCAGACCATGAGACCCAAACTC
ACGCTCCTGCCGAATTCGAAAAAGAAGAGTCGAGTCGAATTTGTCTCCGC
TCGTGTTCTGCGACGATTCGCGTGCATACATGCCACAATTTTTGTAAGAG
GAAGAAAAATATATATTATTAGCATGATACAGCAGTATAAGGTGGTGCAT
GATTCGCATGAATCAAGAGAACCGGTGACAGCTCGGAACAGAAGCCAAAG
AGCTATGTATCTGAAGTAGGTGCAGATATCATCGGGGCTTGCTACCTGCA
CACTTCGCGCGTTTGTTGTTTCATGAGCGCGGCGTGTGTTGTATCCGTGC
CCTGCCTACATCGCATGCGGGGCATGATGTTTATTGACTCGGGGCTCGAG
GGCCAAGCCCCCCACCGCGCGAACAATATGGCGACCCGCCGGATTTTGGC
ATATGCTGGTGCGAAACACACGCAGACGAAATCCTACATTCGGAAGTGAT
CGTAATACGATGGAGCCCAATCGAGCCGGGGGTCATGTTTCGATGTTTGT
TTGCGGGTGCGTTTCGAAGATTCGCGAGAAAATGGTTGGGAAAAAATGGG
CTGGTTCGGAACGTATTTGTACTGTATTTGTACTGATTTGTATGTGTGTT
TTGTGTTTTTCTCGACCACGCCTTGGGCAGACTTTCAGTTTGTATGCACA
TATATATCCTGTGTAATGTAAGTTAACTTTAGGGGTCTTCTGAACATGTT
TTTTGCATTTTGTTTGCAGTTGCACGGGTCATGTGTCATGTCATAACTCA
TGTCATGCATCATCTGTGATATTGTATCATGTTTGTGCACACCGAAAAAC
TGCACAGGGCGCGTCTCCTCTGTGTCTTTTGGGCGGCAACGCCCGACTGC
ATTTCCGCGAGAAAGTTTAAAACACGTCCCGTGCGGTTGCTCACGTCGCG
TGCCTTGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTACCCCTCTGTGGCATCCAAATGCTTTTTGGG
GGCAGACGCACCCGCAGGTACTATTAATAGTATATTTTTTGCGTTAATTG
GTACTTGGCGTGTGTCCCTCATGTATCGTATATCGTACATACAGCAGTCT
ACCCCAGTCATACCGTACCGCTGGGCCCGGTGGCTTTGTGGGTGCCGCCA
AGTGAAATGTTCATGTATTTCGAGCACATTCGCGCTTCGTGATGTCCTGT
GTGTTGTGTGTGTGCCTGTTTGTATATACTGTGTGATGTGTGAAGGTGTT
TGGCGCGCCTGCTAACTCGAGGGGGGTCGTTTCAGTCACTTGAACTGCAC
GTGTTTTCCTTCTGGCTTGGTTTGTACTCTGACCTCTACTTGTACTTGTA
TGATAGTAAATTGGGATCGTATTATAGGTATATATACGTTTTATGTCTAT
GCCGCGGTGTGGCATAACGTGCCCTTGCTGTTTTGCTCGAGGCCGCGCCC
GCGGTCTTGTGTCGTAACGTTTAAGTATTAGTATTAGTAGCCCTGCTGTA
CTATCATATTACTGTAATGTTAATATCATGTTAATTAAGGAGTTTTAGCA
ATAGCTATGAAGTACTTGCTCTAGAAACAATAATCTATACGTGTGGCCGA
CGTCACGGGTTTATTACTCGAAACTATTGTGCTAAACCGTTATGACACAC
TGCAGTATAACACTATAATATAATAATAGCATCGTCATCGTCAGCATTAT
ACTGCTGCACCAGCGTGTGACGACGTCGATCTGCCGGGTCGTGATCTCTT
CTTGAGGTCGCTCCCGACTGTGCGCTCTTTTGAAGCGTGCGATGTGAACT
GATATGCACAGAGCTTTTATGCATTATGTTTGTATTGTACGGGCTGGGCT
GTCGGCTGCGTTTTTGAGCGAAACGTGTGACTCGTATCCGTAGTTTGTAT
TTCAAACGCATACTAAAATACTATTACAGTATGTAATAATATCTAATATA
CCTCGTACGAAATACTTGTAGAGCTTTAAACTATATACAGTTCGTGATGT
TGTAGCATTACTGCACCAATCTGTGCCATTTCGCTTTGATGCACAACTCT
CACGACACCCGTGTGCAACCGCGGTATCCGGTCGCCGTATGTTGAGCACG
GGTGATCCCTCCAGGAATTTTGCTGCCTCAGAGGTTTTTTTCTATGATAT
TTATATCAACATGTACATGTACATCTAGATACGGACCTCTCCCGAATCCG
CACTGTTATGACAGCGCACCCATGTTTGAGGCGAGGACCACAACCCATAT
CATATTACAGCTCTATATACGTCGCACTGCACATTAAAAAAAAATGCGGA
TGTGCTTGTGGTGCGTACAAAAGACGATACGATTGCAATGCACCTTCAGG
TCGGCCGAACGAAACCCCCGGGATTGCCTTATTGTGTCATGACCGGTTCT
GGCACTCCTCAAAAAACAAAAACCGGGTCACGAAGCTCAAGGGGGGGAAA
CCGCCAAAATGCCGAGACTCTTCCGATTCCCGCCCGGCCCCGCCTGTCTC
TCTCTTGTTGTGGTTGGTGTGTAGGCGTATGCTTTACCCCCGCAGTTTGT
TTCCCGTCTCGCCCGCAAAAGCGCAAAAGTGCCTGTGAACGGCGTTTTTG
GATCTTTAAAGGGAGTGTCGAAAAAGCACGAATACGTTGTATGTTGAGTC
ACAACCAGCCCCGACCGAGGGCTTCCGAACATTATCCGAAAATTTGCGGT
CACCAAAAGCAGCCGGAAATGCCCCCCCCCCCCCGTTCCACGTTCTTGCT
GATGCACGGCGGCAGAAGTATCATATGATGATGAGAAAAAAGCCCGATCT
GCAGCAGTACTATAATACTACTGTATGCATTTATTCAAGTTCCCATCTGC
GTTCTCATGACAGCGAACGAATTAAATCCTCGCATGTCTCGGAACGCACA
AGCCCCTCATCCCGACCCCCACCTCCACCCCAACCCCCAACCCCCGCACC
ACGTGCGCGACGCTCATTCCTCTCGCAAAAAAAACAAAATTACGTCACAA
AAATGAACACAGGAACCTCCTCGGAGGAAGACGTCTTGGACCGTCCCTCC
CACTCCTCCAGGGGTGCATCCGCCACCGCGTCGGCATCTAGGGGCGCCGG
GCCCGTTTCCAGGTCCGCGGCCAACACGGGAACCGGGGGGGGGCGGCGAA
TAAGCGGTGGCGGAGGCGGGTCCAGGGGTGGCGGAGGCAGGTCGGGTGGC
GGAGGGGGTGGGGGGAGGGGCGGGAGGGGCGGGAGGGGCGGGAGAGGTTC
TCAGCAGGCGACTGCGCTGCCTGCGCCTGCGGCAGCGGCGGCAATTGCTG
CGCCGCCTGTGGCGGCAACGGTGACGTCGGCAGCGGTGACGGCTGTTGCC
TCCATATCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGACGGCTGCAAC
AGCCGTCCAGGAGGATGTCATGGAGGCGCCGACGGCGCCGCGGCGCAGGC
GGGGGCGCAAGGGGAGGTCGATATACAGAGGCGTTTGCGTCACGCGGGAG
GGAAAGTGGCGCGCGGTGATTTATAAGGAGCGGAAGCAGGTG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig12243:1992..6983- >mRNA_S-dermatodea_contig12243.1412.1 ID=mRNA_S-dermatodea_contig12243.1412.1|Name=mRNA_S-dermatodea_contig12243.1412.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at S-dermatodea_contig12243:1992..6983- (Saccorhiza dermatodea SderLu1190fm monoicous) ATGAGGCAGTATTTATATTTCGCGGGGGGACGGGGCTTGGGGCCCGGGCG AGGAGGGGGCACGCCGTTCGCCCCTTCTGTATGAGGCAGTATTTATATTT CGCGGGGGGACGGGGCTTGGGGCCCGGGCGAGGAGGGGGCACGCCGTTCG CCCCTTCTGTTTCCCATCTGCGTTCTCATGACAGCGAACGAATTAAATCC TCGCATGTCTCGGAACGCACAAGCCCCTCATCCCGACCCCCACCTCCACC CCAACCCCCAACCCCCGCACCACGTGCGCGACGCTCATTCCTCTCGCAAA AAAAACAAAATTACGTCACAAAAATGAACACAGGAACCTCCTCGGAGGAA GACGTCTTGGACCGTCCCTCCCACTCCTCCAGGGGTGCATCCGCCACCGC GTCGGCATCTAGGGGCGCCGGGCCCGTTTCCAGGTCCGCGGCCAACACGG GAACCGGGGGGGGGCGGCGAATAAGCGGTGGCGGAGGCGGGTCCAGGGGT GGCGGAGGCAGGTCGGTTCCCATCTGCGTTCTCATGACAGCGAACGAATT AAATCCTCGCATGTCTCGGAACGCACAAGCCCCTCATCCCGACCCCCACC TCCACCCCAACCCCCAACCCCCGCACCACGTGCGCGACGCTCATTCCTCT CGCAAAAAAAACAAAATTACGTCACAAAAATGAACACAGGAACCTCCTCG GAGGAAGACGTCTTGGACCGTCCCTCCCACTCCTCCAGGGGTGCATCCGC CACCGCGTCGGCATCTAGGGGCGCCGGGCCCGTTTCCAGGTCCGCGGCCA ACACGGGAACCGGGGGGGGGCGGCGAATAAGCGGTGGCGGAGGCGGGTCC AGGGGTGGCGGAGGCAGGTCGGCCGTCCAGGAGGATGTCATGGAGGCGCC GACGGCGCCGCGGCGCAGGCGGGGGCGCAAGGGGAGGTCGATATACAGAG GCGTTTGCGTCACGCGGGAGGGAAAGTGGCGCGCGGTGATTTATAAGGAG CGGAAGCAGGTGCCGTCCAGGAGGATGTCATGGAGGCGCCGACGGCGCCG CGGCGCAGGCGGGGGCGCAAGGGGAGGTCGATATACAGAGGCGTTTGCGT CACGCGGGAGGGAAAGTGGCGCGCGGTGATTTATAAGGAGCGGAAGCAGG TG back to top
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