mRNA_S-dermatodea_contig12200.1380.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12200.1380.1
Unique NamemRNA_S-dermatodea_contig12200.1380.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12200.1380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12200contigS-dermatodea_contig12200:6037..6573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-21_003100.2
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924236.9241483-CDS-S-dermatodea_contig12200:6036..65731622924236.9241483-CDS-S-dermatodea_contig12200:6036..6573Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12200 6037..6573 +
1694079115.1955955-CDS-S-dermatodea_contig12200:6036..65731694079115.1955955-CDS-S-dermatodea_contig12200:6036..6573Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12200 6037..6573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12200.1380.1prot_S-dermatodea_contig12200.1380.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12200 6037..6573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12200.1380.1

>prot_S-dermatodea_contig12200.1380.1 ID=prot_S-dermatodea_contig12200.1380.1|Name=mRNA_S-dermatodea_contig12200.1380.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=179bp
PLVAAVASGQNNVWTPSVWREPSPGKQQQPQQQPQQQQQPQQQQQQEQRQ
QQQPLVAAVASGQNNVWTPSVWREPSPGKQPQPPQPLVTEVLSAQNNAWT
PTSWRGPPLGKQMREGVRLGLGNAGKTPDEIDNVQSILGPASLESPLPVV
EQGVGSDGSGGGFGDGILSLPLQLPLPQY
back to top

mRNA from alignment at S-dermatodea_contig12200:6037..6573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12200.1380.1 ID=mRNA_S-dermatodea_contig12200.1380.1|Name=mRNA_S-dermatodea_contig12200.1380.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at S-dermatodea_contig12200:6037..6573+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTTGGTGGCTGCGGTAGCATCGGGACAGAATAACGTCTGGACACCGAG
TGTATGGCGAGAGCCATCCCCCGGCAAGCAGCAGCAGCCGCAGCAGCAAC
CGCAACAGCAGCAGCAACCGCAACAGCAGCAGCAACAGGAGCAGCGACAG
CAGCAGCAGCCGTTGGTGGCTGCGGTAGCATCGGGACAGAATAACGTCTG
GACACCGAGTGTATGGCGAGAGCCATCCCCCGGCAAGCAGCCGCAGCCGC
CGCAGCCGTTGGTGACCGAGGTATTGTCGGCGCAGAATAACGCCTGGACA
CCGACTTCATGGCGAGGGCCCCCCCTCGGCAAGCAGATGCGGGAGGGCGT
GCGCTTGGGGCTCGGCAACGCGGGCAAGACCCCCGACGAAATCGACAACG
TTCAAAGCATCCTGGGCCCGGCGAGTCTTGAGTCGCCGCTGCCGGTGGTA
GAACAAGGGGTCGGCAGCGACGGTAGCGGTGGAGGGTTCGGTGACGGTAT
TCTGTCGCTTCCGCTACAGCTCCCTCTGCCCCAGTAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12200:6037..6573+

>mRNA_S-dermatodea_contig12200.1380.1 ID=mRNA_S-dermatodea_contig12200.1380.1|Name=mRNA_S-dermatodea_contig12200.1380.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at S-dermatodea_contig12200:6037..6573+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTTGGTGGCTGCGGTAGCATCGGGACAGAATAACGTCTGGACACCGAG
TGTATGGCGAGAGCCATCCCCCGGCAAGCAGCAGCAGCCGCAGCAGCAAC
CGCAACAGCAGCAGCAACCGCAACAGCAGCAGCAACAGGAGCAGCGACAG
CAGCAGCAGCCGTTGGTGGCTGCGGTAGCATCGGGACAGAATAACGTCTG
GACACCGAGTGTATGGCGAGAGCCATCCCCCGGCAAGCAGCCGCAGCCGC
CGCAGCCGTTGGTGACCGAGGTATTGTCGGCGCAGAATAACGCCTGGACA
CCGACTTCATGGCGAGGGCCCCCCCTCGGCAAGCAGATGCGGGAGGGCGT
GCGCTTGGGGCTCGGCAACGCGGGCAAGACCCCCGACGAAATCGACAACG
TTCAAAGCATCCTGGGCCCGGCGAGTCTTGAGTCGCCGCTGCCGGTGGTA
GAACAAGGGGTCGGCAGCGACGGTAGCGGTGGAGGGTTCGGTGACGGTAT
TCTGTCGCTTCCGCTACAGCTCCCTCTGCCCCAGTACCCGTTGGTGGCTG
CGGTAGCATCGGGACAGAATAACGTCTGGACACCGAGTGTATGGCGAGAG
CCATCCCCCGGCAAGCAGCAGCAGCCGCAGCAGCAACCGCAACAGCAGCA
GCAACCGCAACAGCAGCAGCAACAGGAGCAGCGACAGCAGCAGCAGCCGT
TGGTGGCTGCGGTAGCATCGGGACAGAATAACGTCTGGACACCGAGTGTA
TGGCGAGAGCCATCCCCCGGCAAGCAGCCGCAGCCGCCGCAGCCGTTGGT
GACCGAGGTATTGTCGGCGCAGAATAACGCCTGGACACCGACTTCATGGC
GAGGGCCCCCCCTCGGCAAGCAGATGCGGGAGGGCGTGCGCTTGGGGCTC
GGCAACGCGGGCAAGACCCCCGACGAAATCGACAACGTTCAAAGCATCCT
GGGCCCGGCGAGTCTTGAGTCGCCGCTGCCGGTGGTAGAACAAGGGGTCG
GCAGCGACGGTAGCGGTGGAGGGTTCGGTGACGGTATTCTGTCGCTTCCG
CTACAGCTCCCTCTGCCCCAGTAC
back to top