mRNA_S-dermatodea_contig12199.1373.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12199.1373.1
Unique NamemRNA_S-dermatodea_contig12199.1373.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12199.1373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12199contigS-dermatodea_contig12199:1944..2559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size616
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12199.1373.1prot_S-dermatodea_contig12199.1373.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12199 2050..2361 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924236.3663526-UTR-S-dermatodea_contig12199:1943..20491622924236.3663526-UTR-S-dermatodea_contig12199:1943..2049Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12199 1944..2049 +
1694079114.8251467-UTR-S-dermatodea_contig12199:1943..20491694079114.8251467-UTR-S-dermatodea_contig12199:1943..2049Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12199 1944..2049 +
1622924236.388594-UTR-S-dermatodea_contig12199:2361..25591622924236.388594-UTR-S-dermatodea_contig12199:2361..2559Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12199 2362..2559 +
1694079114.8417637-UTR-S-dermatodea_contig12199:2361..25591694079114.8417637-UTR-S-dermatodea_contig12199:2361..2559Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12199 2362..2559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924236.3787563-CDS-S-dermatodea_contig12199:2049..23611622924236.3787563-CDS-S-dermatodea_contig12199:2049..2361Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12199 2050..2361 +
1694079114.8334522-CDS-S-dermatodea_contig12199:2049..23611694079114.8334522-CDS-S-dermatodea_contig12199:2049..2361Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12199 2050..2361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12199.1373.1

>prot_S-dermatodea_contig12199.1373.1 ID=prot_S-dermatodea_contig12199.1373.1|Name=mRNA_S-dermatodea_contig12199.1373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MAARGAWCDDGGGEMRPKAANAIFEGGEEVEREKSYEYAGVCLVCLLPFF
CPSGVCIFSLYPPPLPPTPPRNSVGSEAARVHWRCSTCLPRVPRGFASDF
QFR*
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mRNA from alignment at S-dermatodea_contig12199:1944..2559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12199.1373.1 ID=mRNA_S-dermatodea_contig12199.1373.1|Name=mRNA_S-dermatodea_contig12199.1373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=616bp|location=Sequence derived from alignment at S-dermatodea_contig12199:1944..2559+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGATCTGGGTATACTACGCGTATAGTATGTATTGTATTGCGGCTTTGCT
GGGCTAAGGGCGGCACAAGACGAGGTGTTTTTGACGTGGATGAGGTTGGC
TGGTTGATGGCTGCGCGCGGCGCGTGGTGTGATGATGGAGGTGGCGAGAT
GCGCCCAAAGGCTGCAAACGCAATTTTCGAGGGCGGGGAGGAAGTCGAGA
GAGAAAAAAGCTACGAGTATGCAGGTGTGTGCTTGGTTTGCCTTCTCCCT
TTTTTTTGTCCCTCGGGCGTGTGTATCTTTTCACTTTATCCCCCCCCCCT
CCCCCCAACTCCCCCTAGAAACTCAGTTGGTAGCGAAGCCGCGCGAGTGC
ACTGGCGGTGTAGCACGTGTTTGCCGCGTGTGCCGCGGGGTTTCGCTTCT
GATTTCCAATTTCGATGATTAACATAACATACGATATAGGGAGACGAGAC
TCGGCCGAGTTATAACCGCGTTGCGAGTGGTACCGGCGTTCTACTAATGG
TGTTAAGTGTTGCACGACGGCGAGAGTAAAAGGCCACACACGATCGTGCG
CGCTCGCGCACGCGCACCCCACCACGCGGATATAGTCCTCAGGTGCTGTA
GGATTATTCGAAGAGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12199:1944..2559+

>mRNA_S-dermatodea_contig12199.1373.1 ID=mRNA_S-dermatodea_contig12199.1373.1|Name=mRNA_S-dermatodea_contig12199.1373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig12199:1944..2559+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTGCGCGCGGCGCGTGGTGTGATGATGGAGGTGGCGAGATGCGCCC
AAAGGCTGCAAACGCAATTTTCGAGGGCGGGGAGGAAGTCGAGAGAGAAA
AAAGCTACGAGTATGCAGGTGTGTGCTTGGTTTGCCTTCTCCCTTTTTTT
TGTCCCTCGGGCGTGTGTATCTTTTCACTTTATCCCCCCCCCCTCCCCCC
AACTCCCCCTAGAAACTCAGTTGGTAGCGAAGCCGCGCGAGTGCACTGGC
GGTGTAGCACGTGTTTGCCGCGTGTGCCGCGGGGTTTCGCTTCTGATTTC
CAATTTCGATGAATGGCTGCGCGCGGCGCGTGGTGTGATGATGGAGGTGG
CGAGATGCGCCCAAAGGCTGCAAACGCAATTTTCGAGGGCGGGGAGGAAG
TCGAGAGAGAAAAAAGCTACGAGTATGCAGGTGTGTGCTTGGTTTGCCTT
CTCCCTTTTTTTTGTCCCTCGGGCGTGTGTATCTTTTCACTTTATCCCCC
CCCCCTCCCCCCAACTCCCCCTAGAAACTCAGTTGGTAGCGAAGCCGCGC
GAGTGCACTGGCGGTGTAGCACGTGTTTGCCGCGTGTGCCGCGGGGTTTC
GCTTCTGATTTCCAATTTCGATGA
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