mRNA_S-dermatodea_contig12192.1371.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12192.1371.1
Unique NamemRNA_S-dermatodea_contig12192.1371.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12192.1371.1 vs. uniprot
Match: A0A835YTF2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.780e-6
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 2 
Query:  164 MGDRELSRWVEDKLHDVLGLSDAATAQFIIAAARRTAKA 280
            M DRE++RWV DKLHD+LG SD  TAQFI A A+R   A
Sbjct:    1 MSDREVNRWVSDKLHDILGYSDNTTAQFITALAKRATSA 39
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12192.1371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YTF2_9STRA2.780e-664.10P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12192contigS-dermatodea_contig12192:2442..6435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924236.2440922-CDS-S-dermatodea_contig12192:2441..25621622924236.2440922-CDS-S-dermatodea_contig12192:2441..2562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12192 2442..2562 +
1694079114.7627344-CDS-S-dermatodea_contig12192:2441..25621694079114.7627344-CDS-S-dermatodea_contig12192:2441..2562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12192 2442..2562 +
1622924236.2548313-CDS-S-dermatodea_contig12192:6267..64341622924236.2548313-CDS-S-dermatodea_contig12192:6267..6434Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12192 6268..6434 +
1694079114.771235-CDS-S-dermatodea_contig12192:6267..64341694079114.771235-CDS-S-dermatodea_contig12192:6267..6434Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12192 6268..6434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12192.1371.1prot_S-dermatodea_contig12192.1371.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12192 2442..6434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12192.1371.1

>prot_S-dermatodea_contig12192.1371.1 ID=prot_S-dermatodea_contig12192.1371.1|Name=mRNA_S-dermatodea_contig12192.1371.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
GGAVCVQQARASQGRALRHYFERCRRELLISLSSCWKILEGRPHPTPISG
RTIQHGRQRAEQMGGGQAPRRAGPERRRNGSVHHRGGKADGQSREG
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mRNA from alignment at S-dermatodea_contig12192:2442..6435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12192.1371.1 ID=mRNA_S-dermatodea_contig12192.1371.1|Name=mRNA_S-dermatodea_contig12192.1371.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3994bp|location=Sequence derived from alignment at S-dermatodea_contig12192:2442..6435+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGGAGCGGTATGTGTGCAGCAGGCAAGGGCTAGCCAGGGGAGAGCTTT
GAGGCATTATTTCGAAAGGTGTCGACGCGAGCTCCTGATTTCACTAAGCT
CTTGCTGGAAAATCCTCGAAGGTAATGGAAGTGGCTCTGCTACACACAAG
CACACAAGCGGTTTGAACACCATAATAGCTGCTCGTATCGCAACCGCAAA
GGCAACCTGCTGTTGTTGCAAGTTCGCCAAGCAAGCTCGCTAGCCTGGTA
GCCGCTTGCGATCCACCCCGGCCTGAAACCAGCTTGGTTTTCCTGAGCAA
GAAGGAGTGGACTGCGCAGTTGCCGCAGGGGCGCTGAGAAACAACGCTGT
ACAAGTACAAGCCATTTCTGCCTGTTTGCGTCAATCGTGTCTCTCTGTGC
GGCAGAGCTCAGTGCAACTGGAACACGATACAGCAGGAGTGTGATGCATG
AGAGAGTCGTGTGTGGGGGAGCTTGTCCACATTTGGCAAGGTATTTTGCG
CTCTGCCATAATATCATATGGCACGTTACAACAGCTGATTGCACCCTGCA
TGTGATTCGGCATCTCAACGCGTCTTGGCCTAAGCAATAGGCTGTAAACT
TATGGCCAGGTGTTGCTACAAGTGCACATTATTCATGCAAGTAAAACGCG
CCTACGCGTACCCATGTACAGAGTATGGTGCGTCGCATCGGTTGAGCATC
ATACCGACAGGTGATACATAGTGGTACACAGCAGTCTACAGCAGTGCAAG
TATCCGTCTTCTTTGGGCAAGTGGGCAAGGCTACCCCACAGGGCCCGCTC
GAGGCTTGAGCCCTCGACAGGCGGTTGACTTTGGTCGAATTGTATCATCA
TGATCACCATTCGCCCACAACAGGCGCTCGATATCCTTCGAAGTATCCCC
TGAAGAAACGCGCTGACACGGCTTCCCCCTTGCGACTTGGAAGTCTCTGG
CGTGTCCCGGAAACAACTTGATCGTATGAAATCCTTTTTATGAAATTACC
TTTTACTATTACCTTTTACTATTAGATCAGCCAGCCCTACCTCTTGTCCA
CTTCTACAGTAGTAGTATCATAGTGATGTTCTCCTCATATAACTCAACAC
TTTCCCTTTCATCAAAGCGTGCGTATGCTCCTCAAAAGAGTTCCTCTCCA
ACGCCACGAGCTGATATCCTGTTTCTACATATCGTATACCAGTAGAGTAT
ATATCGAGTGTGGCTAACTGTGGCACCCCGTACCTGACGGAAGGCTGCGA
CTCCGTCATTGTGTACTACACTCCCCAGAGCTCCCCTGTGTGCAGCCTTC
GAGCTTCCTGCTCATTGCAGCAGCAGTGATAGAGCCGTGTACAGCAACCA
ATATTTACTTTGCAAACTGTGTACTCTGTACTGCTGTACAAGTATAGTAG
TATAATAGGATAATAGTAGTCGTCTACCCCCCCACTCTTCTGTATATGTC
TCTTTGTCGCTTCCATTCTGCCCTGAGCTCCCCCGGTGCGCAACCTTTGA
GCCTCCAGCCCACAGCAACAGTAGATCTGTATACAGTCTACCTCACTCTG
TGTTATCTCTGTGTCGTTTGTACACTGCCCAGAGCCCCCCCTGTGCGCAA
CTTTTGAGCCTCATGCCACATGGACCAGCAGTCCATCTACTACTGCCGAT
CCCACCTCACGTGTAACACAATCGCAGGCGCGCGCTCGCGCAGCCATTCC
TATTCGCGCGACAATTTGACCTCATTTAGAAAAAGAGTGGGCCTCAGGGC
TATGACAAAACAAGTTGTATCATGGCGTGGTTGGAAAAGTTTGTGAAGAG
AGGCCGGCAACCGTGGCTGAAGTGTACACATATATATACGTGTACATGTA
CTTTATACGTTTGTTCCCATGTACTCAGTACATCCCTAACTCACGAGCAC
ACTGGTTCAGGGGAAACTGAACGTAGGTACGTCCTTGACTCTCTCAGTAA
GGCATACACATGTGCCGGGGGGGGCTTTAAATGTACAACTAACTACAGGT
GGACTATGATATAATAGTGTGTATACATCGCGCCACAAAACAAACGCCAT
TTCCAAATCGTGTGTCATCATGAGTCCCCGCGTATATGTACCGCCGGTCA
ACAGAAATTGTCGGGGGGTATCCCTCCTGTGATTCTGTACCTGGTACATG
TTTTGGCTTTTTTTTGCCCCTACGCGGGGTGCGGCGTAATTAATGCCTCT
TTGATAAAACGTGACCCGGTATGGAAGGCGATTTCGCCTCGCTTCGCTCG
GCTCAACCTCCCCTCTTTTGCTAACCTTTCCCGCGTCTACAGCATCGCGT
AAACGTGAATTTTCACGTCGACGTGTCTCGTCCTATTTACTATTTACTGC
TAAACACGTTGTTACCCATCTTGATGGTGCCTTGGTTATCCTCCGTGATC
TTGATGGGGTACATCTTCACGTGTAGTCGGCATAATGAACGCCTGCACGT
GGCGAAGGAACACCACTTATTTCAAGGTCTCCGCCAGTGCCACGAATTCC
GATTCCGATGCGACTGAAGCTGTAATTTGTAATTTCCTCTGTCCTTGAAT
ACCAGCTGATTGCTCTTGCTCCTACTGTAGCAGCACTGCTCCTGCTGACG
TTGATCGCCGGGTGTCTGAGCACGTCGCATGGTCTGCGTCGGCATACGCT
AGCATCTGTATCCCACTACAGTTGTCATATCCGCCGTAGGCAGAACCCAG
GCTCCCGGTCCTAAGCACGTACTGCAAGATTTTCTCCGCAGCTTTCTTGT
GTACTGTACAACGCCGGGATTTTCGCACATCTTCGCTGCAAGTCGGACGG
CATCGGCGATATCGGGCCTTGCCATGGTAGCCGCCCACATGAGTGCCCCT
CATTGCCTCCCTGTAAGGAATTTATTTCAACTCATATTTACGTCCTCTGG
GGTTGTCGGTCCGTCCTCCTTTAGAAAGTGGCTTGACTCCCGCTACTCCA
GAGATCATGGTTGTTTTTGATATCCCGAAGCGTTCCGCTATCTTCTGCGC
GTAAATATGTTGTTAACCCTTTTGGTACTAGCCCACTGTTTGGACCGCCG
GTTAGAACGTAATGAGGCGTGCTTGAAGCGGGGCTCTGGGGATCCGCATG
GCTTAAGACGCAGAACTGAGAGAAAACGGAGCCCAAGGGGAAACGGGGTG
TAGCTTGTCAACTGGCATCTAGAGATATTTTAATCGCTTCGGATAGCCCT
AGTACCAAAAGTGAATTTTGAGCATTCTCTCTTCCCTGTTTCGTGTGATG
TGGCAGCCCATGTGTTATTAGTGTTCGGCTTCTCCCATGTCCTTTACCTT
GAATCTCAAACGCGGGTCCGCCAATCATTTGTCCTGCTGTCCGCTCCCTT
TAGTAGCGATTAATTCGTCATCTACGTGGATTGCGGCTATTGATAGTCCT
TCTGCTTCGCCATAAAGGAGTTTTTGAACACACAAAAGGATCGGACCTTA
TTAATAAACGCTTTTGTGTATTAGTAGCGACCTGCGGGGACGGCCACACG
AACAGCTACCGTCGCACTGCCCAATATGCCGCTATAATCAATAAAATAAA
ATAAAATTATATCAAATTAAATCGACAAAAATAAAATAAAATAAAATAAA
ATCAAATCAAATCAAATAAAATCAAATCCATCAATAAAATAAAATCAAAT
CATTAAGTCAATCGATTGGGCTCTCAGCAGTCTCACAGCGCTCTCGCCGA
TTTCTGTCGGGTTTCTACCGTTGTGATAACCAAACAATGAATCCATCAAT
AATCAATCAATACTACTACCGTTATCGACACACAAACAACCCCCCCCGCT
ACCCCCCCAACCCCCCACCCCTCCAGGGCGACCCCACCCCACCCCCATCT
CAGGGAGGACCATCCAGCATGGGCGACAGAGAGCTGAGCAGATGGGTGGA
GGACAAGCTCCACGACGTGCTGGGCCTGAGCGACGCCGCAACGGCTCAGT
TCATCATCGCGGCGGCAAGGCGGACGGCCAAAGCCGGGAAGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12192:2442..6435+

>mRNA_S-dermatodea_contig12192.1371.1 ID=mRNA_S-dermatodea_contig12192.1371.1|Name=mRNA_S-dermatodea_contig12192.1371.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig12192:2442..6435+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGGAGCGGTATGTGTGCAGCAGGCAAGGGCTAGCCAGGGGAGAGCTTT
GAGGCATTATTTCGAAAGGTGTCGACGCGAGCTCCTGATTTCACTAAGCT
CTTGCTGGAAAATCCTCGAAGGGAGGAGCGGTATGTGTGCAGCAGGCAAG
GGCTAGCCAGGGGAGAGCTTTGAGGCATTATTTCGAAAGGTGTCGACGCG
AGCTCCTGATTTCACTAAGCTCTTGCTGGAAAATCCTCGAAGGGCGACCC
CACCCCACCCCCATCTCAGGGAGGACCATCCAGCATGGGCGACAGAGAGC
TGAGCAGATGGGTGGAGGACAAGCTCCACGACGTGCTGGGCCTGAGCGAC
GCCGCAACGGCTCAGTTCATCATCGCGGCGGCAAGGCGGACGGCCAAAGC
CGGGAAGGGGGCGACCCCACCCCACCCCCATCTCAGGGAGGACCATCCAG
CATGGGCGACAGAGAGCTGAGCAGATGGGTGGAGGACAAGCTCCACGACG
TGCTGGGCCTGAGCGACGCCGCAACGGCTCAGTTCATCATCGCGGCGGCA
AGGCGGACGGCCAAAGCCGGGAAGGG
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