mRNA_S-dermatodea_contig12177.1361.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12177.1361.1
Unique NamemRNA_S-dermatodea_contig12177.1361.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Match: D8LTV6_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV6_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.940e-22
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 2 
Query:    2 HVTLVNWTQSYAEDRGMIRAATMLRKKKMARYLTAEALRRGSMDNTTVAIVWLQ 163
            H+TLVNWTQSYAEDRGMIRAATMLRKKKMA YLT EALRRGS DNTTVAIVWLQ
Sbjct:  307 HMTLVNWTQSYAEDRGMIRAATMLRKKKMAGYLTEEALRRGSTDNTTVAIVWLQ 360
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BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Match: A0A6H5KKR9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.520e-22
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 2 
Query:    2 HVTLVNWTQSYAEDRGMIRAATMLRKKKMARYLTAEALRRGSMDNTTVAIVWLQ 163
            H+TLVNWTQSYAEDRGMIRAATMLRKKKMA YLT EALRRGS DNTTVAIVWLQ
Sbjct:  501 HMTLVNWTQSYAEDRGMIRAATMLRKKKMAGYLTEEALRRGSTDNTTVAIVWLQ 554
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BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Match: A0A835Z7U5_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.020e-12
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2 
Query:   11 LVNWTQSYAEDRGMIRAATMLRKKKMARYLTAEALRRGSMDNTTVAIVWLQ 163
            L +WTQ YA+DRGMIRAA M RKKKMARYL  EA+RRG+MDN TV +++ +
Sbjct:  323 LSDWTQRYADDRGMIRAAMMSRKKKMARYLAQEAIRRGTMDNVTVVVMFFR 373
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BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Match: A0A7S1UJR9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJR9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.470e-11
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:    5 VTLVNWTQSYAEDRGMIRAATMLRKKKMARYLTAEALRRGSMDNTTVAIVWLQ 163
            V L  W++ Y++DRG++RAA M RKKKMA+YL  EALRRG+ DN TV I+WL+
Sbjct:  298 VDLRTWSRQYSKDRGLVRAALMSRKKKMAKYLVEEALRRGTFDNITVVILWLK 350
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BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Match: A0A4D9DDA2_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDA2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.400e-11
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:   11 LVNWTQSYAEDRGMIRAATMLRKKKMARYLTAEALRRGSMDNTTVAIVW 157
            + +WT+ +A+DRG+IRAA M RKKKMARYL+ EA RRG+ DN TV +VW
Sbjct:  595 IFDWTKQHADDRGIIRAAMMARKKKMARYLSEEAFRRGTSDNVTVVVVW 643
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BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Match: A0A7S1FWF6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWF6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.840e-10
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:    5 VTLVNWTQSYAEDRGMIRAATMLRKKKMARYLTAEALRRGSMDNTTVAIVWL 160
            +T+ +W+  Y++DR M++AA   R++KMARY+  EALRRGSMDN  V IVWL
Sbjct:  170 MTMSDWSSKYSDDRSMVKAAMTTRRRKMARYVAEEALRRGSMDNICVVIVWL 221
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BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Match: A0A7S2RHS5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHS5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.580e-8
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:   11 LVNWTQSY-AEDRGMIRAATMLRKKKMARYLTAEALRRGSMDNTTVAIVWLQ 163
            + +WT  + + DR MIRAA   RK+KMARYL  EA+RRG+ DNTTV IVWLQ
Sbjct:  539 IADWTALHPSSDRAMIRAAMANRKRKMARYLCEEAMRRGTTDNTTVIIVWLQ 590
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BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Match: A0A024TM43_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TM43_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.140e-6
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:    5 VTLVNWTQSYAEDRGMIRAATMLRKKKMARYLTAEALRRGSMDNTTVAIVWL 160
            V L  W Q Y  D  MI+AA   RK++MA+YLT EAL RG+ DN  V ++WL
Sbjct:  365 VELFEWRQMYKNDSDMIQAALATRKEQMAKYLTQEALFRGTADNVAVVVIWL 416
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BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Match: A0A067CW98_SAPPC (PPM-type phosphatase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CW98_SAPPC)

HSP 1 Score: 54.3 bits (129), Expect = 5.340e-6
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:    5 VTLVNWTQSYAEDRGMIRAATMLRKKKMARYLTAEALRRGSMDNTTVAIVWL 160
            + L  W Q Y  D  MI+A+   RK +MA YL  EAL RG++DN +VA+VWL
Sbjct:  347 IELFEWKQKYRNDTSMIQASRARRKAQMATYLIQEALYRGTVDNVSVAVVWL 398
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BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Match: A0A1V9ZKK9_9STRA (Protein phosphatase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKK9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.840e-5
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 2 
Query:    5 VTLVNWTQSYAEDRGMIRAATMLRKKKMARYLTAEALRRGSMDNTTVAIVWL 160
            + L  W Q Y  D  MI+A+   RK +MA YL  EAL RG+ DN +VA++WL
Sbjct:  347 IELFEWKQKYQSDTSMIKASRARRKAQMATYLIQEALYRGTADNVSVAVLWL 398
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12177.1361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LTV6_ECTSI1.940e-2292.59PPM-type phosphatase domain-containing protein n=1... [more]
A0A6H5KKR9_9PHAE6.520e-2292.59PPM-type phosphatase domain-containing protein n=1... [more]
A0A835Z7U5_9STRA4.020e-1266.67Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A7S1UJR9_9STRA2.470e-1160.38Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9DDA2_9STRA4.400e-1163.27PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S1FWF6_9STRA2.840e-1055.77Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2RHS5_9STRA1.580e-861.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024TM43_9STRA1.140e-651.92PPM-type phosphatase domain-containing protein n=2... [more]
A0A067CW98_SAPPC5.340e-650.00PPM-type phosphatase domain-containing protein n=2... [more]
A0A1V9ZKK9_9STRA1.840e-548.08Protein phosphatase n=1 Tax=Achlya hypogyna TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12177contigS-dermatodea_contig12177:3790..6471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size388
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924234.9083846-CDS-S-dermatodea_contig12177:3791..41181622924234.9083846-CDS-S-dermatodea_contig12177:3791..4118Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12177 3792..4118 -
1694079113.6615524-CDS-S-dermatodea_contig12177:3791..41181694079113.6615524-CDS-S-dermatodea_contig12177:3791..4118Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12177 3792..4118 -
1622924234.9198685-CDS-S-dermatodea_contig12177:6414..64711622924234.9198685-CDS-S-dermatodea_contig12177:6414..6471Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12177 6415..6471 -
1694079113.6701334-CDS-S-dermatodea_contig12177:6414..64711694079113.6701334-CDS-S-dermatodea_contig12177:6414..6471Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12177 6415..6471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12177.1361.1prot_S-dermatodea_contig12177.1361.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12177 3792..6471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12177.1361.1

>prot_S-dermatodea_contig12177.1361.1 ID=prot_S-dermatodea_contig12177.1361.1|Name=mRNA_S-dermatodea_contig12177.1361.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
ARDACELDAELRRRSGHDKGCHDATKEEDGAVPHGRGAAARIHGQHDRGD
RLAPVKHARSKRGSRAAALLSTARSLIVAISVFIFLSVCLPSDMPVGQHG
MSDVLSLVLRRISGVALLISRFVDLLMC
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mRNA from alignment at S-dermatodea_contig12177:3790..6471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12177.1361.1 ID=mRNA_S-dermatodea_contig12177.1361.1|Name=mRNA_S-dermatodea_contig12177.1361.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2682bp|location=Sequence derived from alignment at S-dermatodea_contig12177:3790..6471- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACGTGACGCTTGTGAACTGGACGCAGAGCTACGCAGAAGATCGGGGCA
TGATAAGGTGAAGTTCCATCCCCGCCCCATGTTTGTTTTCCTTCACTTTT
TGTTGGATCGTTTCAGTTTCGTTTCAGTTTCGTTTCAGTTTCGTTTCAGT
TTCGTTTCGTTTCGTTTCAGGTTCGTTTCAATTTCTTTTTTTTGTTTTCA
GTTTTGTTTCGTTTCAGTTCAGTTTCGTTTCGTTTCGTTTCAGTTTCGTT
TCGTTTCGTGTCAGTTTCGTTTCTCTTCGCTTTTTATGTTACTCAACCTT
TTACACTGATGAGGCGAGAACCCGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAGCGTCCAGCGAGGCAGTTCATTTTTTAATA
TTTCATTTTATTTCGTTATTTTTTTCTTTACGAAAAAAAAAACCCGACAA
AAGGTTGTATCGTGTTTTATTTTTGCCGCGGGTGCAACACGGCATACAGT
ATATCGGGCAGTATTGTGTATTGAACAACTTTCTCCTTTTTTGAAACTGT
CAAAACTGAGCCCGCTTCTAGGGCACTATCGCTCGCTTTTGTGGCATTGC
GCGGCCTGTGACGTGAAAGGGTGCATATAGACGTCAAACGTTATATTCAG
AGCCGAGATCCCCTTGTCGGGTGATTTCCTGTTGGAAATTGGATTTAATT
CGTTGTAGCTAATGCTGTGGTAGTGGCGATGATACCGAAATCACGGGCGG
TTAAACTTGTTCACAAATAATAGTTGTAACAAAAACTACGGGGGGGTTAT
CGCCATTCTGTGCGAACGATTTGGGCTTCGTCTCACCGTCGCGCCAGGGC
GTGTCGACGTGGGCGTTGAATAATATGGAAATGCGTTAAGAGAACGGGAT
CGGGGAAATACTTAGTTTTTGTGTTGCTGTGAGATGTGTCTGGTGTGTGT
GTGTGTGTGTGTGTGCGTGCTACCAGGTTCGTCGGACCCCCAACATTAAC
CCTTTTGGGACTAAGGCTGTTTTCGGGTAACTGCTTTCTATTATTATTAA
CCCTTTTGGGACTAAGCCTGGGGACAAAGCCTGTTTTCGGGTGACTGTTG
GCTACCAGAATAGCAACAGGAACCCGAAAACAGCCTTAGTCCCAAAACAA
AAGGGCATATGATAATAGCAAACAGTTACCCGAAAACAGCTTTAGTCCCA
AAAGGGTTAAGGAAATATTAATTGAGGGAGTCTTGATGTCCTAGCCTGGA
CATAAGCTCTCTCTACGGCTGCTGTGGCTGCGTACTTGACAAGACACATC
ATAAGAAATAGCATGCGCTGTTGTGGCTGCTGGGGCCGCGTGATCAGACA
AGATACAGCAGAAAACGCCTGGACCATGTTCTACTAAGGATATTTTCTTT
GGGGCGAACGTGAAATTATCTCAGTTTTGTGTACAGCAAAGTCCACCCGG
GTCCTGTCCTGCCCCGATGAGTTATGGATTGTGCACCTTCTGTGTTCTGT
TTATTTGTAAAAAAATAAAACACAAAACACGATAAAAAAATAAATAAAAA
TGGTGTCTTAAAAAGAAACGCGGGGCGTAATAGCAGTAAAAATGACCTGA
AAGTAAAATGCCGCGCCCCCGGGGATGGCTATCCTCAGGACAGGTCAACA
TTCGATCTAGCTCGCCCTGTGGTGGCAATCCTGAAATCGCGGGGGGCTTA
GCGTGCTCAGCACACTGCAGGGTACCTACACCCTGCAAGCGCGCGTGATT
TTAGCGCCACCGAGCCTTCGCGCCAACGCCAATTCGGGTCAGCGCTTCTC
AGACGTAACCCTGACACCACCATGACTTGTGATATTTATGCAGCCGGAGT
CTCTTGAAGCGCCGCGATTGCTGAGCACCCTTGTAGACACTTTCAGGTCG
ATATTGGTGCCTTTCCTGGTGGCACAACTGCAGCACAGCGCTCGCTTGGG
ACCATGGCGCTGCCCTCCTCGGGTTATAGGCCGCGTTCCTGAAAACATCC
CCGTTTTACGATAACGCCTTCCAACATGTGTATGTGTTTTTTTTTTCTTT
TTTCCTACTGCTGCAACACGGGTGGGTGTTGGCCCCCCACCTCTGTTTCC
GAGAGTTTTGTGTCAATTTCCTTCTTTGTATGCACTATATATATGTATAT
ACTTCGTATATATAGGTAATTCCGTCAGGGTTTTAGTTTTTGTTTCATCC
CTCGATCTATCAACCTGACCACGAGCGGGATCGGCAACCATTGGGTGGGG
ACGGTCGGTTGTATTGATAAGTGTGACAATCAAATCAAATCAAATCAAAT
CAAATCAATCAAATGGCTGAAACGATCGCTGCGGCTCTGAACTTTTGATG
CAGGGCTGCCACGATGCTACGAAAGAAGAAGATGGCGCGGTACCTCACGG
CCGAGGCGCTGCGGCGCGGATCCATGGACAACACGACCGTGGCGATCGTT
TGGCTCCAGTGAAGCATGCGCGCAGCAAGAGAGGAAGCCGAGCCGCAGCT
CTGCTCTCCACCGCTCGGTCTCTCATCGTTGCTATTTCGGTGTTCATCTT
TCTCTCTGTGTGTTTACCAAGTGACATGCCGGTAGGGCAACATGGTATGT
CGGACGTTTTATCGCTGGTTTTGCGTCGAATCAGCGGGGTAGCTCTCTTG
ATATCTCGATTTGTCGATCTCTTGATGTGTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12177:3790..6471-

>mRNA_S-dermatodea_contig12177.1361.1 ID=mRNA_S-dermatodea_contig12177.1361.1|Name=mRNA_S-dermatodea_contig12177.1361.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig12177:3790..6471- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACGTGACGCTTGTGAACTGGACGCAGAGCTACGCAGAAGATCGGGGCA
TGATAAGGCACGTGACGCTTGTGAACTGGACGCAGAGCTACGCAGAAGAT
CGGGGCATGATAAGGGCTGCCACGATGCTACGAAAGAAGAAGATGGCGCG
GTACCTCACGGCCGAGGCGCTGCGGCGCGGATCCATGGACAACACGACCG
TGGCGATCGTTTGGCTCCAGTGAAGCATGCGCGCAGCAAGAGAGGAAGCC
GAGCCGCAGCTCTGCTCTCCACCGCTCGGTCTCTCATCGTTGCTATTTCG
GTGTTCATCTTTCTCTCTGTGTGTTTACCAAGTGACATGCCGGTAGGGCA
ACATGGTATGTCGGACGTTTTATCGCTGGTTTTGCGTCGAATCAGCGGGG
TAGCTCTCTTGATATCTCGATTTGTCGATCTCTTGATGTGTGGCTGCCAC
GATGCTACGAAAGAAGAAGATGGCGCGGTACCTCACGGCCGAGGCGCTGC
GGCGCGGATCCATGGACAACACGACCGTGGCGATCGTTTGGCTCCAGTGA
AGCATGCGCGCAGCAAGAGAGGAAGCCGAGCCGCAGCTCTGCTCTCCACC
GCTCGGTCTCTCATCGTTGCTATTTCGGTGTTCATCTTTCTCTCTGTGTG
TTTACCAAGTGACATGCCGGTAGGGCAACATGGTATGTCGGACGTTTTAT
CGCTGGTTTTGCGTCGAATCAGCGGGGTAGCTCTCTTGATATCTCGATTT
GTCGATCTCTTGATGTGT
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