mRNA_S-dermatodea_contig12177.1359.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12177.1359.1
Unique NamemRNA_S-dermatodea_contig12177.1359.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12177.1359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12177contigS-dermatodea_contig12177:2843..3397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size557
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924234.9568825-CDS-S-dermatodea_contig12177:2842..31661622924234.9568825-CDS-S-dermatodea_contig12177:2842..3166Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12177 2843..3166 +
1694079113.6789505-CDS-S-dermatodea_contig12177:2842..31661694079113.6789505-CDS-S-dermatodea_contig12177:2842..3166Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12177 2843..3166 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924234.9673269-UTR-S-dermatodea_contig12177:3166..33971622924234.9673269-UTR-S-dermatodea_contig12177:3166..3397Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12177 3167..3397 +
1694079113.6884592-UTR-S-dermatodea_contig12177:3166..33971694079113.6884592-UTR-S-dermatodea_contig12177:3166..3397Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12177 3167..3397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12177.1359.1prot_S-dermatodea_contig12177.1359.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12177 2843..3166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12177.1359.1

>prot_S-dermatodea_contig12177.1359.1 ID=prot_S-dermatodea_contig12177.1359.1|Name=mRNA_S-dermatodea_contig12177.1359.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
SSKALQTVKNSVCLRSSQQDHQTFPERSSTFFLSSLSRVHVKHLAQEHAA
FVHLSFPRLPRLTPTPPLPPLLRLSVHENKANLPSTRARAREFTPRRKTT
AFPFPYA*
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mRNA from alignment at S-dermatodea_contig12177:2843..3397+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12177.1359.1 ID=mRNA_S-dermatodea_contig12177.1359.1|Name=mRNA_S-dermatodea_contig12177.1359.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=555bp|location=Sequence derived from alignment at S-dermatodea_contig12177:2843..3397+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCATCGAAAGCGCTACAAACAGTCAAAAACAGTGTTTGTTTACGGAGTTC
ACAACAGGATCACCAAACATTTCCTGAACGCTCGAGCACCTTCTTCTTAT
CCTCTCTCTCGCGTGTCCATGTCAAGCACTTAGCACAAGAACACGCCGCA
TTCGTCCATTTATCCTTTCCTCGCCTCCCACGCCTAACGCCCACGCCGCC
GCTGCCACCACTGCTTCGACTATCCGTACACGAAAACAAAGCAAATCTAC
CCAGCACGCGCGCGCGCGCCCGCGAGTTCACGCCCAGGCGAAAAACGACA
GCGTTTCCTTTCCCTTATGCATAACGGGCGGCAACGAAAGCCCGACGAGA
CTGATTTTACTCATCTATTACCACCAGCAGGCGATAAAGCGGAAAATTCG
AGCGCACCCCACAACGCATGTACATGCCGACCGCAATAGATTATATAACG
AGAGCTCACAAAACGCCTCCTTTCTCGATCTAAAACTAGCGGCACAAAAA
CGATGGGATACTACCGATTCGTGAGACCACCCCGTGGTCCCGATTTCGAC
CCGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12177:2843..3397+

>mRNA_S-dermatodea_contig12177.1359.1 ID=mRNA_S-dermatodea_contig12177.1359.1|Name=mRNA_S-dermatodea_contig12177.1359.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig12177:2843..3397+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCATCGAAAGCGCTACAAACAGTCAAAAACAGTGTTTGTTTACGGAGTTC
ACAACAGGATCACCAAACATTTCCTGAACGCTCGAGCACCTTCTTCTTAT
CCTCTCTCTCGCGTGTCCATGTCAAGCACTTAGCACAAGAACACGCCGCA
TTCGTCCATTTATCCTTTCCTCGCCTCCCACGCCTAACGCCCACGCCGCC
GCTGCCACCACTGCTTCGACTATCCGTACACGAAAACAAAGCAAATCTAC
CCAGCACGCGCGCGCGCGCCCGCGAGTTCACGCCCAGGCGAAAAACGACA
GCGTTTCCTTTCCCTTATGCATAATCATCGAAAGCGCTACAAACAGTCAA
AAACAGTGTTTGTTTACGGAGTTCACAACAGGATCACCAAACATTTCCTG
AACGCTCGAGCACCTTCTTCTTATCCTCTCTCTCGCGTGTCCATGTCAAG
CACTTAGCACAAGAACACGCCGCATTCGTCCATTTATCCTTTCCTCGCCT
CCCACGCCTAACGCCCACGCCGCCGCTGCCACCACTGCTTCGACTATCCG
TACACGAAAACAAAGCAAATCTACCCAGCACGCGCGCGCGCGCCCGCGAG
TTCACGCCCAGGCGAAAAACGACAGCGTTTCCTTTCCCTTATGCATAA
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