mRNA_S-dermatodea_contig1217.1354.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1217.1354.1
Unique NamemRNA_S-dermatodea_contig1217.1354.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Match: A0A6H5KNT1_9PHAE (Carrier domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNT1_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 7.110e-59
Identity = 100/126 (79.37%), Postives = 116/126 (92.06%), Query Frame = 1
Query:   82 SLLEALDFWAEQSPSKTAMTFVDDAGTDIDSLTYSDVQRRSSALASHLLEGLGLTRGSTCLLVYTPSLDFTVAYLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYAKKV 459
            SLL A+D+WAE++PSKTA+TF+DDAG ++D+LTYS V RRS+ALASHLL+ LGL +GSTCLLVY P LDFTVAYLACLRAGVIAVPC+PPDPRRLKKDL MF AIQGSSGATVALT+R+YNYAKK+
Sbjct:    6 SLLGAIDYWAEKTPSKTALTFLDDAGAEVDALTYSSVLRRSNALASHLLDKLGLVKGSTCLLVYPPCLDFTVAYLACLRAGVIAVPCYPPDPRRLKKDLHMFKAIQGSSGATVALTNRNYNYAKKM 131          
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Match: A0A6A5ALQ8_9STRA (AMP-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ALQ8_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.070e-41
Identity = 77/141 (54.61%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   64 MAKRSGSLLEALDFWAEQSPSKTAMTFVDDAGTDIDSLTYSDVQRRSSALASHLL-------EGLGLTRGSTCLLVYTPSLDFTVAYLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYAKKVCA 465
            M     ++L  LD WA   P K    FVDD G   DS+TY DVQ RSS LA  +L       +GLGL++G   LLVY P LDF VA+LACLRAGV+AVP +PPDPR+L+KD+ MFT +  ++GA VALT+ +YNYAKKV A
Sbjct:    1 MIMADNTVLGRLDHWATVQPKKNLFAFVDDNGQVTDSVTYDDVQSRSSNLAKWMLTSPSVSSKGLGLSKGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKDIAMFTTVCSNAGAKVALTNSTYNYAKKVVA 141          
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Match: A0A7S2HQ97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ97_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.810e-40
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 1
Query:   58 TAMAKRSGSLLEALDFWAEQSPSKTAMTFVDDAGTDIDSLTYSDVQRRSSALASHLL-----EGLGLTRGSTCLLVYTPSLDFTVAYLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYAKKV 459
            T M+    +LLEALD W++  P K   TF+DD GT++D+LTY D+  +S+ALA HLL      G GL  G   LLVY PSLDF  A+ ACLRAG+IAVP FPPD R+ KKDL MF+AIQ SSGA VALT++++NYAKK+
Sbjct:    3 TEMSGSGRTLLEALDHWSKVQPDKLLHTFLDDHGTEVDTLTYKDLLDKSAALAQHLLAPTRQNGAGLKPGDRALLVYLPSLDFITAFYACLRAGIIAVPVFPPDVRKAKKDLYMFSAIQSSSGALVALTNKTFNYAKKL 141          
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Match: A0A7S2HQA0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQA0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.230e-40
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 1
Query:   58 TAMAKRSGSLLEALDFWAEQSPSKTAMTFVDDAGTDIDSLTYSDVQRRSSALASHLL-----EGLGLTRGSTCLLVYTPSLDFTVAYLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYAKKV 459
            T M+    +LLEALD W++  P K   TF+DD GT++D+LTY D+  +S+ALA HLL      G GL  G   LLVY PSLDF  A+ ACLRAG+IAVP FPPD R+ KKDL MF+AIQ SSGA VALT++++NYAKK+
Sbjct:    3 TEMSGSGRTLLEALDHWSKVQPDKLLHTFLDDHGTEVDTLTYKDLLDKSAALAQHLLAPTRQNGAGLKPGDRALLVYLPSLDFITAFYACLRAGIIAVPVFPPDVRKAKKDLYMFSAIQSSSGALVALTNKTFNYAKKL 141          
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Match: A0A6G0XHZ7_9STRA (Carrier domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHZ7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.420e-39
Identity = 78/143 (54.55%), Postives = 96/143 (67.13%), Query Frame = 1
Query:   52 PPTAMAKRSGSLLEALDFWAEQSPSKTAMTFVDDAGTDIDSLTYSDVQRRSSALASHLL-------EGLGLTRGSTCLLVYTPSLDFTVAYLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYAKKV 459
            P +++ K   +LLE LD W    P K    FVDD G  +DSLTY DV  RSS LA  L+       +GLGL RG   LLVY P LDF V +LACLRAGV+AVP +PPDPR+L+KD+ MF  +  ++GA VALT++SYNYAKKV
Sbjct:    8 PQSSIFKMEKTLLERLDHWTSHHPDKNLYEFVDDNGRVVDSLTYKDVHARSSNLAKWLVTSPNVSSKGLGLARGERVLLVYPPGLDFIVTFLACLRAGVVAVPVYPPDPRKLRKDIVMFATVCSNTGAKVALTNKSYNYAKKV 150          
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Match: W4FD50_9STRA (Carrier domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FD50_9STRA)

HSP 1 Score: 146 bits (368), Expect = 8.590e-38
Identity = 77/141 (54.61%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   64 MAKRSGSLLEALDFWAEQSPSKTAMTFVDDAGTDIDSLTYSDVQRRSSALASHLL-------EGLGLTRGSTCLLVYTPSLDFTVAYLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYAKKVCA 465
            M     ++L  LD WA   P K    FVDD G   DS+TY DVQ RSS LA  +L       +GLGL++G   LLVY P LDF VA+LACLRAGV+AVP +PPDPR+L+KD+ MFT +  ++GA VALT+ +YNYAKKV A
Sbjct:    1 MIMADNTVLGRLDHWATVQPKKNLFAFVDDNGQVTDSVTYDDVQSRSSNLAKWMLTSPSVSSKGLGLSKGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKDIAMFTTVCSNAGAKVALTNSTYNYAKKVVA 141          
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Match: A0A024U0U6_9STRA (Carrier domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0U6_9STRA)

HSP 1 Score: 143 bits (361), Expect = 7.280e-37
Identity = 74/132 (56.06%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   85 LLEALDFWAEQSPSKTAMTFVDDAGTDIDSLTYSDVQRRSSALASHLL-------EGLGLTRGSTCLLVYTPSLDFTVAYLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYAKKV 459
            +L  LD WA   P K    FVDD G   DSL Y DV  RS+ LA  +L       +GLGL+RG   LLVY P LDF VA+LACLRAGV+AVP +PPDPR+L+KD+ MFT +  +SGA +ALT+ +YNYAKKV
Sbjct:    5 VLGRLDHWAAHQPKKNLFAFVDDNGRVTDSLLYEDVHTRSANLAKWMLTSPSVSSQGLGLSRGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKDIVMFTTVCSNSGAKIALTNSAYNYAKKV 136          
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Match: A0A7S1C448_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C448_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.590e-36
Identity = 73/128 (57.03%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   85 LLEALDFWAEQSPSKTAMTFVDDAGTDIDSLTYSDVQRRSSALASHLL----EGLGLTRGSTCLLVYTPSLDFTVAYLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYAKK 456
            LL AL  WA   P K   T++ D G +   LTY DV+ ++  LA H+L    EGLG+ +G   LLVY PSLDF VA+LACLRAGV+AVP +PPDPRRLKK++ MF +IQ SSGA VALTS+ YN+AK+
Sbjct:   19 LLPALRHWASTQPDKVLFTYLGDDGEETRRLTYGDVEAQTRRLAQHILSNTAEGLGVGQGDRVLLVYPPSLDFIVAFLACLRAGVVAVPVYPPDPRRLKKNMYMFASIQASSGARVALTSKQYNWAKR 146          
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Match: A0A835Z9C9_9STRA (AMP-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9C9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.030e-34
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   82 SLLEALDFWAEQSPSKTAMTFVDDAGTDIDSLTYSDVQRRSSALASHLLEGLGLTRGSTCLLVYTPSLDFTVAYLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYA 450
            S+LEALD WA  +PSK    F+DD G    + T+  +Q  S ++A HL   L L +G   LLVY PSLDF VA+L CL AG++AVP +PPDP +L++DL  F A+  SSGA+VALTS +Y++A
Sbjct:    2 SVLEALDHWAAATPSKAVFIFLDDQGNSTCTHTFLSLQAASRSVADHLTGPLQLRKGDRALLVYPPSLDFIVAFLGCLAAGIVAVPVYPPDPSKLRQDLVAFAAVAASSGASVALTSSAYSHA 124          
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Match: A0A485LHG9_9STRA (Aste57867_21441 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHG9_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.660e-33
Identity = 67/132 (50.76%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   85 LLEALDFWAEQSPSKTAMTFVDDAGTDIDSLTYSDVQRRSSALASHLL-------EGLGLTRGSTCLLVYTPSLDFTVAYLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYAKKV 459
            +L  LD W    P K    FVDD G   +SL Y DV  RS+ +A  ++       +GLGL RG   LLV+ P LDF VA+LACLRAGV+AVP +PPDPR+++KD+ MFT +  ++GA +ALT+ +YNYAKKV
Sbjct:    8 VLGRLDHWHATQPDKNLFAFVDDNGRVTESLKYKDVHARSTNMAKWMVTNPSVSSKGLGLARGDKVLLVFPPGLDFIVAFLACLRAGVVAVPVYPPDPRKIRKDIVMFTTVCSNAGAKIALTNSTYNYAKKV 139          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1217.1354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNT1_9PHAE7.110e-5979.37Carrier domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6A5ALQ8_9STRA2.070e-4154.61AMP-binding domain-containing protein n=1 Tax=Apha... [more]
A0A7S2HQ97_9STRA1.810e-4057.55Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2HQA0_9STRA2.230e-4057.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0XHZ7_9STRA6.420e-3954.55Carrier domain-containing protein n=1 Tax=Aphanomy... [more]
W4FD50_9STRA8.590e-3854.61Carrier domain-containing protein n=2 Tax=Aphanomy... [more]
A0A024U0U6_9STRA7.280e-3756.06Carrier domain-containing protein n=1 Tax=Aphanomy... [more]
A0A7S1C448_9STRA1.590e-3657.03Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A835Z9C9_9STRA1.030e-3451.22AMP-binding domain-containing protein (Fragment) n... [more]
A0A485LHG9_9STRA3.660e-3350.76Aste57867_21441 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1217contigS-dermatodea_contig1217:21592..22056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.8
Seed ortholog evalue7.1e-51
Seed eggNOG ortholog2880.D8LBI2
GOsGO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009273,GO:0009987,GO:0042546,GO:0044085,GO:0044238,GO:0071554,GO:0071704,GO:0071766,GO:0071840,GO:1901576
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0318@1,KOG3628@2759
Ec32 ortholog descriptionAcyl carrier protein-like
Ec32 orthologEc-27_003890.1
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924234.609813-CDS-S-dermatodea_contig1217:21591..220561622924234.609813-CDS-S-dermatodea_contig1217:21591..22056Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1217 21592..22056 +
1694079113.4568076-CDS-S-dermatodea_contig1217:21591..220561694079113.4568076-CDS-S-dermatodea_contig1217:21591..22056Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1217 21592..22056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1217.1354.1prot_S-dermatodea_contig1217.1354.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1217 21592..22056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1217.1354.1

>prot_S-dermatodea_contig1217.1354.1 ID=prot_S-dermatodea_contig1217.1354.1|Name=mRNA_S-dermatodea_contig1217.1354.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=155bp
QQLPPIHSRTSGSPRPDPPTAMAKRSGSLLEALDFWAEQSPSKTAMTFVD
DAGTDIDSLTYSDVQRRSSALASHLLEGLGLTRGSTCLLVYTPSLDFTVA
YLACLRAGVIAVPCFPPDPRRLKKDLDMFTAIQGSSGATVALTSRSYNYA
KKVCA
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mRNA from alignment at S-dermatodea_contig1217:21592..22056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1217.1354.1 ID=mRNA_S-dermatodea_contig1217.1354.1|Name=mRNA_S-dermatodea_contig1217.1354.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=465bp|location=Sequence derived from alignment at S-dermatodea_contig1217:21592..22056+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCAACTCCCACCCATCCATTCCCGCACCAGTGGTAGTCCACGACCAGA TCCGCCCACAGCCATGGCAAAACGCAGCGGTAGCCTCCTCGAGGCGCTCG ACTTCTGGGCCGAGCAGAGCCCTTCCAAGACGGCCATGACCTTCGTTGAC GACGCGGGCACGGACATCGACAGCTTGACCTACTCCGACGTCCAGCGGCG CTCGAGCGCACTAGCGTCCCACCTCCTTGAGGGCCTCGGCCTGACGAGAG GCTCCACGTGCCTTCTCGTGTATACACCGTCCTTGGACTTCACCGTGGCG TACCTGGCGTGCCTCCGAGCTGGGGTGATTGCCGTGCCGTGCTTTCCCCC CGACCCGCGGAGGCTCAAGAAGGATCTTGACATGTTCACGGCTATCCAGG GGTCGTCGGGCGCCACGGTGGCGCTGACGAGCCGCAGCTACAACTACGCC AAGAAGGTGTGTGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1217:21592..22056+

>mRNA_S-dermatodea_contig1217.1354.1 ID=mRNA_S-dermatodea_contig1217.1354.1|Name=mRNA_S-dermatodea_contig1217.1354.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at S-dermatodea_contig1217:21592..22056+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCAACTCCCACCCATCCATTCCCGCACCAGTGGTAGTCCACGACCAGA
TCCGCCCACAGCCATGGCAAAACGCAGCGGTAGCCTCCTCGAGGCGCTCG
ACTTCTGGGCCGAGCAGAGCCCTTCCAAGACGGCCATGACCTTCGTTGAC
GACGCGGGCACGGACATCGACAGCTTGACCTACTCCGACGTCCAGCGGCG
CTCGAGCGCACTAGCGTCCCACCTCCTTGAGGGCCTCGGCCTGACGAGAG
GCTCCACGTGCCTTCTCGTGTATACACCGTCCTTGGACTTCACCGTGGCG
TACCTGGCGTGCCTCCGAGCTGGGGTGATTGCCGTGCCGTGCTTTCCCCC
CGACCCGCGGAGGCTCAAGAAGGATCTTGACATGTTCACGGCTATCCAGG
GGTCGTCGGGCGCCACGGTGGCGCTGACGAGCCGCAGCTACAACTACGCC
AAGAAGGTGTGTGCACAGCAACTCCCACCCATCCATTCCCGCACCAGTGG
TAGTCCACGACCAGATCCGCCCACAGCCATGGCAAAACGCAGCGGTAGCC
TCCTCGAGGCGCTCGACTTCTGGGCCGAGCAGAGCCCTTCCAAGACGGCC
ATGACCTTCGTTGACGACGCGGGCACGGACATCGACAGCTTGACCTACTC
CGACGTCCAGCGGCGCTCGAGCGCACTAGCGTCCCACCTCCTTGAGGGCC
TCGGCCTGACGAGAGGCTCCACGTGCCTTCTCGTGTATACACCGTCCTTG
GACTTCACCGTGGCGTACCTGGCGTGCCTCCGAGCTGGGGTGATTGCCGT
GCCGTGCTTTCCCCCCGACCCGCGGAGGCTCAAGAAGGATCTTGACATGT
TCACGGCTATCCAGGGGTCGTCGGGCGCCACGGTGGCGCTGACGAGCCGC
AGCTACAACTACGCCAAGAAGGTGTGTGCA
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