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Homology
BLAST of mRNA_S-dermatodea_contig1217.1353.1 vs. uniprot
Match: D8LBI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI1_ECTSI) HSP 1 Score: 579 bits (1493), Expect = 2.550e-199 Identity = 352/547 (64.35%), Postives = 404/547 (73.86%), Query Frame = 3
Query: 234 MMRKGAHWAIAYAKAQHGCANG--GCRVATSGARAWLSGVPGGENDSNEDATPAETKLAFASTVYGKDPASGIVPTAAEAAAVDILKRAATAKPS--GLPASKSHDPRAMFDSALSQQAEDGKASGGIKRDVATDTPDATRVAFRATAYGKDGQAAAELSAEEAAEVGALRSRAPGSAAGYAAAAAAPVHDGRNMFDSDLTHSAGDTPASHTIKRDVAADTPDATRVAFRASAYGKDPQAAAALSAQEAADVDSLRKSAVARGSGYAADAAPIHDSRNMFDSDLSHGAGTAAASDTIKRDVTADTPDATRVAFRASDYGKDPQAAAALSAQEAAEVDVLLQNAQRGGGDAAAGAAPIHDSRNMFDSDFVHGAGDSEASDAIKREVVADTPEVTRLVFGGSDYGKDPHMKAHTAEKQAELDALAAQTMRQTAEMARSRRSQAPVHHDRSMFDSDLTQGAGAVRESGAIKRNVEADTPALTRLSFFGSTYGDGDGVAEEQMGAD-AEALAAKQTKGAKLATVGRGARKSKVHDTKKAMADDEYSAAGSE 1859
M+R+G YA++Q CA G A +G RAWLS GG++ ++D TP +TKLAF+S+VYGKDPASG PTA EAAA LKR A A + G A+ HD R MFDS+LSQQAEDGK SG IKRDVA DTPDATRVAF ATAYGKD +AAA LSA+EA EV ALR+RA G G A AAAAP+HD RNMFDSDLT AG T A IKRDV DTPDATRVAFRASAYGKDPQ AAALS QEAA+V++LR A RG AA AAP+HDSR+MFDSDL+ GAG+ SD+IKR+V+ DTPDATRVAFRAS YGKD QAAAALS QEAAEVD L A G G ++A AAP+HDSR+MFDSD GAG + SD+IKR V A+TPE TRLVF GSDYGKDP ++ +K+AE+ ALA + T A AP+HHDRSMFDSDL +GAGA RES AIKR+VE TPALTRLSFFGSTYGD D + + AD A+ALA KQ KGAKLA VG G + +KVH+T+KAMADDEYS AGSE
Sbjct: 1 MLRRGIFRVAVYARSQKTCAAGVKNLPAAAAGTRAWLSATSGGDSSDSDDVTPPKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREAEAGTAREGAAAAPVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALSAQEAEEVEALRARAKGD--GVAGAAAAPLHDRRNMFDSDLTQGAGSTQAFDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEALRMRAQGRG---AAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKREVSGDTPDATRVAFRASVYGKDGQAAAALSEQEAAEVDELRVRAH-GAGASSADAAPVHDSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRSVDNSEKKKAEIAALAERVGAGTPAAAA-----APIHHDRSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGSTYGDDDPGSNK---ADHAQALAEKQKKGAKLARVGAGVQSAKVHNTEKAMADDEYSQAGSE 533
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-27_003900.1 |
| Exons | 3 |
| Model size | 1940 |
| Cds size | 1629 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1217.1353.1 >prot_S-dermatodea_contig1217.1353.1 ID=prot_S-dermatodea_contig1217.1353.1|Name=mRNA_S-dermatodea_contig1217.1353.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=543bp
MMRKGAHWAIAYAKAQHGCANGGCRVATSGARAWLSGVPGGENDSNEDAT
PAETKLAFASTVYGKDPASGIVPTAAEAAAVDILKRAATAKPSGLPASKS
HDPRAMFDSALSQQAEDGKASGGIKRDVATDTPDATRVAFRATAYGKDGQ
AAAELSAEEAAEVGALRSRAPGSAAGYAAAAAAPVHDGRNMFDSDLTHSA
GDTPASHTIKRDVAADTPDATRVAFRASAYGKDPQAAAALSAQEAADVDS
LRKSAVARGSGYAADAAPIHDSRNMFDSDLSHGAGTAAASDTIKRDVTAD
TPDATRVAFRASDYGKDPQAAAALSAQEAAEVDVLLQNAQRGGGDAAAGA
APIHDSRNMFDSDFVHGAGDSEASDAIKREVVADTPEVTRLVFGGSDYGK
DPHMKAHTAEKQAELDALAAQTMRQTAEMARSRRSQAPVHHDRSMFDSDL
TQGAGAVRESGAIKRNVEADTPALTRLSFFGSTYGDGDGVAEEQMGADAE
ALAAKQTKGAKLATVGRGARKSKVHDTKKAMADDEYSAAGSE* back to topmRNA from alignment at S-dermatodea_contig1217:17568..21405- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1217.1353.1 ID=mRNA_S-dermatodea_contig1217.1353.1|Name=mRNA_S-dermatodea_contig1217.1353.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3838bp|location=Sequence derived from alignment at S-dermatodea_contig1217:17568..21405- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAGGCCCCCGCGAGTTGGTTCCTGTTCCTGCTGCTGCTCTGCCGCCTGG
ACAGCAGTGTGGAAAACGGTTTGGTGTTGGTATCCTGCTGGGCTAGCAAG
CCAAGGTGAGAGCCGATTTGGGTGCCAGCCGTCCCACGTCGTAGTGAAGT
TGTATGTGCGCGGGGGCGGATTCCTCTGTGCCCGCTTGTGAAGACGCACG
GTGGTACAGCAGTATCACGATCAATCAGCAGTCACAATGTAAATGAGTTT
TGCGTTGCGCGAGGTTCTCTCTGCATGCTTGGGGTGACAGCGCTGCGGTT
GAAGCACTAGGACTCCGCAGTCCGTGCCCAGCCAGAAGGTGGTCGAAGAT
TCCGTGCTTGGAACTTCCCACGCTATAACCCACTCGCCCCGCGCTTGCTA
TAGATGGTGCACACATGTCGATCCTGATAGTGATATTATCAGCACTCCTC
CTGTGGTGCGGTCGGTGAGGCCGCGAGGCAAGGGAGGATTGTGAGAGAAT
ACAGTATGAGGGCATGAGTCCTTCCTTGTTTGCCTTGTGCCTTGTCTCCA
AAATGAGAGCGTATTTGTGTATTCGACATGCTGCAATACTTGTAGAAGGT
GGGGCGTGTGCTATGATATTTTGTGAGAGCGCAGCCCAACTCCTGGGATC
ATGTGAAGTCTAACGAGCAGCTCGATGAACGCCGAGGAGACAGGGACGAC
ATGTCATGCAAAATGCAAAACAGCGAAACCACAGCTACAACACCTACAGA
ACAGACACCACAGATACGTACCAGGTATCGTACAGAGACGCATCAATGTG
ATACGATACGTAGTTCAGAGTGTGCTTTACAGACAGTCGCAAGCATGAGC
GTATTGTCCATGAACCACAGCGCCCTTCCCTCTTCCTGTTGACGACCCCG
TCCCCGTTCCCGATCCCGATCCTCTCCCCCCCCCCCCTCCCCTGACTTGA
TCGCTGCTCATGTTGGCTGTGGTTCCGTAGAAACAAGCCGCGCTCTCTCT
CTCCCTCTGGTTGTTCACGAAGAACAAGAACAATAACAAGATATACAACA
ACAGCAGTACTATAATAGCAACAGCTACGACACCAACAGCTTGTTTCACT
TCGCGAGCATGATGCGAAAAGGGGCCCATTGGGCCATCGCCTACGCCAAG
GCGCAGCACGGGTGCGCCAATGGAGGGTGCCGCGTCGCCACTTCCGGGGC
GAGGGCGTGGCTCTCCGGCGTGCCGGGAGGAGAGAACGACAGCAACGAGG
ACGCGACCCCGGCCGAGACGAAGCTCGCGTTCGCATCCACCGTGTACGGC
AAGGACCCGGCCTCCGGGATCGTGCCCACCGCCGCGGAGGCCGCCGCCGT
GGACATTCTAAAGCGGGCGGCGACGGCCAAGCCAAGCGGCTTGCCCGCCT
CGAAGAGTCACGACCCGCGAGCGATGTTCGACTCCGCTCTGTCTCAGCAA
GCCGAGGACGGCAAGGCATCCGGCGGCATTAAGCGCGACGTCGCGACGGA
CACGCCCGACGCCACGCGGGTAGCCTTCCGGGCGACGGCCTACGGGAAGG
ACGGGCAGGCAGCCGCTGAGCTCTCGGCGGAGGAGGCCGCGGAGGTGGGG
GCGTTGCGGTCGAGGGCGCCGGGGTCCGCCGCGGGCTACGCCGCGGCCGC
CGCGGCGCCGGTTCACGACGGCCGGAACATGTTCGACTCCGACCTTACGC
ACAGCGCCGGCGACACGCCGGCTTCCCACACCATCAAGCGCGACGTCGCG
GCGGATACGCCCGATGCCACGCGGGTGGCGTTCCGAGCGTCGGCGTACGG
GAAGGACCCTCAGGCGGCCGCGGCGCTCTCCGCGCAGGAGGCGGCGGACG
TGGACAGCTTGCGAAAGAGTGCGGTGGCACGCGGCAGTGGCTACGCTGCA
GACGCCGCGCCCATCCACGACAGCCGGAACATGTTCGACTCGGACCTCTC
GCACGGCGCCGGCACCGCAGCGGCGTCCGATACCATCAAGCGCGACGTTA
CCGCGGACACGCCGGATGCCACGCGAGTTGCGTTCCGCGCGTCAGACTAC
GGGAAGGATCCTCAGGCGGCCGCTGCGCTTTCGGCGCAAGAGGCGGCGGA
AGTGGACGTGTTGCTGCAGAACGCCCAGCGCGGCGGCGGCGACGCCGCGG
CCGGCGCGGCCCCCATCCACGACAGCCGGAACATGTTCGACTCGGACTTT
GTGCACGGCGCGGGTGACTCCGAGGCGTCAGACGCCATCAAGCGCGAGGT
GGTGGCCGACACGCCGGAAGTTACTCGGCTCGTGTTCGGGGGCTCAGACT
ACGGCAAGGATCCGCATATGAAGGCCCACACGGCGGAAAAGCAGGCGGAG
TTGGACGCCCTCGCCGCTCAGACGATGCGCCAGACCGCGGAGATGGCGAG
ATCCAGGCGCTCGCAGGCCCCCGTGCACCACGACAGGTCGATGTTCGACT
CGGATTTGACGCAGGGGGCCGGGGCCGTGAGGGAATCCGGGGCCATCAAG
CGGAACGTCGAGGCAGACACCCCGGCATTGACCCGGCTCAGTTTTTTCGG
GAGCACCTGTGAGTTTTGCTGCGCCTTTTTCTTGTATATAATAGCGTTGT
TGGGTAAATCCGAATATTTTGTTATAGTAGCATGTCCGCCAAGTCTCGAA
GATAGCGAAAGCGCTTTTATTTGGTCAAGCGTGGGTCCCGAACGAAAGGT
GCGTGTTCGATTATCAGGTAAAAGTACCTTGCTTGTGTGCAGGCGGGCGA
GGTGCTATTACAGCCTTCGCGCGTAAATTTCGGCTAATCAGGGGAGCGGC
ATGGCTTTCGCAAAATACTAATATAACAGGCACACCGAGCATCGTGTAGT
AATGGAGGGGAGCACACTTGCGGCGTAGGGTGGTTACTGTGGAATGGTTG
CAACTAGCGTAGAGTACGATGTCGCTGACGCCGCCAGGGCATTCCCAAAC
TACCGGTGGTTGTTGCACGTATCTCAATGGTCGAGCCGAGCCTATGCCGC
CGGCGCTTGGAGTTTGAGTTTAGCGGCGCCGGGGCGGTTCCCTGTCCGCG
GGAGTTACTGTAGTTTCTGCCACCAACGTAAGGCCGTCGAGCCAGAGAGA
AACAGACGCCGTGAATGCTGTCGTCCATCGACCGAGTCGAACTAACCCCC
GGTCGCGACTCCTCTCAATGTCCTACCCTATTGTCATGCGCGCGAGCAAC
TCTGTTCGCAACACCCACCCACCCACCCCCGTCTCAATAATGGGAGATGA
TATGAAGCGGCCGTCAAAGGCGAGAATTGAGGTATTAATGGATAGAATAG
GAAGTAATAAAAATCGAGCCACTTTTTTTGGCAAAAGGAGGAAGGAACGA
TTTGCCATATGAATCAATCCTGTGGGAACAACGCTCCGTCCTCCCGAGCG
AGGACGCCGTGGTCAATGGCCTGGCCTTACAGTTAAGGCATGTATAGCTT
TAGTACGCCTCCCCGCCCCACGTCATCGTCACGGTCACACATGACCTCCC
CTCTTGCCGATCACCTTGTTTCCCCTCGCGCCTCCTTCGTGCTTCCGCCG
CATCACCGCGCCCCGAAACACGGAAAATCAGACGGGGACGGGGACGGGGT
CGCCGAGGAACAAATGGGCGCCGATGCCGAAGCGTTGGCGGCGAAGCAGA
CGAAAGGCGCCAAGCTTGCCACGGTCGGGCGCGGGGCGCGCAAGTCCAAG
GTTCACGACACGAAGAAAGCAATGGCGGATGACGAGTACTCGGCGGCGGG
ATCGGAGTGATTTACGTTTGTCGCGATGCTACTCTAACCATTAGGGCAGA
TCGTTTACTGTTATCCGTTTTTGCGTGTTGGGAGGGGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1217:17568..21405- >mRNA_S-dermatodea_contig1217.1353.1 ID=mRNA_S-dermatodea_contig1217.1353.1|Name=mRNA_S-dermatodea_contig1217.1353.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3258bp|location=Sequence derived from alignment at S-dermatodea_contig1217:17568..21405- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGCGAAAAGGGGCCCATTGGGCCATCGCCTACGCCAAGGCGCAGCA
CGGGTGCGCCAATGGAGGGTGCCGCGTCGCCACTTCCGGGGCGAGGGCGT
GGCTCTCCGGCGTGCCGGGAGGAGAGAACGACAGCAACGAGGACGCGACC
CCGGCCGAGACGAAGCTCGCGTTCGCATCCACCGTGTACGGCAAGGACCC
GGCCTCCGGGATCGTGCCCACCGCCGCGGAGGCCGCCGCCGTGGACATTC
TAAAGCGGGCGGCGACGGCCAAGCCAAGCGGCTTGCCCGCCTCGAAGAGT
CACGACCCGCGAGCGATGTTCGACTCCGCTCTGTCTCAGCAAGCCGAGGA
CGGCAAGGCATCCGGCGGCATTAAGCGCGACGTCGCGACGGACACGCCCG
ACGCCACGCGGGTAGCCTTCCGGGCGACGGCCTACGGGAAGGACGGGCAG
GCAGCCGCTGAGCTCTCGGCGGAGGAGGCCGCGGAGGTGGGGGCGTTGCG
GTCGAGGGCGCCGGGGTCCGCCGCGGGCTACGCCGCGGCCGCCGCGGCGC
CGGTTCACGACGGCCGGAACATGTTCGACTCCGACCTTACGCACAGCGCC
GGCGACACGCCGGCTTCCCACACCATCAAGCGCGACGTCGCGGCGGATAC
GCCCGATGCCACGCGGGTGGCGTTCCGAGCGTCGGCGTACGGGAAGGACC
CTCAGGCGGCCGCGGCGCTCTCCGCGCAGGAGGCGGCGGACGTGGACAGC
TTGCGAAAGAGTGCGGTGGCACGCGGCAGTGGCTACGCTGCAGACGCCGC
GCCCATCCACGACAGCCGGAACATGTTCGACTCGGACCTCTCGCACGGCG
CCGGCACCGCAGCGGCGTCCGATACCATCAAGCGCGACGTTACCGCGGAC
ACGCCGGATGCCACGCGAGTTGCGTTCCGCGCGTCAGACTACGGGAAGGA
TCCTCAGGCGGCCGCTGCGCTTTCGGCGCAAGAGGCGGCGGAAGTGGACG
TGTTGCTGCAGAACGCCCAGCGCGGCGGCGGCGACGCCGCGGCCGGCGCG
GCCCCCATCCACGACAGCCGGAACATGTTCGACTCGGACTTTGTGCACGG
CGCGGGTGACTCCGAGGCGTCAGACGCCATCAAGCGCGAGGTGGTGGCCG
ACACGCCGGAAGTTACTCGGCTCGTGTTCGGGGGCTCAGACTACGGCAAG
GATCCGCATATGAAGGCCCACACGGCGGAAAAGCAGGCGGAGTTGGACGC
CCTCGCCGCTCAGACGATGCGCCAGACCGCGGAGATGGCGAGATCCAGGC
GCTCGCAGGCCCCCGTGCACCACGACAGGTCGATGTTCGACTCGGATTTG
ACGCAGGGGGCCGGGGCCGTGAGGGAATCCGGGGCCATCAAGCGGAACGT
CGAGGCAGACACCCCGGCATTGACCCGGCTCAGTTTTTTCGGGAGCACCT
ATGATGCGAAAAGGGGCCCATTGGGCCATCGCCTACGCCAAGGCGCAGCA
CGGGTGCGCCAATGGAGGGTGCCGCGTCGCCACTTCCGGGGCGAGGGCGT
GGCTCTCCGGCGTGCCGGGAGGAGAGAACGACAGCAACGAGGACGCGACC
CCGGCCGAGACGAAGCTCGCGTTCGCATCCACCGTGTACGGCAAGGACCC
GGCCTCCGGGATCGTGCCCACCGCCGCGGAGGCCGCCGCCGTGGACATTC
TAAAGCGGGCGGCGACGGCCAAGCCAAGCGGCTTGCCCGCCTCGAAGAGT
CACGACCCGCGAGCGATGTTCGACTCCGCTCTGTCTCAGCAAGCCGAGGA
CGGCAAGGCATCCGGCGGCATTAAGCGCGACGTCGCGACGGACACGCCCG
ACGCCACGCGGGTAGCCTTCCGGGCGACGGCCTACGGGAAGGACGGGCAG
GCAGCCGCTGAGCTCTCGGCGGAGGAGGCCGCGGAGGTGGGGGCGTTGCG
GTCGAGGGCGCCGGGGTCCGCCGCGGGCTACGCCGCGGCCGCCGCGGCGC
CGGTTCACGACGGCCGGAACATGTTCGACTCCGACCTTACGCACAGCGCC
GGCGACACGCCGGCTTCCCACACCATCAAGCGCGACGTCGCGGCGGATAC
GCCCGATGCCACGCGGGTGGCGTTCCGAGCGTCGGCGTACGGGAAGGACC
CTCAGGCGGCCGCGGCGCTCTCCGCGCAGGAGGCGGCGGACGTGGACAGC
TTGCGAAAGAGTGCGGTGGCACGCGGCAGTGGCTACGCTGCAGACGCCGC
GCCCATCCACGACAGCCGGAACATGTTCGACTCGGACCTCTCGCACGGCG
CCGGCACCGCAGCGGCGTCCGATACCATCAAGCGCGACGTTACCGCGGAC
ACGCCGGATGCCACGCGAGTTGCGTTCCGCGCGTCAGACTACGGGAAGGA
TCCTCAGGCGGCCGCTGCGCTTTCGGCGCAAGAGGCGGCGGAAGTGGACG
TGTTGCTGCAGAACGCCCAGCGCGGCGGCGGCGACGCCGCGGCCGGCGCG
GCCCCCATCCACGACAGCCGGAACATGTTCGACTCGGACTTTGTGCACGG
CGCGGGTGACTCCGAGGCGTCAGACGCCATCAAGCGCGAGGTGGTGGCCG
ACACGCCGGAAGTTACTCGGCTCGTGTTCGGGGGCTCAGACTACGGCAAG
GATCCGCATATGAAGGCCCACACGGCGGAAAAGCAGGCGGAGTTGGACGC
CCTCGCCGCTCAGACGATGCGCCAGACCGCGGAGATGGCGAGATCCAGGC
GCTCGCAGGCCCCCGTGCACCACGACAGGTCGATGTTCGACTCGGATTTG
ACGCAGGGGGCCGGGGCCGTGAGGGAATCCGGGGCCATCAAGCGGAACGT
CGAGGCAGACACCCCGGCATTGACCCGGCTCAGTTTTTTCGGGAGCACCT
ACGGGGACGGGGACGGGGTCGCCGAGGAACAAATGGGCGCCGATGCCGAA
GCGTTGGCGGCGAAGCAGACGAAAGGCGCCAAGCTTGCCACGGTCGGGCG
CGGGGCGCGCAAGTCCAAGGTTCACGACACGAAGAAAGCAATGGCGGATG
ACGAGTACTCGGCGGCGGGATCGGAGTGAACGGGGACGGGGACGGGGTCG
CCGAGGAACAAATGGGCGCCGATGCCGAAGCGTTGGCGGCGAAGCAGACG
AAAGGCGCCAAGCTTGCCACGGTCGGGCGCGGGGCGCGCAAGTCCAAGGT
TCACGACACGAAGAAAGCAATGGCGGATGACGAGTACTCGGCGGCGGGAT
CGGAGTGA back to top
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