mRNA_S-dermatodea_contig1217.1351.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1217.1351.1
Unique NamemRNA_S-dermatodea_contig1217.1351.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Match: D8LBI4_ECTSI (Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI4_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 4.440e-106
Identity = 160/230 (69.57%), Postives = 183/230 (79.57%), Query Frame = 1 
Query:   58 DPAAAAPEQVHIALGVSGSKGEYAMTVSWATWPETRSQVLWGEAQDQLGNLAEGSSTTYSTHHPGRTDYTSGFLHSATLQGLQPSTAYYYSCGDEASALSSTRSFVTPPRVGGDQAVTFGVFGDLGQTDDSAATLAAVDEDASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMVVAGNHEIEAGST--GGKPFVAYENRFRMPAIQEPVQ-SYTCAKGGGLDG 738
            D + AAPEQVHIAL  S S  EYA+TV+W TWP T+S+V WG + D LGN+A+G+STTYS  HPGR DYTSGFLHSATLQGL+PS+ Y+YSCGD+   +SS RSF TPP+VG +Q +T GV GDLGQTDDSAA+LAA+D D S+DLVLHAGDLSYADCDQPRWDSFMRMLDPVAS LPWMV AGNHEIE      G KPF+AYE+RFRMPA+  P      C  GGGLDG
Sbjct:   63 DQSFAAPEQVHIALARSDSPEEYAVTVAWVTWPNTQSRVAWGSSVDNLGNIADGTSTTYSARHPGRADYTSGFLHSATLQGLEPSSTYFYSCGDDTLEMSSVRSFDTPPKVGPEQPITLGVLGDLGQTDDSAASLAAIDGDNSIDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIETNGAYPGAKPFLAYESRFRMPAVGAPTDLGRGCGAGGGLDG 292
[Close]
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Match: D7FWJ2_ECTSI (Purple acid phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ2_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 1.320e-75
Identity = 125/228 (54.82%), Postives = 157/228 (68.86%), Query Frame = 1 
Query:   76 PEQVHIALGVSGSKGEYAMTVSWATWPETRSQVLWGEAQDQ----LGNLAEGSSTTYSTHHPGRT--DYTSGFLHSATLQGLQPSTAYYYSCGDEASALSSTRSFVTPPRVGGDQAVTFGVFGDLGQTDDSAATLAAVDE-DASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMVVAGNHEIEAGSTGGKPFVAYENRFRMPAIQEPVQSYTCAKGGGLDG 738
            PEQ+H+AL   G +  YAM+VSW TW ET+SQV W    D     +G +  G++T YSTHH      +YTSG+LHSA +QGL+PST  +Y  GDE  ALS+ R F TP     +Q +  G+ GDLGQT+DS  TL A+     ++D+VLHAGDL+YA+C Q RWDSFMRMLDPVASH+PWMV AGNHEIEAGST   PF A+++RFRMP+    V+ + C   GGLDG
Sbjct:   62 PEQIHLAL-AGGDRDMYAMSVSWLTWEETKSQVFWSRDMDMDVHAVGEVVVGNATRYSTHHTNLDLEEYTSGWLHSAVIQGLEPSTTIFYCVGDEDLALSTVRDFTTPGVFAPEQPLVLGILGDLGQTNDSRNTLDALGRHQPAIDVVLHAGDLAYAECIQERWDSFMRMLDPVASHVPWMVAAGNHEIEAGSTSSGPFAAFQHRFRMPSEAPAVRGFECGVAGGLDG 288
[Close]
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Match: A0A835YVM8_9STRA (Purple acid phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM8_9STRA)

HSP 1 Score: 176 bits (447), Expect = 4.040e-49
Identity = 102/212 (48.11%), Postives = 127/212 (59.91%), Query Frame = 1 
Query:   73 APEQVHIALGVSG--SKGEYAMTVSWATWPETRSQVLWGEAQDQLGNLAEGSSTTYSTHHPGRTDYTSGFLHSATLQGLQPSTAYYYSCGDEASALSSTRSFVTPPRVG-GDQAVTFGVFGDLGQTDDSAATLAAVDEDASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMVVAGNHEIEAGSTGGKPFVAYENRFRMPAIQEPV 699
            APEQ+HI+L      + G +A+TVSW T  +  S V +G   D    + EG+S+ Y+        YTS  LH ATL GL P   Y YSCGD A   S+ RSF  PP  G G      GV GDLGQT DSAATL  + E+    +VLHAGDL+YADC+Q RWDS+ R+ +  A+ +PWM  AGNHEIE   + G  F AYE R+ MPA + PV
Sbjct:    6 APEQLHISLASPSLTAPGTHAITVSWVTHEDADSFVWYGREGDDATRV-EGTSSRYTFDDA----YTSPLLHRATLTGLAPGETYAYSCGDSARDRSAQRSFRVPPARGDGSAPFVLGVVGDLGQTADSAATLMHIQEEPLPLVVLHAGDLAYADCEQDRWDSYGRLAEAAAARVPWMTAAGNHEIELEPSTGLAFTAYEARYAMPAARPPV 212
[Close]
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Match: A0A7S1C8N0_9STRA (Purple acid phosphatase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8N0_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.660e-44
Identity = 98/234 (41.88%), Postives = 132/234 (56.41%), Query Frame = 1 
Query:   58 DPAAAAPEQVHIALGVSGSKGEYAMTVSWATWPETRSQVLWGEAQDQLGNLAEGSSTTYSTHHPGR-----TDYTSGFLHSATLQGLQPSTAYYYSCGDEASALSSTRSFVTPPRVGGDQAVTFGVFGDLGQTDDSAATLAAVDEDASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMVVAGNHEIEAGSTGGKPFVAYENRFRMPAIQEPVQSYTCAKGGGLDGLD 744
            DP    PEQVH+ALG S S+     TVSW T     S V +G +   L   A G+ST+Y T+   R      +YTSG LH  TL GL+PST YYY+       +  + SF T P  G   A++F + GDLGQT  S  TL  + ++    +++HAGD+SYADC   RWDS+ RM + +A   PWMVVAGNHE+E   TG K   A ++R++MP ++  V +    +  G  G D
Sbjct:   26 DPVPNTPEQVHLALGHSPSE----FTVSWLTPRAADSTVSYGTSPGALSATATGNSTSYHTYSVPRDTHYFVNYTSGVLHHVTLTGLKPSTTYYYALPGRP--VDPSMSFTTMPADGDTAAISFSIVGDLGQTSFSQETLDHMMQETDSSVIIHAGDMSYADCLGERWDSWFRMTEVLAKRKPWMVVAGNHELEPDGTG-KVSSALKHRYKMPEVKPGVDTSAIFQHAGAAGHD 252
[Close]
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Match: A0A7S3UT50_HETAK (Purple acid phosphatase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT50_HETAK)

HSP 1 Score: 162 bits (411), Expect = 1.170e-43
Identity = 95/220 (43.18%), Postives = 122/220 (55.45%), Query Frame = 1 
Query:   73 APEQVHIALGVSGSKGEYAMTVSWATWPETRSQVLWGEAQDQLGNLAEGSSTTYSTHHPGRTDYTSGFLHSATLQGLQPSTAYYYSCGDEASALSSTR------------SFVTPPRVGGDQAV---TFGVFGDLGQTDDSAATLAAVDEDASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMVVAGNHEIEAGSTGGKPFVAYENRFRMPAI 687
            AP QVH+A G   S+    +TVSW T  +T S V +G     L ++A GSS+ Y+        YTSG +H  T+ GL P T YYY    + +  S+ +            +F T P  G   A    +F V GDLGQT DS  T+  V  D +   V+HAGDL+YADC QPRWD+F  ++ PVA  LPWMVV GNHEIE  +     F+AYE RFRMP +
Sbjct:   45 APSQVHLAFGHDSSQE---ITVSWVTSDKTESTVSYGPNPWNLDHVATGSSSQYNFRSFYYGSYTSGHIHHVTITGLTPDTKYYYRISAQGAGASAFQPPILGGPIGVADTFTTEPPPGPGAAFEPFSFAVIGDLGQTADSECTVTQVGRDPAFRFVVHAGDLAYADCFQPRWDTFGELVAPVARRLPWMVVPGNHEIEYDAISNTTFLAYEARFRMPQV 261
[Close]
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Match: A0A024GJF9_9STRA (Purple acid phosphatase n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GJF9_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.190e-39
Identity = 89/217 (41.01%), Postives = 120/217 (55.30%), Query Frame = 1 
Query:   76 PEQVHIAL----GVSGSKGEYAMTVSWATWPETRSQ--VLWGEAQDQLGNLAEGSSTTYSTHHPGRTDYTSGFLHSATL--QGLQPSTAYYYSCGDEASALSSTRSFVTPPRVGGDQAVTFGVFGDLGQTDDSAATLAAV-DEDASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMVVAGNHEIEAG-STGGKPFVAYENRFRMPAIQEP 696
            P  +H+AL     +S       MTVSW T     S   V +G    +L  L+E   ++         DY S   H  T+  + L P T YYY CG+EAS  S  R+F  P  +G  ++  F + GDLGQT+ S  TL  +      L  + HAGDLSYAD DQPRWDS+ ++++P+AS +PWMV +GNHE E    +   PF++Y+NRFRMP I EP
Sbjct:   39 PLLIHLALYDDTRISSDLTGNGMTVSWVTKQSLMSPSVVQFGL---ELSRLSEKIVSSQKCERYSFCDYRSPCFHHVTIPARSLSPGTMYYYRCGNEASGWSEVRTFTIPMAIGNTKSAVFALIGDLGQTEFSQRTLQYIASRKKELTAIFHAGDLSYADSDQPRWDSWAKLIEPIASEIPWMVASGNHEKETPCKSKTDPFISYQNRFRMPYINEP 252
[Close]
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Match: A0A8K1FD08_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD08_PYTOL)

HSP 1 Score: 148 bits (373), Expect = 2.750e-38
Identity = 91/211 (43.13%), Postives = 116/211 (54.98%), Query Frame = 1 
Query:   70 AAPEQVHIAL---GVSGSKGEYAMTVSWATW-PETRSQVLWGEAQDQLGNLAEGSSTTYSTHHPGRTDYTSGFLHSATLQG--LQPSTAYYYSCGDEASALSSTRSFVTPPRVGGDQAVTFGVFGDLGQTDDSAATLAAVDEDASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMVVAGNHEIEAG-STGGKPFVAYENRFRMP 681
            A P QVH++L     S ++    + VSWAT  P  RS V +G +  +L  + E +S           DYTS + H   + G  L+P+T YYY CGD     S   +F T   VG    VTF V GDLGQT+ S  TL  +     L  +LHAGDLSYAD  QPRWD + ++++P+AS  PWMV  GNHE E     G   FVAY+ RFRMP
Sbjct:   44 ALPTQVHVSLYDKTWSPAEKNVGIAVSWATGTPTQRSMVRFGRSATELPKMVEATSPCEQYEF---CDYTSPWFHHVVIPGDLLEPNTTYYYRCGDPTGGWSELLTFTTSVAVGSQAPVTFAVIGDLGQTEYSEQTLRHLINQDGLTAILHAGDLSYADNYQPRWDRWGKLVEPLASTCPWMVSVGNHEEERPCQDGADRFVAYQKRFRMP 251
[Close]
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Match: K3WGB9_GLOUD (Purple acid phosphatase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGB9_GLOUD)

HSP 1 Score: 146 bits (369), Expect = 1.030e-37
Identity = 88/216 (40.74%), Postives = 116/216 (53.70%), Query Frame = 1 
Query:   70 AAPEQVHIALGVSGSKG---------EYAMTVSWATWPETRSQVLWGEAQDQLGNLAEGSSTTYSTHHPGRTDYTSGFLHSATLQG--LQPSTAYYYSCGDEASALSSTRSFVTPPRVGGDQAVTFGVFGDLGQTDDSAATLAAVDEDASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMVVAGNHEIEAGSTGGKP-FVAYENRFRMP 681
            A P Q+HIAL  +   G            MT+SWAT  +T++ V+  +      NL                +YTS + H  T+ G  L   T +YY CGDE +  S   SF T   +G    +TFGV GDLGQT  S  TL  + + + L  +LHAGDLSYAD +QPRWD + R+++P++S +PWMV AGNHE E         FVAY+ RFRMP
Sbjct:   41 ALPSQIHIALADAHRNGGLNPTNEMQRVGMTISWATAMKTKTSVV--KFGQNPANLTREVRAEIPCEQYEFCEYTSPWFHHVTIDGDLLVSGTTFYYQCGDEDAGWSDVHSFTTALPIGSQAPMTFGVIGDLGQTKFSEQTLRHLSDRSGLTAILHAGDLSYADSEQPRWDRWGRLVEPLSSRMPWMVAAGNHEEEHPCQADVDRFVAYQVRFRMP 254
[Close]
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Match: A0A5D6YDX0_9STRA (Purple acid phosphatase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDX0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.260e-37
Identity = 87/207 (42.03%), Postives = 114/207 (55.07%), Query Frame = 1 
Query:   70 AAPEQVHIALGVSGSKGEYAMTVSWATWPETRSQVLWGEAQDQLGNLAEGSSTTYSTHHPGRTDYTSGFLHSATLQG--LQPSTAYYYSCGDEASALSSTRSFVTPPRVGGDQAVTFGVFGDLGQTDDSAATLAAVDEDASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMVVAGNHEIEAGSTGG-KPFVAYENRFRMP 681
            AAPEQ+H+AL  +G      + VSWAT   TR+ ++         N +  +             YTS + H   + G  L PST Y+Y CGD  +  S   SF T    G  + ++F V GDLGQT  S  TL  +  +  L  +LHAGDLSYAD +QPRWD + R+++P+AS +PWMV AGNHE E        PFVAY+ RFRMP
Sbjct:  534 AAPEQIHLALAAAGG-----VRVSWATKTRTRNSIV--RFSLNAHNFSNEARADAPCEQYDFCAYTSPWFHHVLIDGERLLPSTTYFYQCGDPDAGWSKVLSFTTALAAGSHEPISFAVIGDLGQTKFSEQTLRHLSSERHLAAILHAGDLSYADSEQPRWDRWGRLIEPLASRMPWMVAAGNHEQERPCQAHIDPFVAYQVRFRMP 733
[Close]
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Match: F0WT66_9STRA (Purple acid phosphatase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WT66_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.490e-37
Identity = 88/217 (40.55%), Postives = 117/217 (53.92%), Query Frame = 1 
Query:   76 PEQVHIAL----GVSGSKGEYAMTVSWATWPETRSQVLWGEAQDQL--GNLAEGSSTTYSTHHPGRTDYTSGFLHSATLQG--LQPSTAYYYSCGDEASALSSTRSFVTPPRVGGDQAVTFGVFGDLGQTDDSAATLAAVDE-DASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMVVAGNHEIEAGSTGGK-PFVAYENRFRMPAIQEP 696
            P Q+H+AL      S S     MTVSWAT    R  ++    Q  L    L+E   ++         DY S   H   +    L P T YYY CG+EAS  S  ++F TP  +G  ++  F + GDLGQT+ S  TL  +      L  + HAGDLSYAD DQPRWDS+ +M++P+AS +PWMV +GNHE E        PF++Y+ RF MP + EP
Sbjct:   59 PAQIHLALYDDTQTSSSLAGNGMTVSWAT---KRRNLIPSVVQFGLKPSQLSEKVVSSQQCEQYSFCDYHSACFHHVNIPAKRLLPETLYYYRCGNEASGWSEIKNFTTPMAIGNTKSALFALIGDLGQTEFSKRTLEYISSRKKDLRAIFHAGDLSYADSDQPRWDSWAKMVEPIASQIPWMVASGNHEEEEPCKAKTDPFISYQKRFCMPYVSEP 272
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1217.1351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI4_ECTSI4.440e-10669.57Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWJ2_ECTSI1.320e-7554.82Purple acid phosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A835YVM8_9STRA4.040e-4948.11Purple acid phosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A7S1C8N0_9STRA2.660e-4441.88Purple acid phosphatase n=1 Tax=Bicosoecida sp. CB... [more]
A0A7S3UT50_HETAK1.170e-4343.18Purple acid phosphatase (Fragment) n=1 Tax=Heteros... [more]
A0A024GJF9_9STRA3.190e-3941.01Purple acid phosphatase n=2 Tax=Albugo candida Tax... [more]
A0A8K1FD08_PYTOL2.750e-3843.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WGB9_GLOUD1.030e-3740.74Purple acid phosphatase n=1 Tax=Globisporangium ul... [more]
A0A5D6YDX0_9STRA2.260e-3742.03Purple acid phosphatase n=1 Tax=Pythium brassicum ... [more]
F0WT66_9STRA2.490e-3740.55Purple acid phosphatase n=1 Tax=Albugo laibachii N... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1217contigS-dermatodea_contig1217:2531..6821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.0
Seed ortholog evalue6.2e-89
Seed eggNOG ortholog2880.D8LBI4
KEGG koko:K22390
EggNOG free text desc.acid phosphatase activity
EggNOG OGsCOG1409@1,KOG1378@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIron/zinc purple acid phosphatase-like C-terminal domain
Ec32 orthologEc-27_003870.1
Exons4
Model size746
Cds size744
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1217.1351.1prot_S-dermatodea_contig1217.1351.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1217 2531..6821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924234.3649566-CDS-S-dermatodea_contig1217:2530..27371622924234.3649566-CDS-S-dermatodea_contig1217:2530..2737Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1217 2531..2737 -
1694079113.27016-CDS-S-dermatodea_contig1217:2530..27371694079113.27016-CDS-S-dermatodea_contig1217:2530..2737Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1217 2531..2737 -
1622924234.374997-CDS-S-dermatodea_contig1217:3420..35051622924234.374997-CDS-S-dermatodea_contig1217:3420..3505Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1217 3421..3505 -
1694079113.2797716-CDS-S-dermatodea_contig1217:3420..35051694079113.2797716-CDS-S-dermatodea_contig1217:3420..3505Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1217 3421..3505 -
1622924234.3822827-CDS-S-dermatodea_contig1217:4391..46141622924234.3822827-CDS-S-dermatodea_contig1217:4391..4614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1217 4392..4614 -
1694079113.2875834-CDS-S-dermatodea_contig1217:4391..46141694079113.2875834-CDS-S-dermatodea_contig1217:4391..4614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1217 4392..4614 -
1622924234.3894737-CDS-S-dermatodea_contig1217:6592..68211622924234.3894737-CDS-S-dermatodea_contig1217:6592..6821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1217 6593..6821 -
1694079113.2958581-CDS-S-dermatodea_contig1217:6592..68211694079113.2958581-CDS-S-dermatodea_contig1217:6592..6821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1217 6593..6821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1217.1351.1

>prot_S-dermatodea_contig1217.1351.1 ID=prot_S-dermatodea_contig1217.1351.1|Name=mRNA_S-dermatodea_contig1217.1351.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=248bp
TSLRAAERRQAEIVSGEIGDPAAAAPEQVHIALGVSGSKGEYAMTVSWAT
WPETRSQVLWGEAQDQLGNLAEGSSTTYSTHHPGRTDYTSGFLHSATLQG
LQPSTAYYYSCGDEASALSSTRSFVTPPRVGGDQAVTFGVFGDLGQTDDS
AATLAAVDEDASLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASHLPWMV
VAGNHEIEAGSTGGKPFVAYENRFRMPAIQEPVQSYTCAKGGGLDGLD
back to top

mRNA from alignment at S-dermatodea_contig1217:2531..6821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1217.1351.1 ID=mRNA_S-dermatodea_contig1217.1351.1|Name=mRNA_S-dermatodea_contig1217.1351.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4291bp|location=Sequence derived from alignment at S-dermatodea_contig1217:2531..6821- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAAGCTTGCGCGCGGCGGAGCGCCGCCAAGCGGAAATCGTGTCAGGGGA
AATCGGCGACCCAGCGGCCGCCGCGCCGGAGCAGGTTCACATCGCTCTCG
GGGTTTCGGGGTCGAAGGGGGAGTACGCGATGACGGTGTCATGGGCCACT
TGGCCCGAGACGAGGTCACAGGTGCTGTGGGGCGAGGCGCAGGATCAGCT
GGGCAACTTGGCCGAGGGCAGCTCGACGAGTGAGTTCCGTGTGTCGGTTT
TGGTGTGTGTGTTTTGTGTGTGTTGTGCATGTGTGTCATGGTCTGGTCAT
GGTGTGGTGTCCAAAGCGCTTGTTTCACACTATAACAATCGGGGTGTGTT
GGTTTTGAGTTTCTCAAGTACTTATGTCACGGACGGTTGTTTTCTGTTCC
ACGTTGGAGATCTCATCTTGTGTCTTTCACAACACAACGACTGACGAGGC
ACAACAACACAGTATTAATATTAATAGTGTAGTTCTGTACTCTGCACAGC
AGCAGGTATTACTTGTACAAAGCATAGAGCTCTACTGCTGTATATATGAG
TACTGCTCTACTCGTAATATACGATACCTGGTACAAAATACTTGTACTTG
TACAGAGTAAATGATACCAGGTAGAGTTTACTTTTATAGTCTACAGCAGT
AGTATCGTACTCGATCTGCGCTGTGTACAGCAGGTCTTGTCATACTGGAA
ACTCTGTACCTGGGTATCCTACAACACACAAGTTTGTATTCAACATAGAT
GATACTTGTATGCATCCAGCTGTTGTCCTGATGTATAAGAGATACAAGCA
TACCTGTTTGTGCACAGAATCGTACTGATGTACTGTATGCCTTGTTCATG
CCGGTCACCGTCCGTGTCGTATGTACAATGTTCACGTATCATACGATATG
AAAAACACATTACAGTACAGAACAGCTCATCATGTCCTATCCATGATAGT
CCCCATGAGTTACTTGTATGGGTTGTACACTTTCTGAATACAACAGTCTG
TTGAATTGTACACACGTACATCAGTGTTTCGTATTTTGGTGTGCCGAAGG
TGTGTCGCTCCACCTTCGAGACACGTGGCGCACTTGTGTTTGCGTCTCGC
GCTTCATACACGGCAGGATCGACCGCTTGATATTTTATACTTTTGGGCGG
CAGTTATTTTTTTCCGTAAATGTGGGCATCATATCATAGCAATTGCGCAC
CAATGATGAGCCTCCAGCGAGGGCCCATTCGAACAGGAACAAATTAGCGG
ACACCTGATTTGTTGCCACCCTAAACCCGGCCTTCTGTTGTATTCAGGCG
GGGGGGGGGAGGGGCAACGCTCGCTCTATGTTTCTGTTTTTTTTTTTTTT
AGGGGGGGGATGGGCTTGAAACAGGGGTACCGTATGCGGTCTGATTGGGA
TACTGCTTTCTGAGTCTCCTTGAAATTGGCCGACGTTTGAGATAAGAAGC
TCGCTTCGCTCGCAACAATAGATGTCTGCACCCACTAGTAGTGAGGGTGC
TCTCTCCTACCTGTCGAGCCCTTCGCATGCGGCGACTGAAATTATACAAG
TAATCAGGGGAACATCCCGACTGAAAGGTCCGACCGAGCTTCACAAAAAA
AACGCAAAATAGATGGAAACCCCTGGTAATTTAACATGCGGGGTCTCGGT
CTCCCGTAATGTAGTTGGAGCTGGAATGAACCTCGATAAACGAGATGCCG
GACCTTCGCGCCACTCCGACCGCTATGGCACAAGTAGTGATATTATGTTT
TTTTATAAAATGTATAATCCGTACTCATGAAGCAACAGCCATGAGACCAA
TCACCAGGTCACGCTTTAAATACGCTTGGACAAAGCTTACGTACTATTAA
TACCCTGTATACGTGCGGTAATTTTTCATTTCGCCCATCTTTTTCAGAAA
GGGTCTGTGTGGACAACGTAAAAAACACTTCGCTGCTGTACCAGGATTGT
GATCAATTTCCATTCCGCGGCCGGTAATGCTTCACCCTCAAAACAATACC
CCCCTCCCCTCCACCCGGCCCGGAGACAGACGAAGGAGCGCACTGATCCC
CCTTGCATGTATTTCTTGCATAATTCTGCCACCAACAGCGGTTGGCTATA
GATGACACCAACAGCGTCTGCCCACGCCAACAACACGGTGGTTTGGCTTG
CGCTTAACTCAACTCCAATCTTCCGCCCCCTGTCGCCCCCTCGCCCTCAA
ACACCAGCCTACTCGACCCACCACCCCGGGCGGACGGACTACACGAGCGG
CTTCCTTCACTCGGCGACCCTGCAAGGCCTGCAGCCGTCCACGGCGTACT
ACTACTCATGCGGAGACGAGGCCTCGGCATTGAGCTCGACGCGCTCGTTC
GTGACGCCACCCAGGGTCGGGGGGGATCAGGCGGTTACCTTCGGCGTCTT
TGGAGACCTGGGGCAGACCGACGACTCGGCGTAAGTGCCCACGGTACATG
TTCGCAGGCGGCAGTGTAGTGTATGATGTACTATGCTGTGCTGTACATGA
TGTACTGTGTGCTGTGCTGTACGTGCTACGCCGCCGCCGTAGCAGCAGCA
GTAGTAGCAGGAGGGAAAAGCGGTGTGTGTGTGTGCTGTGTGCGGGTGGT
GGTGGTGGTGGTGGTGGTGGTAGTGGTGCAGCCACACCACGGTTTTGGGA
GTAGTGGTGTCACCGCTTGTTTTTGCATTCTGCCCAAGCGTCGGCGACAG
GTACGTGTGCATTTATGTCAGCTTAAGAGGTGCTCGTGCTGCTTTTTACG
CGGAACGCAGACACGCAGACGCAGCAGCAGCAGCTTTTCCACTTTTTCAT
TTTTACTTCCACACCTTTTCAGTTCGGCGACGATCGTTTACCACGCGCTA
TCGTGGTGTCAAATCAAGCACGCGTTCCTTTTCCCGTACATACGTACCAG
CAGAGGACCGACACACCTCGACATGTATTGGTCCCCCTGTCGGGCATGAC
CAAGCGTTCGTCAGCACAGAGCGTCACCTGCTAACCACTGGTCCATATGT
GCGTTTGTTCTGTCATGTAGTTGCTCACATTGTTTGCCTCTCGCTTTTTG
TACAACTGATCGGTCTATTGTCTGTACGGCCAACCCCGTTCGGCCTAAAC
ACAGCTTTTCCTCTCCTCTTCAGATTCGAACAAAGTCGATCAGGAACCAA
ACAAAAAAATCGCGACACATGAAAAGTAATCACACAATGCATGCATACAG
CTTGACCCTGCTTGGTCCTCCCGATTCGACCTTTCCTCGTCCTCCGCTGC
CTCTCTGCGAACACGGACGCTCACGCTCACACCCGCACCCTACACTCTTC
CTGAAACCTCGCGCAGCGCAACGCTGGCTGCCGTTGACGAGGACGCGTCG
CTGGACCTCGTCCTACACGCGGGCGACCTGTCCTACGCTGACTGTGATCA
GGTGAGGCCCGTCCCCGTCCCACCGCTGACGCTGCGCTGTGGTCATGCTG
CCGCGATTTGGATGGCGCAACTAACTCTGTTGGACTCGCCACTGCGCACA
CCACACGTGGATTGACGTTGAACGTTTTGCGTTTGTCCGACTTGGGAGGT
TATTTTGTCTGGAGTTGCTTCATGGGCATCGAATCTAAAACGTGTCTTCC
TCCGTGTGCGTGCGAAGGGGTGAATCAGTCCCTAGACCGTCAGCGCGCTT
GACCCGCTTGCGACACCAAAAGTCTGGAACAACCTACAATGTAGCTGGCG
TTGTCTCTCTCTCTCGCCTCCACTGCCGCGCGACGAATTCGAGGGGTGCA
AGAAAACACTGCCATGAACAGAATTCCCCTCCTCGTCGTGACCGCTCTTG
GTGGAGACCTGCCTCAAAATTGTGGCCTAGGATACCAGACGGAAACGCCC
AGGGGTTCTACACAACTTGATTCGACGGCGATTTTTTGTGCAATGGGAAG
CCACGCACCGTGCTTGCTGTGACTCGAGAAGCACCGAGAGTCGGAGTACG
AACACTACCACCAACCGAGGTCTTCTGGTGTCTCCGCCCATATCACCGCG
CCACCGCATGCTCTTCCGCAACACGTAACCTCCCCCCCCCTCCCTCCCCC
GCGCGCCCTCTATATCCCCAACCCAAACCAAAAGCCCCGGTGGGATTCGT
TTATGCGAATGCTTGACCCCGTCGCGAGCCACCTCCCGTGGATGGTGGTG
GCTGGCAACCACGAAATAGAGGCGGGCTCCACGGGTGGCAAGCCGTTCGT
GGCCTACGAGAACCGCTTCCGGATGCCCGCCATTCAGGAGCCCGTCCAGA
GCTATACCTGCGCCAAGGGCGGCGGCCTGGACGGCCTGGAT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1217:2531..6821-

>mRNA_S-dermatodea_contig1217.1351.1 ID=mRNA_S-dermatodea_contig1217.1351.1|Name=mRNA_S-dermatodea_contig1217.1351.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at S-dermatodea_contig1217:2531..6821- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAAGCTTGCGCGCGGCGGAGCGCCGCCAAGCGGAAATCGTGTCAGGGGA
AATCGGCGACCCAGCGGCCGCCGCGCCGGAGCAGGTTCACATCGCTCTCG
GGGTTTCGGGGTCGAAGGGGGAGTACGCGATGACGGTGTCATGGGCCACT
TGGCCCGAGACGAGGTCACAGGTGCTGTGGGGCGAGGCGCAGGATCAGCT
GGGCAACTTGGCCGAGGGCAGCTCGACGAACAAGCTTGCGCGCGGCGGAG
CGCCGCCAAGCGGAAATCGTGTCAGGGGAAATCGGCGACCCAGCGGCCGC
CGCGCCGGAGCAGGTTCACATCGCTCTCGGGGTTTCGGGGTCGAAGGGGG
AGTACGCGATGACGGTGTCATGGGCCACTTGGCCCGAGACGAGGTCACAG
GTGCTGTGGGGCGAGGCGCAGGATCAGCTGGGCAACTTGGCCGAGGGCAG
CTCGACGACCTACTCGACCCACCACCCCGGGCGGACGGACTACACGAGCG
GCTTCCTTCACTCGGCGACCCTGCAAGGCCTGCAGCCGTCCACGGCGTAC
TACTACTCATGCGGAGACGAGGCCTCGGCATTGAGCTCGACGCGCTCGTT
CGTGACGCCACCCAGGGTCGGGGGGGATCAGGCGGTTACCTTCGGCGTCT
TTGGAGACCTGGGGCAGACCGACGACTCGGCCCTACTCGACCCACCACCC
CGGGCGGACGGACTACACGAGCGGCTTCCTTCACTCGGCGACCCTGCAAG
GCCTGCAGCCGTCCACGGCGTACTACTACTCATGCGGAGACGAGGCCTCG
GCATTGAGCTCGACGCGCTCGTTCGTGACGCCACCCAGGGTCGGGGGGGA
TCAGGCGGTTACCTTCGGCGTCTTTGGAGACCTGGGGCAGACCGACGACT
CGGCCGCAACGCTGGCTGCCGTTGACGAGGACGCGTCGCTGGACCTCGTC
CTACACGCGGGCGACCTGTCCTACGCTGACTGTGATCAGCGCAACGCTGG
CTGCCGTTGACGAGGACGCGTCGCTGGACCTCGTCCTACACGCGGGCGAC
CTGTCCTACGCTGACTGTGATCAGCCCCGGTGGGATTCGTTTATGCGAAT
GCTTGACCCCGTCGCGAGCCACCTCCCGTGGATGGTGGTGGCTGGCAACC
ACGAAATAGAGGCGGGCTCCACGGGTGGCAAGCCGTTCGTGGCCTACGAG
AACCGCTTCCGGATGCCCGCCATTCAGGAGCCCGTCCAGAGCTATACCTG
CGCCAAGGGCGGCGGCCTGGACGGCCTGGATCCCCGGTGGGATTCGTTTA
TGCGAATGCTTGACCCCGTCGCGAGCCACCTCCCGTGGATGGTGGTGGCT
GGCAACCACGAAATAGAGGCGGGCTCCACGGGTGGCAAGCCGTTCGTGGC
CTACGAGAACCGCTTCCGGATGCCCGCCATTCAGGAGCCCGTCCAGAGCT
ATACCTGCGCCAAGGGCGGCGGCCTGGACGGCCTGGAT
back to top