mRNA_S-dermatodea_contig12163.1349.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12163.1349.1
Unique NamemRNA_S-dermatodea_contig12163.1349.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12163.1349.1 vs. uniprot
Match: D8LHK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK8_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 8.910e-25
Identity = 70/167 (41.92%), Postives = 78/167 (46.71%), Query Frame = 1
Query:    1 MAEAIELALKFLPLDAAPMALIVTDGVMDYCPPMTYDGLSMRLCRQDVT--------------------------------------------------------------RGGCETDRRGADDRPHSGGYAMARKFRVPDLNGLAHLVSVSGGCFFDLETLHGVVA 315
            MA+AI LALKFLPLDAAP+AL+VTDG++DY  P  YDGLSMRLCR DV                                                                G  ETDR      PH   YA ARK RVPDL+GLAHLV V+GG  FDLETL   +A
Sbjct:  490 MADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDVAVSCLLMDRMGERADVGVXXXXXXXXXATTASSVAVLPSGNRGATAVGRWLPAAAAAGGVGGAMGRYETDRVDISFAPHGEAYAAARKHRVPDLSGLAHLVGVTGGWLFDLETLEAELA 656          
BLAST of mRNA_S-dermatodea_contig12163.1349.1 vs. uniprot
Match: A0A6H5KTQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.300e-24
Identity = 71/168 (42.26%), Postives = 79/168 (47.02%), Query Frame = 1
Query:    1 MAEAIELALKFLPLDAAPMALIVTDGVMDYCPPMTYDGLSMRLCRQDVT--------------------------------------------------------RGGC-------ETDRRGADDRPHSGGYAMARKFRVPDLNGLAHLVSVSGGCFFDLETLHGVVA 315
            MA+AI LALKFLPLDAAP+AL+VTDG++DY  P  YDGLSMRLCR DV                                                          GG        ETDR      PH   YA ARK RVPDL+GLAHLV V+GG  FDLETL   +A
Sbjct:  482 MADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDVAVSCLLMDRMGERADVGVGGGVXXXXXXXXXXSSVAVLPSGNRGATAVGRWLPAAAAAGGVGGAIGRYETDRVDISFAPHGEAYAAARKHRVPDLSGLAHLVGVTGGWLFDLETLEAELA 649          
BLAST of mRNA_S-dermatodea_contig12163.1349.1 vs. uniprot
Match: A0A836C7M7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.420e-10
Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    7 EAIELALKFLPLDAAPMALIVTDGVMDYCPPMTYDGLSMRLCRQD-----VTRGGCETDRRGADDR-PHSGGYAMARKFRVPDLNGLAHLVSVSGGCFFDLETL 300
            +A   ALKFLP DAAP+A+++TDGV +      YD L M+LCR D     +  G C      A    P S    +   F VPD+ GLAH+   +GG + DLE L
Sbjct:  300 QAAAFALKFLPFDAAPLAVVLTDGVGERPSSCAYDSLLMQLCRHDTPVHCIQVGACFAATAPASPADPQSVMPCLPFGF-VPDVEGLAHMCFTTGGEYLDLEAL 402          
BLAST of mRNA_S-dermatodea_contig12163.1349.1 vs. uniprot
Match: T0QNR9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNR9_SAPDV)

HSP 1 Score: 63.2 bits (152), Expect = 2.330e-9
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   22 ALKFLPLDAAPMALIVTDGVMDYCPPMTYDGLSMRLCRQDVTRGGCETDRRGADDRPH-SGGYAMARKFRVPDLNGLAHLVSVSGGCFFDLETL 300
            AL  LP DAAP+ ++VTDGV+D      YD + M+L R  +T   C   + G    PH S GY       VPD + L ++ + +GG FFD+ETL
Sbjct:  241 ALNSLPHDAAPLLVLVTDGVVDLPHVYAYDHMMMQLARHHIT---CHAIQLGGGFVPHCSFGY-------VPDTDLLRYVTAATGGAFFDMETL 324          
BLAST of mRNA_S-dermatodea_contig12163.1349.1 vs. uniprot
Match: A0A067D4Z2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D4Z2_SAPPC)

HSP 1 Score: 62.8 bits (151), Expect = 3.180e-9
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   22 ALKFLPLDAAPMALIVTDGVMDYCPPMTYDGLSMRLCRQDVTRGGCETDRRGADDRPH-SGGYAMARKFRVPDLNGLAHLVSVSGGCFFDLETLHGVVA 315
            AL  LP DAAP+ ++VTDGV+D      YD + M+L R  +T   C   + G    PH S GY       VPD + L ++ + +GG FFD++TL  + A
Sbjct:  239 ALNSLPHDAAPLLVLVTDGVVDLPHVYAYDHMMMQLARHHIT---CHAIQLGGGFVPHCSFGY-------VPDTDLLRYVTAATGGAFFDMQTLSSLPA 327          
BLAST of mRNA_S-dermatodea_contig12163.1349.1 vs. uniprot
Match: A0A1V9YH17_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH17_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.080e-9
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   22 ALKFLPLDAAPMALIVTDGVMDYCPPMTYDGLSMRLCRQDVTRGGCETDRRGADDRPH-SGGYAMARKFRVPDLNGLAHLVSVSGGCFFDLETLHGVVA 315
            AL  LP DAAP+ ++VTDGV+D      YD + M+L R  +T   C   + G    PH S GY       VPD + L ++ + +GG FFD+ TL  + A
Sbjct:  242 ALNSLPHDAAPLLVLVTDGVVDLPHVYAYDHMMMQLARHHIT---CHAIQLGGGFVPHCSFGY-------VPDTDLLRYVTAATGGAFFDMHTLSALHA 330          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12163.1349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LHK8_ECTSI8.910e-2541.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ7_9PHAE2.300e-2442.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7M7_9STRA1.420e-1041.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
T0QNR9_SAPDV2.330e-941.49Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A067D4Z2_SAPPC3.180e-939.39Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9YH17_9STRA8.080e-939.39Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12163contigS-dermatodea_contig12163:4759..5145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue5e-08
Seed eggNOG ortholog112098.XP_008607036.1
EggNOG free text desc.regulation of superoxide dismutase activity
EggNOG OGs2BY2G@1,2QPW4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924234.2796073-CDS-S-dermatodea_contig12163:4758..49051622924234.2796073-CDS-S-dermatodea_contig12163:4758..4905Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12163 4759..4905 +
1694079113.2113628-CDS-S-dermatodea_contig12163:4758..49051694079113.2113628-CDS-S-dermatodea_contig12163:4758..4905Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12163 4759..4905 +
1622924234.2876823-CDS-S-dermatodea_contig12163:4977..51451622924234.2876823-CDS-S-dermatodea_contig12163:4977..5145Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12163 4978..5145 +
1694079113.2239347-CDS-S-dermatodea_contig12163:4977..51451694079113.2239347-CDS-S-dermatodea_contig12163:4977..5145Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12163 4978..5145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12163.1349.1prot_S-dermatodea_contig12163.1349.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12163 4759..5145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12163.1349.1

>prot_S-dermatodea_contig12163.1349.1 ID=prot_S-dermatodea_contig12163.1349.1|Name=mRNA_S-dermatodea_contig12163.1349.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MAEAIELALKFLPLDAAPMALIVTDGVMDYCPPMTYDGLSMRLCRQDVTR
GGCETDRRGADDRPHSGGYAMARKFRVPDLNGLAHLVSVSGGCFFDLETL
HGVVA
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mRNA from alignment at S-dermatodea_contig12163:4759..5145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12163.1349.1 ID=mRNA_S-dermatodea_contig12163.1349.1|Name=mRNA_S-dermatodea_contig12163.1349.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at S-dermatodea_contig12163:4759..5145+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGAGGCGATCGAGCTCGCGCTGAAGTTTCTCCCCCTAGACGCGGC CCCGATGGCGCTAATCGTGACGGACGGGGTGATGGACTACTGCCCCCCCA TGACGTACGATGGGCTGTCAATGCGGCTCTGCCGCCAGGACGTGACGGTG TCGTGCCTGCTGGTGGACCGGATAGGGGCGACGGCGATGGGGCAGATCGG GGCGTCGGCCTACGGGAAGCGGGGAGGCTGCGAGACGGACCGCCGAGGCG CCGACGACAGGCCGCATAGCGGCGGCTACGCCATGGCGAGGAAGTTCCGA GTCCCAGACCTGAACGGTCTCGCGCACCTGGTGAGCGTCAGCGGGGGCTG CTTCTTCGACCTCGAGACGCTTCACGGGGTTGTCGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12163:4759..5145+

>mRNA_S-dermatodea_contig12163.1349.1 ID=mRNA_S-dermatodea_contig12163.1349.1|Name=mRNA_S-dermatodea_contig12163.1349.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig12163:4759..5145+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGAGGCGATCGAGCTCGCGCTGAAGTTTCTCCCCCTAGACGCGGC
CCCGATGGCGCTAATCGTGACGGACGGGGTGATGGACTACTGCCCCCCCA
TGACGTACGATGGGCTGTCAATGCGGCTCTGCCGCCAGGACGTGACGATG
GCGGAGGCGATCGAGCTCGCGCTGAAGTTTCTCCCCCTAGACGCGGCCCC
GATGGCGCTAATCGTGACGGACGGGGTGATGGACTACTGCCCCCCCATGA
CGTACGATGGGCTGTCAATGCGGCTCTGCCGCCAGGACGTGACGCGGGGA
GGCTGCGAGACGGACCGCCGAGGCGCCGACGACAGGCCGCATAGCGGCGG
CTACGCCATGGCGAGGAAGTTCCGAGTCCCAGACCTGAACGGTCTCGCGC
ACCTGGTGAGCGTCAGCGGGGGCTGCTTCTTCGACCTCGAGACGCTTCAC
GGGGTTGTCGCGCGGGGAGGCTGCGAGACGGACCGCCGAGGCGCCGACGA
CAGGCCGCATAGCGGCGGCTACGCCATGGCGAGGAAGTTCCGAGTCCCAG
ACCTGAACGGTCTCGCGCACCTGGTGAGCGTCAGCGGGGGCTGCTTCTTC
GACCTCGAGACGCTTCACGGGGTTGTCGCG
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