mRNA_S-dermatodea_contig1216.1346.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1216.1346.1
Unique NamemRNA_S-dermatodea_contig1216.1346.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1216.1346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1216contigS-dermatodea_contig1216:4771..7053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size328
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1216.1346.1prot_S-dermatodea_contig1216.1346.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1216 4799..7053 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924233.9714813-UTR-S-dermatodea_contig1216:4770..47981622924233.9714813-UTR-S-dermatodea_contig1216:4770..4798Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1216 4771..4798 +
1694079112.9823103-UTR-S-dermatodea_contig1216:4770..47981694079112.9823103-UTR-S-dermatodea_contig1216:4770..4798Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1216 4771..4798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924233.9848304-CDS-S-dermatodea_contig1216:4798..48611622924233.9848304-CDS-S-dermatodea_contig1216:4798..4861Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1216 4799..4861 +
1694079112.9919467-CDS-S-dermatodea_contig1216:4798..48611694079112.9919467-CDS-S-dermatodea_contig1216:4798..4861Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1216 4799..4861 +
1622924234.0001929-CDS-S-dermatodea_contig1216:6816..70531622924234.0001929-CDS-S-dermatodea_contig1216:6816..7053Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1216 6817..7053 +
1694079113.0009868-CDS-S-dermatodea_contig1216:6816..70531694079113.0009868-CDS-S-dermatodea_contig1216:6816..7053Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1216 6817..7053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1216.1346.1

>prot_S-dermatodea_contig1216.1346.1 ID=prot_S-dermatodea_contig1216.1346.1|Name=mRNA_S-dermatodea_contig1216.1346.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
MAGDPWDVFGSDSDEDQAVAKPQLPLPQPTTLPASEKNRSRAEKRHLWRA
LLPNFTGAPPDTGGPEPTNSARKAVLVDSPGVGESLGLDAADVHAGRGAG
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mRNA from alignment at S-dermatodea_contig1216:4771..7053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1216.1346.1 ID=mRNA_S-dermatodea_contig1216.1346.1|Name=mRNA_S-dermatodea_contig1216.1346.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2283bp|location=Sequence derived from alignment at S-dermatodea_contig1216:4771..7053+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGAGTGCCTGATTAATAACGAGGAGCTATGGCGGGAGACCCTTGGGATG
TGTTCGGCTCGGACAGCGACGAGGACCAAGCGGTCGCAAAGGTTCGTGTC
CTGCTGTATGCTAGAGCTGCAACTAACTCCAGGCTGGGTGGGCTGAACAC
GCGAACAAAGCCATAAAAAAATCCCCAGCTGTGCTTGGCGTGACGGCGGT
GGGTGCCTAGCTCTACCGCCGATACGACTGTTGTTCTTGATCCTTGAGAG
TCTGCTGGCTAAGATTATATCACGCAATCCATGTTGCCCGGGTGCGGCTA
GTGGGTTTTTGTGCCCGCAGCAAAGCTAGCAGGTTATGCGGGGACCATAC
ATGAAGCACACTCACACACTCACAGGTTAAACAGAAGTGCAAACCTGACA
GTCCCGCCGAGAAGCACCAGCCTCGCATGCAGTACCGCTGTAAAAGTAGC
ATTGCATGGCGGCTGGGCGGTGGGGCGGATGCGTTGCGTATGTGCCAGTT
GGTTAGTTCTCTGTTGCGCCACGTAACCTGAAAGTATGACACAGCGACTT
GCGCGTGTCAAGTATAATAGTGCTTGTTTGTTTGCGCAGCTTTCAGAGCA
TCCCATACGCCATCGCGTGTGGACTGTGTGGACAGTGGACAGATACGTTT
TTGGCTTCGGACGACCCTGACAGAAAACGTATTCGCCCTGCGGGTATCAT
AAAAGTGCATCATATTGCTGGCTGTTGTTCGCATGCAAGATCCGAGGATG
AGCTGCCAACAGCTAGAGCTATCACATCAGAGGGATGTTTTAGGTTGCAG
GCAGCCGGGCCAGTCGACTGTAAGTGTAACAATCAAACAATCAATCAAAA
CACAGCAGCCAATCAACCAACAGCCGGAAGCATTCGAGCGCGAGCCCAAC
CGTGCAGTGTCCGCCATTTCCATGATACGAACAAACCACATTTTTTTTCC
ACGAGAGATACGCCCGCCCCCCCCCCGATGGCGAGCATGTCGAAAATGGC
ATGCTATGGATTTGCAGCAGAGCGTTGTACCTTTATGTTATAGATGGCAG
GGGCAATGTGCAACACAGGCTGTTGTTGGTATGCCCTCGTTGCCTCCGGA
AAAGGATCTCGCGTATAATCTGTTTTGTGGTCGGTCCTCCTCTAGCCTCA
TTTTTATACTAATGCCCATCCCAATAATTAGAGTAGATCGCCATCGACTT
CCCCCACCCTCTCATCACCTGCAACGCCTTACAAGGGCCGTGTCTATAAA
GCCGCATGGATCTTCTTGGCAAGAAGTTGAAGCCCGGCCAAAAACGTTCA
TCAGCAAGGACGTGTCGTCGCTTCTTCCGTGTGTTGAGGGAGGAGGCAGA
GGCGGGCCGGTTTTCTTTCCACGCGAATAAAATTGGCCAAGGAGCATTAT
CGCCGCTCCGGAACAAGCGCGAGGCCCAATTCCGAGTTGTACAATCGATC
ACAGGGAAGAGGGGAGGCCAGATGAAAACGGCAGCTTGAGTCTGGGGGAC
CTCTGATGACACCGTGCTACGTGCCGCCACCGGCTCTCTCTCTTATCGTC
TGTCACAGCGATAAAAATATACACGATTCGCTGCACTGTATTCATAGTCT
CCACCGCCGTGGGCCGTCGGCCGCCGTGTCTACTGCGGTTCTCTATAATA
GCATGCCCCGCAGGTCTGCGAGCCTGTCGCCTCACGCAGACGGGTGGATT
AGGCTGACCACCACGCCCTAGGTAGGTGCGGGAGGAAGGTACTGATTAGG
AATATAAGCTACCAGTTCAGAATGGCCGACTCCGTGTATTTCCGCTTGAA
ACGAATCAGAGCCAGGGTCGAGTCATCGCTTCACAACGACAAAAACATGA
GAGAAAATAACGAAACGACAGAAATTGCAGGAATAAACTAGATTGCCCCA
ACGCGAACAGCTCCTACCTTATCAGATCACAGTACATCACAGCTGTCTGC
CATAACTAAGGAACAATGTTTCTCGCGCTTGCTCTCCCCTCTCCCCTCCC
CCCGAACACCCCACCCGCTTAACTCCCGGTCCTACGGTCTCCCTAGCCGC
AGCTACCGCTTCCCCAGCCCACAACCTTGCCAGCGTCCGAAAAAAATCGC
TCGAGAGCGGAAAAAAGGCACCTGTGGCGAGCGTTGCTGCCGAACTTTAC
CGGAGCACCCCCGGACACCGGAGGACCAGAACCTACCAATTCGGCGAGAA
AAGCCGTTCTCGTTGATTCCCCCGGTGTAGGAGAATCTCTTGGGTTAGAT
GCGGCGGACGTGCACGCTGGGAGAGGGGCAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1216:4771..7053+

>mRNA_S-dermatodea_contig1216.1346.1 ID=mRNA_S-dermatodea_contig1216.1346.1|Name=mRNA_S-dermatodea_contig1216.1346.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig1216:4771..7053+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGGAGACCCTTGGGATGTGTTCGGCTCGGACAGCGACGAGGACCA
AGCGGTCGCAAAGATGGCGGGAGACCCTTGGGATGTGTTCGGCTCGGACA
GCGACGAGGACCAAGCGGTCGCAAAGCCGCAGCTACCGCTTCCCCAGCCC
ACAACCTTGCCAGCGTCCGAAAAAAATCGCTCGAGAGCGGAAAAAAGGCA
CCTGTGGCGAGCGTTGCTGCCGAACTTTACCGGAGCACCCCCGGACACCG
GAGGACCAGAACCTACCAATTCGGCGAGAAAAGCCGTTCTCGTTGATTCC
CCCGGTGTAGGAGAATCTCTTGGGTTAGATGCGGCGGACGTGCACGCTGG
GAGAGGGGCAGGGCCGCAGCTACCGCTTCCCCAGCCCACAACCTTGCCAG
CGTCCGAAAAAAATCGCTCGAGAGCGGAAAAAAGGCACCTGTGGCGAGCG
TTGCTGCCGAACTTTACCGGAGCACCCCCGGACACCGGAGGACCAGAACC
TACCAATTCGGCGAGAAAAGCCGTTCTCGTTGATTCCCCCGGTGTAGGAG
AATCTCTTGGGTTAGATGCGGCGGACGTGCACGCTGGGAGAGGGGCAGGG
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