mRNA_S-dermatodea_contig12150.1340.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12150.1340.1
Unique NamemRNA_S-dermatodea_contig12150.1340.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12150.1340.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.550e-17
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 APLDCPTPSPTLSPAASLGYPDCEGYLYDFQNGNCDSDLNNAECDYDGGDCCECTCSDTGTYXXXXXXXXXLDPNA-CSSPS 243
            AP  C T SPT SPAA   +P+CEGY+Y   +G+CD   NN ECD+DGGDCC CTC  +  Y          DPNA C++PS
Sbjct:  202 APSSCSTDSPTPSPAAGTDWPECEGYIYMIGDGSCDYYNNNEECDWDGGDCCSCTCEGSSYYSCSSYSMDCQDPNANCTTPS 283
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BLAST of mRNA_S-dermatodea_contig12150.1340.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.160e-15
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:   31 TLSPAASLGYPDCEGYLYDFQNGNCDSDLNNAECDYDGGDCCECTCSDTGTYXXXXXXXXXLD------PNACSSPS 243
            T SPAA++GYPDCE YLY++Q+G CD +LN A C YDGGDCC CTC D  ++          D      P+ACS+ S
Sbjct:  133 TPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAACGYDGGDCCRCTCRDYSSWGYSTCGYYGYDCMDPDAPSACSTDS 209
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BLAST of mRNA_S-dermatodea_contig12150.1340.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.950e-14
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 APLDCPTPSPTLSPAASLGYPDCEGYLYDFQNGNCDSDLNNAECDYDGGDCCECTCSDTGTYXXXXXXXXXLDPN 225
            AP  C T SPT SPAA   +P+CEGYL++  +G+CD   NN ECD+DGGDCC CTC  +G Y          DP+
Sbjct:  289 APSSCSTDSPTPSPAAGTDWPECEGYLFEIGDGHCDYYNNNEECDWDGGDCCACTCV-SGYYTCGYYTFDCEDPS 362
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BLAST of mRNA_S-dermatodea_contig12150.1340.1 vs. uniprot
Match: A0A6H5L262_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.100e-7
Identity = 25/45 (55.56%), Postives = 28/45 (62.22%), Query Frame = 1 
Query:   94 NGNCDSDLNNAECDYDGGDCCECTCSDTGTYXXXXXXXXXLDPNA 228
            +GNCD D+N AEC YDGGDCCECTC   G Y         +DP A
Sbjct:   49 DGNCDRDINFAECGYDGGDCCECTCVAEGEYECGAGGYACIDPAA 93
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BLAST of mRNA_S-dermatodea_contig12150.1340.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 9.160e-7
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   58 YPDCEGYLYDFQNGNCDSDLNNAECDYDGGDCCECTCSDTG 180
            YPDCE  +    +  CD D+N AEC +DGGDCCECTC DTG
Sbjct:   59 YPDCEADMALVGDSLCDFDVNVAECGFDGGDCCECTCVDTG 99
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BLAST of mRNA_S-dermatodea_contig12150.1340.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.220e-5
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   64 DCEGYLYDFQNGNCDSDLNNAECDYDGGDCCECTCSDTGTYXXXXXXXXXLDPNA 228
            DC    Y  ++G CD+  NNAEC+YDGGDCC CTC +  TY         +DP+A
Sbjct:   31 DCSPDFY--RDGECDTHNNNAECEYDGGDCCSCTCQND-TYDCGVSGFDCVDPSA 82
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BLAST of mRNA_S-dermatodea_contig12150.1340.1 vs. uniprot
Match: D7G2E3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2E3_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 6.390e-5
Identity = 24/40 (60.00%), Postives = 24/40 (60.00%), Query Frame = 1 
Query:   64 DCEGYL-----YDFQNGNCDSDLNNAECDYDGGDCCECTC 168
            D  GYL     Y   NG CD   N  ECDYDGGDCCECTC
Sbjct:   23 DTTGYLTTCYDYGIGNGECDPRNNKEECDYDGGDCCECTC 62
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BLAST of mRNA_S-dermatodea_contig12150.1340.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 6.540e-5
Identity = 23/45 (51.11%), Postives = 27/45 (60.00%), Query Frame = 1 
Query:   34 LSPAASLGYPDCEGYLYDFQNGNCDSDLNNAECDYDGGDCCECTC 168
            LS  A+  Y     + Y+  +G C    NNAEC YDGGDCCECTC
Sbjct:   18 LSSVAAYSYSSDRCWEYEIGDGFCTQHNNNAECGYDGGDCCECTC 62
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12150.1340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FX77_ECTSI5.550e-1751.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6K0_9PHAE3.160e-1550.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP4_9PHAE1.950e-1450.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L262_9PHAE2.100e-755.56LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FX76_ECTSI9.160e-760.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE2.220e-547.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2E3_ECTSI6.390e-560.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2J7_9PHAE6.540e-551.11LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12150contigS-dermatodea_contig12150:6202..7230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue4.5e-15
Seed eggNOG ortholog2880.D7FX77
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924233.6098917-CDS-S-dermatodea_contig12150:6201..64011622924233.6098917-CDS-S-dermatodea_contig12150:6201..6401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12150 6202..6401 -
1694079112.7398748-CDS-S-dermatodea_contig12150:6201..64011694079112.7398748-CDS-S-dermatodea_contig12150:6201..6401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12150 6202..6401 -
1622924233.6219022-CDS-S-dermatodea_contig12150:7097..72301622924233.6219022-CDS-S-dermatodea_contig12150:7097..7230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12150 7098..7230 -
1694079112.7522454-CDS-S-dermatodea_contig12150:7097..72301694079112.7522454-CDS-S-dermatodea_contig12150:7097..7230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12150 7098..7230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12150.1340.1prot_S-dermatodea_contig12150.1340.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12150 6202..7230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12150.1340.1

>prot_S-dermatodea_contig12150.1340.1 ID=prot_S-dermatodea_contig12150.1340.1|Name=mRNA_S-dermatodea_contig12150.1340.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
APLDCPTPSPTLSPAASLGYPDCEGYLYDFQNGNCDSDLNNAECDYDGGD
CCECTCSDTGTYDCGYNGYDCLDPNACSSPSSSRSASGAASSSDPSTSFL
TQPLSTALIVV
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mRNA from alignment at S-dermatodea_contig12150:6202..7230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12150.1340.1 ID=mRNA_S-dermatodea_contig12150.1340.1|Name=mRNA_S-dermatodea_contig12150.1340.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1029bp|location=Sequence derived from alignment at S-dermatodea_contig12150:6202..7230- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACCCCTCGACTGCCCTACCCCAAGTCCAACGCTGAGCCCAGCTGCCTC
CTTGGGGTACCCGGACTGCGAGGGATACCTTTACGATTTCCAGAACGGCA
ATTGTGACTCCGATTTGAACAACGCTGAGTGCGGTGAGCTGCATATGCCC
AAGAACCACAGCAGGGCCGATTGCAAGGGTTGAAACGAGGTAGCACTTTG
AAATTTCGTACTTGCGGAACCCATATCGTGAAAAATTGCCTTATAACCCG
TTACGCAGGAGTTTGGGGTTTCAAAACTCACATCAATTAATTCTTGCACG
ATCCCGTCTTGCGTGGCAGGTTTCGACGGAGGAGATTGCTGCAGCTGCAC
CTGCCAGGCGTCGTCGTCGTACACATGCGGCCCTTACTATAACTGTCTAG
ACCCTGATGCTGATTGCGTGGACTCAACCTTGACCGAGACCACCGACGAC
GACGCCAGCTTTTGCGCCGAAACCAGTCGTCGAGGGAATGGCTATTGCAG
CTACGACCTCAACACAGAAGCGTGTGGTAAGTCACATCGTCTTCTATCTA
TGTAAATATGATTATTCTCGTAATCCGCTTGCATATTTAGGCGTCCAGGG
TAGAAGTCATGGACAGTGGGTTCGAACAAAAATATACTAGAGGGAATTTT
CCTGAACGCGTTGCTATCCCGTTCACTCTTATCCTGTGCTACTGCAAGTC
AAATCGCCCTATCTGGAGATGCCAAGGAATGGGAGACAAATGCAAGATGC
GCCCACGTTTCCATCTACTTACCATAAACCCTGGAGTCTTCCTTCGCCTG
CACTTTCGCTGTCCGCAACGTTCCGGTAGATTACGACGGCGGGGATTGTT
GCGAATGCACTTGCTCTGATACCGGCACGTACGACTGTGGTTATAATGGC
TACGATTGCCTAGACCCGAACGCATGTAGTTCGCCTAGCAGCAGCAGGAG
TGCATCAGGGGCGGCTTCTTCTAGCGACCCGTCTACCTCCTTTTTGACAC
AGCCACTTTCAACGGCCCTGATCGTCGTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12150:6202..7230-

>mRNA_S-dermatodea_contig12150.1340.1 ID=mRNA_S-dermatodea_contig12150.1340.1|Name=mRNA_S-dermatodea_contig12150.1340.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig12150:6202..7230- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACCCCTCGACTGCCCTACCCCAAGTCCAACGCTGAGCCCAGCTGCCTC
CTTGGGGTACCCGGACTGCGAGGGATACCTTTACGATTTCCAGAACGGCA
ATTGTGACTCCGATTTGAACAACGCTGAGTGCGGCACCCCTCGACTGCCC
TACCCCAAGTCCAACGCTGAGCCCAGCTGCCTCCTTGGGGTACCCGGACT
GCGAGGGATACCTTTACGATTTCCAGAACGGCAATTGTGACTCCGATTTG
AACAACGCTGAGTGCGATTACGACGGCGGGGATTGTTGCGAATGCACTTG
CTCTGATACCGGCACGTACGACTGTGGTTATAATGGCTACGATTGCCTAG
ACCCGAACGCATGTAGTTCGCCTAGCAGCAGCAGGAGTGCATCAGGGGCG
GCTTCTTCTAGCGACCCGTCTACCTCCTTTTTGACACAGCCACTTTCAAC
GGCCCTGATCGTCGTAATTACGACGGCGGGGATTGTTGCGAATGCACTTG
CTCTGATACCGGCACGTACGACTGTGGTTATAATGGCTACGATTGCCTAG
ACCCGAACGCATGTAGTTCGCCTAGCAGCAGCAGGAGTGCATCAGGGGCG
GCTTCTTCTAGCGACCCGTCTACCTCCTTTTTGACACAGCCACTTTCAAC
GGCCCTGATCGTCGTA
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