mRNA_S-dermatodea_contig12149.1337.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12149.1337.1
Unique NamemRNA_S-dermatodea_contig12149.1337.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12149.1337.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.800e-32
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = 2 
Query:    2 SLSAAVNTCVAGFLKGRDEASMSRSRLLCHQVRHNLGVVRMELEWSRLELGLLGGGFCAGGMRSAEVLEELAELIEQVLQGVRGM 256
            SLS+AV+  V GF+KGRDE S+SR+RLLC QVR NL ++RMEL WSRLELGLL GGFCAGGM+SA  LEEL+EL+EQVLQGVRGM
Sbjct:  200 SLSSAVDARVTGFIKGRDETSISRARLLCLQVRQNLEIIRMELGWSRLELGLLFGGFCAGGMQSANALEELSELMEQVLQGVRGM 284
[Close]
BLAST of mRNA_S-dermatodea_contig12149.1337.1 vs. uniprot
Match: A0A6H5JZ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ72_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.110e-15
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:  119 RMELEWSRLELGLLGGGFCAGGMRSAEVLEELAELIEQVLQGVRGM 256
            RMEL WSRLELGLL GGFCAGGM+SA  LEEL+EL+EQVLQGVRGM
Sbjct:    4 RMELGWSRLELGLLFGGFCAGGMQSANALEELSELMEQVLQGVRGM 49
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12149.1337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD61_ECTSI2.800e-3275.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ72_9PHAE1.110e-1584.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12149contigS-dermatodea_contig12149:4097..5967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size260
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12149.1337.1prot_S-dermatodea_contig12149.1337.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12149 4098..5967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924233.3194752-CDS-S-dermatodea_contig12149:4097..41351622924233.3194752-CDS-S-dermatodea_contig12149:4097..4135Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 4098..4135 -
1694079112.5265698-CDS-S-dermatodea_contig12149:4097..41351694079112.5265698-CDS-S-dermatodea_contig12149:4097..4135Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 4098..4135 -
1622924233.3289206-CDS-S-dermatodea_contig12149:5355..54551622924233.3289206-CDS-S-dermatodea_contig12149:5355..5455Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 5356..5455 -
1694079112.5359452-CDS-S-dermatodea_contig12149:5355..54551694079112.5359452-CDS-S-dermatodea_contig12149:5355..5455Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 5356..5455 -
1622924233.3376093-CDS-S-dermatodea_contig12149:5847..59671622924233.3376093-CDS-S-dermatodea_contig12149:5847..5967Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 5848..5967 -
1694079112.5527732-CDS-S-dermatodea_contig12149:5847..59671694079112.5527732-CDS-S-dermatodea_contig12149:5847..5967Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 5848..5967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12149.1337.1

>prot_S-dermatodea_contig12149.1337.1 ID=prot_S-dermatodea_contig12149.1337.1|Name=mRNA_S-dermatodea_contig12149.1337.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
VALCSRQHVRRGFPQGQRRGQHVQVSTPLPPSAAQPRSRPDGAGVVEAGV
RSAGRRVLRRGHEIGRSFGRASRVDRASSPRSARHA
back to top

mRNA from alignment at S-dermatodea_contig12149:4097..5967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12149.1337.1 ID=mRNA_S-dermatodea_contig12149.1337.1|Name=mRNA_S-dermatodea_contig12149.1337.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1871bp|location=Sequence derived from alignment at S-dermatodea_contig12149:4097..5967- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGCTCTCTGCAGCCGTCAACACGTGCGTCGCGGGTTTCCTCAAGGGCA
GAGACGAGGCCAGCATGTCCAGGTCTCGACTCCTCTGCCACCAAGTGCGG
CACAACCTCGGAGTCGTCCGGTGAGGAGCGGGGGAGTTACCGGCGCAAAA
GCTCGACGGGCAGTATGGTACATGAACCTAAACCGGCGCATGAGGGAACG
TGCCCACCAGTTGAATTACACGATCGTTGTGTTCGTGCCCACGAAGGTTT
TGTTGGCGCGTTCACGAGTCGGCTCTGGGCGGCGCGCTGCGTAAGAACCG
AGCCGTTTAAGTATTTTCTCCAACCTCTCGAGCCTCCCCTGGGGCTGGGT
CGCTGCATCCCTCCCAGAAAATTGATCAGGCTGCGCCCAGCCTCCGATCC
CTGCGAGTCCTTGGCTGATTCCTCTCGGGCACCGCTATGTACCATGGAGA
CCCTCACCGCTTTTTTCTCCCGTGGCTGTTCTGTTGCATCGCGTGTGGTT
GGGCGTTGGCAGGATGGAGCTGGAGTGGTCGAGGCTGGAGTTAGGTCTGC
TGGGCGGCGGGTTCTGCGCCGGGGGCATGAGATCGGCAGAAGTTTTGGAA
GAGCTAGCAGAGGTGACATCACGATGCAGCAAGAGTTTGCCGCCACCTTG
TCGACTTTGGACAGTAATGGTTGACATTTAGGCAGCCAATCGGAAGACTT
TCCGGGCGCATCGGTTGATCATCGTGATTGATAACATACAAAACGCGCGC
AGAGTCATGCCTGACGCTTCGCCGGGGTACGTCCTGCTGAGCCACGTGTT
GCACTTGGGGAGTCGCCTGGACCATCTTTTACTGGGAGTGTTTTCTTTCG
GGCGGCCGATGAAATACATCATGTCAGTTTTGTGTACAACAAAGTCCACC
CGGGTCCCGTCCTGTCCCGATGAGTTGTGCAGTGTACTCTTTCTGTGTTC
TGTTTCTTTACCAAAATATTTACATCGTTTTTGCCCAGGTCCGCCGAGTT
TGGCCACATTTGGCCACACCGCCATCCTGGTATGTAGTACGCGCCCCCTA
CAAAAATAGCACTCACCCAATGCTATAAGATCGAGTAAGGGTTAGGGTTG
GGGTGCGGATTAGAGCCTTGCGAAGGAAGAAACAAGAAAGGCCTAAATGT
CAACCATTGTCCAAATGCGACTATTATTACGGAGGTGCACAGAGTAATCA
GGACCAAATGTGCCAAGACGTACGCCCAACATAATGAACCATAAATCAAT
GTGGTGTGGTCTGTTTGGCCTTACAAGTTCTGCAATGTTCCGGCCTGAAA
GGTGAAATAAAAAAAGTTAACAAAAAATGTCGAACGTGTTTGGGCCAACG
TTTGAAAAGGCAAGACTTGAATACGCTGTCATATTCAGCTGATATTTGGT
CCTGATTACTGTGTACGTCTGTACTGGGTGGTAAACTGCCCTCATGGTAC
TATCCCCCGAGACCCGAGCTCTTGCTGCAAAAGTGGTACTCTCGCAGCTC
AGAGAGTACGGAGGTTTTTACCCCACCCGTAGGATGGGAGGAAGTGGTGC
TGCCACATTCTTGCTTGCTCGCCGATTGCTGCACAGCCTTCCGATATCGA
CTTGTGGAACACTCCAATCAACCCATGGCATACCGTTTAGCCTCGCAAAC
GCAAGGATGATGGCTAGAAGCTGGTATCATCCTTGTGAAACGCAGCCTGG
CCGGTGAAAACCCGGCATATCGCTCCGTCCCGGAATTTTTGAGACGCGTG
ATCTTTGTCCGTCTGGATACGACATGCGTTTAACATAAGCACCCCCCCCC
CCACCCCCACGCCCCCTCCCCCCCCCGTACAGTTGATCGAGCAAGTTCTC
CAAGGAGTGCGAGGCATGCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12149:4097..5967-

>mRNA_S-dermatodea_contig12149.1337.1 ID=mRNA_S-dermatodea_contig12149.1337.1|Name=mRNA_S-dermatodea_contig12149.1337.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig12149:4097..5967- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGCTCTCTGCAGCCGTCAACACGTGCGTCGCGGGTTTCCTCAAGGGCA
GAGACGAGGCCAGCATGTCCAGGTCTCGACTCCTCTGCCACCAAGTGCGG
CACAACCTCGGAGTCGTCCGGTCGCTCTCTGCAGCCGTCAACACGTGCGT
CGCGGGTTTCCTCAAGGGCAGAGACGAGGCCAGCATGTCCAGGTCTCGAC
TCCTCTGCCACCAAGTGCGGCACAACCTCGGAGTCGTCCGGATGGAGCTG
GAGTGGTCGAGGCTGGAGTTAGGTCTGCTGGGCGGCGGGTTCTGCGCCGG
GGGCATGAGATCGGCAGAAGTTTTGGAAGAGCTAGCAGAGGATGGAGCTG
GAGTGGTCGAGGCTGGAGTTAGGTCTGCTGGGCGGCGGGTTCTGCGCCGG
GGGCATGAGATCGGCAGAAGTTTTGGAAGAGCTAGCAGAGTTGATCGAGC
AAGTTCTCCAAGGAGTGCGAGGCATGCGTTGATCGAGCAAGTTCTCCAAG
GAGTGCGAGGCATGCG
back to top