mRNA_S-dermatodea_contig12114.1319.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12114.1319.1
Unique NamemRNA_S-dermatodea_contig12114.1319.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12114.1319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12114contigS-dermatodea_contig12114:2007..2999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size700
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12114.1319.1prot_S-dermatodea_contig12114.1319.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12114 2282..2999 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.087683-UTR-S-dermatodea_contig12114:2006..22811622924232.087683-UTR-S-dermatodea_contig12114:2006..2281Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12114 2007..2281 +
1694079111.783279-UTR-S-dermatodea_contig12114:2006..22811694079111.783279-UTR-S-dermatodea_contig12114:2006..2281Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12114 2007..2281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.0988038-CDS-S-dermatodea_contig12114:2281..23631622924232.0988038-CDS-S-dermatodea_contig12114:2281..2363Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12114 2282..2363 +
1694079111.7925582-CDS-S-dermatodea_contig12114:2281..23631694079111.7925582-CDS-S-dermatodea_contig12114:2281..2363Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12114 2282..2363 +
1622924232.107401-CDS-S-dermatodea_contig12114:2658..29991622924232.107401-CDS-S-dermatodea_contig12114:2658..2999Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12114 2659..2999 +
1694079111.8002396-CDS-S-dermatodea_contig12114:2658..29991694079111.8002396-CDS-S-dermatodea_contig12114:2658..2999Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12114 2659..2999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12114.1319.1

>prot_S-dermatodea_contig12114.1319.1 ID=prot_S-dermatodea_contig12114.1319.1|Name=mRNA_S-dermatodea_contig12114.1319.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=141bp
MLLRPRLTLAVAWTAAVHFGRPEALVPDISPRVPNRASASSSSSCQLQLQ
GAWRSCLACPPISEQRHCCAAQLTEASAHQQEHYHRSRSRRNSIRDFPRI
TSSKPSPIPSAWGPRTVSTGAISRREPGVLAMARAGGGVDE
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mRNA from alignment at S-dermatodea_contig12114:2007..2999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12114.1319.1 ID=mRNA_S-dermatodea_contig12114.1319.1|Name=mRNA_S-dermatodea_contig12114.1319.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=993bp|location=Sequence derived from alignment at S-dermatodea_contig12114:2007..2999+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACTGTGTGCCACAGCTTCCCCGCCGCCGCCACCGCTGTCGCCTTCGCCA
TCTCGACGCAAAGTACATGCTAAAGGACCAGTACGTAAGTCACTGAGGAA
CGCTTAACTCGCGATCGCAACACGCACGATTACTTCGAGAGGCTTTCGTC
TCTGCTGACGCACATAAATAGCGTTGTTTCGTACACTCGGCAACTCGCGG
CACCTTCGCCTTGTTCACGCTATCCTAGAGAGCCCAGCAGCAGAGCAGTG
GTATAGCAGTGACTAAGAGCAAGGGATGCTGCTCCGCCCGCGCTTGACCC
TCGCCGTCGCCTGGACTGCGGCAGTTCACTTCGGTCGCCCGGAGGCTCTC
GTACCCGGTGAGCAAGCTGTAGCAAGCGGGATATCTCGGCGTTCGGGATG
GAAATAACTGATACTGGAAACATGAATTTTGTTCCACAGACCTTGCCTTC
TCCTCTTATCATACAAGTATGGTCAAAAGGCTAAAGGGGCTGTTTGCAAT
TTCACACCACAATACATGCATGCACAGATACATGAATGGCCGCTGCTCTG
CCGTGCACGTGGCATCGCTGTCTGCGTGTCGTGACAATGGCAGAACCTCA
GCACCCACCCCATTCCCCTGCTCCCTCCCCGCCTCCCTACCCAATCCTAT
AGACATTTCCCCCCGAGTGCCTAATAGAGCATCAGCATCATCATCATCGT
CCTGCCAGCTCCAGCTCCAAGGCGCCTGGCGCAGTTGCCTGGCCTGTCCT
CCAATCTCAGAACAGCGCCACTGCTGCGCGGCCCAGCTAACTGAGGCATC
AGCCCACCAGCAAGAACACTACCATCGCAGCCGCAGCCGCCGCAACAGTA
TCCGCGATTTCCCCCGAATCACCTCTTCCAAGCCCTCTCCGATCCCATCC
GCTTGGGGGCCGCGTACCGTCTCCACGGGGGCCATTTCACGACGAGAGCC
TGGCGTTTTGGCCATGGCGAGGGCGGGGGGTGGGGTTGATGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12114:2007..2999+

>mRNA_S-dermatodea_contig12114.1319.1 ID=mRNA_S-dermatodea_contig12114.1319.1|Name=mRNA_S-dermatodea_contig12114.1319.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at S-dermatodea_contig12114:2007..2999+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGCTCCGCCCGCGCTTGACCCTCGCCGTCGCCTGGACTGCGGCAGT
TCACTTCGGTCGCCCGGAGGCTCTCGTACCCGATGCTGCTCCGCCCGCGC
TTGACCCTCGCCGTCGCCTGGACTGCGGCAGTTCACTTCGGTCGCCCGGA
GGCTCTCGTACCCGACATTTCCCCCCGAGTGCCTAATAGAGCATCAGCAT
CATCATCATCGTCCTGCCAGCTCCAGCTCCAAGGCGCCTGGCGCAGTTGC
CTGGCCTGTCCTCCAATCTCAGAACAGCGCCACTGCTGCGCGGCCCAGCT
AACTGAGGCATCAGCCCACCAGCAAGAACACTACCATCGCAGCCGCAGCC
GCCGCAACAGTATCCGCGATTTCCCCCGAATCACCTCTTCCAAGCCCTCT
CCGATCCCATCCGCTTGGGGGCCGCGTACCGTCTCCACGGGGGCCATTTC
ACGACGAGAGCCTGGCGTTTTGGCCATGGCGAGGGCGGGGGGTGGGGTTG
ATGAAACATTTCCCCCCGAGTGCCTAATAGAGCATCAGCATCATCATCAT
CGTCCTGCCAGCTCCAGCTCCAAGGCGCCTGGCGCAGTTGCCTGGCCTGT
CCTCCAATCTCAGAACAGCGCCACTGCTGCGCGGCCCAGCTAACTGAGGC
ATCAGCCCACCAGCAAGAACACTACCATCGCAGCCGCAGCCGCCGCAACA
GTATCCGCGATTTCCCCCGAATCACCTCTTCCAAGCCCTCTCCGATCCCA
TCCGCTTGGGGGCCGCGTACCGTCTCCACGGGGGCCATTTCACGACGAGA
GCCTGGCGTTTTGGCCATGGCGAGGGCGGGGGGTGGGGTTGATGAA
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