mRNA_S-dermatodea_contig1209.1300.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1209.1300.1
Unique NamemRNA_S-dermatodea_contig1209.1300.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1209.1300.1 vs. uniprot
Match: D8LLD2_ECTSI (UBX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD2_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.050e-41
Identity = 85/124 (68.55%), Postives = 99/124 (79.84%), Query Frame = 2 
Query:   20 AELVGPWGKGSPEDELRLAMEASLKDVEEGVGAGAEEVPKEPDAGEGVTQVRFRLPSG-TIARRFWMRDRVSVLYQYVRTTVEEASSRPFDLLSGHPPASLSDSKASTLEGANLSNTAIMVRWL 388
            A LVGPWG+G+PEDELR A         EGV   + EV +EPDAG GVTQV+FRL  G TIARRFW++DRVS+L+Q+VRTT EEA++RPFDLLSGHPP+SL  SK STLE ANLSN+AIMVRWL
Sbjct:  559 AGLVGPWGRGTPEDELRAAGAG------EGVLGESVEVLQEPDAGNGVTQVQFRLAGGGTIARRFWLKDRVSLLFQFVRTTGEEAATRPFDLLSGHPPSSLLGSKVSTLEAANLSNSAIMVRWL 676
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BLAST of mRNA_S-dermatodea_contig1209.1300.1 vs. uniprot
Match: A0A6H5JRV7_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV7_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.300e-41
Identity = 86/134 (64.18%), Postives = 100/134 (74.63%), Query Frame = 2 
Query:    2 VTGAGAAELVGPWGKGSPEDELRLAMEASLKDVEEGVGAGA----EEVPKEPDAGEGVTQVRFRLPSG-TIARRFWMRDRVSVLYQYVRTTVEEASSRPFDLLSGHPPASLSDSKASTLEGANLSNTAIMVRWL 388
            +  A  A LVGPWG+G+PEDELR           EG G G      +VP+EPDAG GVTQV+FRL  G TIARRFW+ DRVS+L+Q+VRTT EEA++RPFDLLSGHPP+SL  SK STLE ANLSN+AIMVRWL
Sbjct:  733 IGAAAGAGLVGPWGRGTPEDELRA----------EGAGQGVLGEPVDVPQEPDAGNGVTQVQFRLAGGGTIARRFWLNDRVSLLFQFVRTTGEEAATRPFDLLSGHPPSSLLGSKVSTLEAANLSNSAIMVRWL 856
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BLAST of mRNA_S-dermatodea_contig1209.1300.1 vs. uniprot
Match: A0A6H5L1S0_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1S0_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.890e-8
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 2 
Query:  128 EVPKEPDAGEGVTQVRFRLPSGT-IARRFWMRDRVSVLYQYVRTTVEEASSRPFDLLSGHPPASLSDSKASTLEGANLSNTAIMVRW 385
            E P   D  E ++ VRF+ P+G  + R+F     V  L+ +VRT +E A ++PFD+ +  PP S+   + S++E A LSN+ ++V W
Sbjct:   20 EDPPGDDCAEKIS-VRFQFPTGARVLRKFRKSSDVRQLFLFVRTELEGAKAKPFDVRTVRPPCSVRSKEGSSIEEAGLSNSTVVVAW 105
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BLAST of mRNA_S-dermatodea_contig1209.1300.1 vs. uniprot
Match: D7FS95_ECTSI (UBX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS95_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.610e-7
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 2 
Query:  128 EVPKEPDAGEGVTQVRFRLPSGT-IARRFWMRDRVSVLYQYVRTTVEEASSRPFDLLSGHPPASLSDSKASTLEGANLSNTAIMVRW 385
            E P   D  E ++ VRF+ P+G  + RRF     V  L+ +VRT +E A ++PFD+ +  PP S+   + S++E A LSN+ ++V W
Sbjct:  522 EDPPGDDCAEKIS-VRFQFPTGARVLRRFRKSSDVRQLFLFVRTELEGAKAKPFDVRTVRPPCSVRSKEGSSIEEAGLSNSTVVVAW 607
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1209.1300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LLD2_ECTSI1.050e-4168.55UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JRV7_9PHAE1.300e-4164.18UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L1S0_9PHAE3.890e-836.78UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FS95_ECTSI3.610e-737.93UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1209contigS-dermatodea_contig1209:17851..21614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue2.3e-29
Seed eggNOG ortholog2880.D8LLD2
Preferred nameUBXN7
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0012505,GO:0016020,GO:0016604,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0030674,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032182,GO:0032991,GO:0034098,GO:0036211,GO:0042175,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0051603,GO:0060090,GO:0070013,GO:0071704,GO:0098796,GO:0098827,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ubiquitin binding
EggNOG OGsKOG1364@1,KOG1364@2759
EC1.1.1.8
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size685
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1209.1300.1prot_S-dermatodea_contig1209.1300.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1209 18145..21538 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.3359053-UTR-S-dermatodea_contig1209:17850..181441622924230.3359053-UTR-S-dermatodea_contig1209:17850..18144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1209 17851..18144 -
1694079110.4610395-UTR-S-dermatodea_contig1209:17850..181441694079110.4610395-UTR-S-dermatodea_contig1209:17850..18144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1209 17851..18144 -
1622924230.3867068-UTR-S-dermatodea_contig1209:21538..216141622924230.3867068-UTR-S-dermatodea_contig1209:21538..21614Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1209 21539..21614 -
1694079110.4974895-UTR-S-dermatodea_contig1209:21538..216141694079110.4974895-UTR-S-dermatodea_contig1209:21538..21614Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1209 21539..21614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.351037-CDS-S-dermatodea_contig1209:18144..182761622924230.351037-CDS-S-dermatodea_contig1209:18144..18276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1209 18145..18276 -
1694079110.4731562-CDS-S-dermatodea_contig1209:18144..182761694079110.4731562-CDS-S-dermatodea_contig1209:18144..18276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1209 18145..18276 -
1622924230.363867-CDS-S-dermatodea_contig1209:20653..207521622924230.363867-CDS-S-dermatodea_contig1209:20653..20752Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1209 20654..20752 -
1694079110.4811807-CDS-S-dermatodea_contig1209:20653..207521694079110.4811807-CDS-S-dermatodea_contig1209:20653..20752Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1209 20654..20752 -
1622924230.376352-CDS-S-dermatodea_contig1209:21454..215381622924230.376352-CDS-S-dermatodea_contig1209:21454..21538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1209 21455..21538 -
1694079110.4895756-CDS-S-dermatodea_contig1209:21454..215381694079110.4895756-CDS-S-dermatodea_contig1209:21454..21538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1209 21455..21538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1209.1300.1

>prot_S-dermatodea_contig1209.1300.1 ID=prot_S-dermatodea_contig1209.1300.1|Name=mRNA_S-dermatodea_contig1209.1300.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MEASLKDVEEGVGAGAEEVPKEPDAGEGVTQVRFRLPSGTIARRFWMRDR
VSVLYQYVRTTVEEASSRPFDLLSGHPPASLSDSKASTLEGANLSNTAIM
VRWL*
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mRNA from alignment at S-dermatodea_contig1209:17851..21614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1209.1300.1 ID=mRNA_S-dermatodea_contig1209.1300.1|Name=mRNA_S-dermatodea_contig1209.1300.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3764bp|location=Sequence derived from alignment at S-dermatodea_contig1209:17851..21614- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGACTGGGGCTGGTGCGGCGGAACTCGTCGGGCCGTGGGGGAAGGGGT
CGCCAGAAGACGAGTTGCGATTGGCGATGGAGGCGTCATTGAAGGACGTT
GAGGAGGGAGTCGGGGCGGGGGCGGAAGAGGTGCCCAAGGAGCCTGATGC
TGGCGAAGGGGTACGTTTTTTTTTTGTGGGGGGTGGGGGGTGGAGGGTGT
TGATATCGAGGAGGTGGTTAATTGCGTTGTTGATTTGGGGTTCGGCTTGG
GTTTGCATACACGTCTAGACGAGTCCCTTGTATGTTCGTACGCTTCGACT
CTGGCCAGGGGTAGGGAGTAAAAGGCTAACGCCTTCGGCCGCGGTGTGGA
AAACCTCTCCTAGTCCGAGGGTGCCATGATGCGTTTTTTGCGGTTACCGG
GGTCGTTTTAAAGTATTATAGGAAAGGGTTTTATGTCGAGAGGGTGAAAC
AAACGGCAGGCTGACGAGCGTGTTATTTCGCGTTAAATGCGAATTGTGAC
TTTGCCCCCCCCCCGGAAAGCTCTTGGGGTGTGTTTTGGGCGGTCTGCAC
GGTCGTCCGACGACGATGGGGATGATCGTGTTGAGGTTCGAGCACCCGTG
GTGTGGGTTAGGGGCGGCAGTCCGCACATGTCACGATGACAAAATCGCCC
GACTGCTGGGTTGTAACGGATGTGCTCGAGAGAATCGCGCGGGTGTATAT
ATACTCGCATTGCGCACCGTGGTGACTGGGCCGGCAAAAGCCAAGAGAAC
CCCCTCCTTGAGAAGACGACAAGCATCGTCCCAACCTGTTTTGCAATGTG
ACACACTACAGACACTACAGTATGCTTCTTGTATGCCCGTTTTTACCGCT
TTCATCGCATAGGTCACCCAGGTTCGATTCCGCCTGCCCAGCGGGACCAT
CGCGCGTCGCTTCTGGATGAGAGACCGAGTGTCCGTGCTGTACCAGTACG
TGCGAACGACGGTGAGCGCGCGCGCGCCGGCTGCCCGCGCTCGTGAGGCG
GGCAGCTTTAACCCTCTTGGGATCGATGGCCGTTTCGGGCGAGGGGCGCT
CTGCCCGCGCGTTTGTGTCTCGCATCGCATAGTAGCCGAACGGTGGCCAC
TATGTACTCATCGCCACCGTGGAGGTCTAGAATTGATCGTGAGCCTGACA
CGCTTTTAGCTTGCATCCACGGCGATGAATACAATAGGGTCGATTGATTG
ATTGATTCGTTGATTGGTTGGTTTGCACACGTATAGCCGATCGGCTTAAT
CCCACCCGACTTGTGGTGCTATATATATAATGTATAGTATAGCAAAGAGT
TGAGGAGAAAATAACTAATCAGAACCCTACTTGTTCAACACACAAATACC
GCCCCTGCTACTTTCTACGGTGCAAGAGAACAAGTTAGTAACCCCAGATA
TAGGAAAACGCCACAGCGTCGGCTAATAACGAACTTACTCGGAAAAGGGA
TAATAACAATGGCGGCATCTTGACGGCCACAAATACGGAGAAAGCACCAG
TGGCACGCAGTAATTACGTTGTGATTGGCTTATTTGTCACGCTTACAACC
GACCGGCCCGGCCCGGCCCGGCCCAAGCCGTTACTGGTTGCCGATCCCGC
TCGTGGTCAAAGAAGACACGACGAAAGAAAGCAGACCGTATTTTAACAAA
TCCCCTTAACCGTTTTGGGACTGAGCCTGTTTTCGGGGTTAGGCCATCTG
TGAGTAGTATATAGTAGCCACCGTTCGGGTACTGTACCTGTTCCATGTGA
GGTATAGTGCGGGCAGATAGCTATATCATATAGTATATAGTAGTCACCGT
TCGGGCACTGTACCTGTTCCATGTGAGGTATAGTGCGGGCAGATGGCTAT
ATAATATATAGTATCTAGTAGCCACCGTTCACGTACTGTCTGTACCTGTT
CCATGTGAGGTATAGTGCGGGCAGATGACCTATCACCGAAAACAAGCTCG
ATCCCAAAAGGGTTAAGCCGAAAAAAAAAGGAGTCCAGGCACAAAACTGG
TAAAAACGTAAAAAAAACGCCCCACCGCATGAAACGCTACAACTACAACT
CATCTGGAATCCATTAGATACGCTGGGAAGAAAACCGGGTCCTACGCTGG
CCACAGGCCAACTTAGAACTACATGTTATAGGTTTTTTTGTAGTCTGTAG
TCTCTCACTCGCTTCGTTGGCCGGATTTCAGCTCAAAGCAAATTGATCGT
GATGACGTGTGCGATTTGCGGGCCGGCTGGTGCTTTCAATGGCAAACTCA
TACCCGATGCCCATCCAGGACAACATCACGCCTGTAGTATCAGGCTGTGG
GCAGGAATGGATATTGTGTCTAATTTTGCCGTCAGCCCCCCTCCCGCCCC
CCCCCCGTGCACAACGCGCTGCGAGTGATAGTTTAGCTTCTCCGCTTAGC
AACGCGGTTTGTTCGCTAATTCGGAGGACCAATTCTTCACAAGCTTGAAA
GGTTTTGCCACCTAATTGGCCATAATATCGTATATATTCTTGGGGCAGAC
CTAATTTTTTTTTTATGGTGTGTGCTGTCGGCGTATTTATGGTTGGGACA
TTTGGCCCTCATTCGTGTGTACCTCTGCATTAGTGCCGCCTGGCGCGTGG
AGGATTGTAGCCTTGAATTTCGTCCCGGCTTTATCCCACGACTCTCCTGG
AGAACCCCCAGTAGTAACGTTCAAAACGTACGGCGAGCGTTGGGGCTCAT
ACTTTTGTTTTTGAAGTGAGGGATAGTAGAGGTAAATTAACCCTAAGGAG
GTTTTATGTCATGTGTGATGCTTATGATATAGTTGCGGAGTTATATCTCC
GTCTGGACTATGTTGTGTTTGAAACGATCCGGGGAAAGTTTCGATGTATG
AATAGTACAAAGCAGCTGGTCGTTGTAGAAATGTCACTGTCTGGGTGGAG
GTGGGGCACTACAAAATAATAAAAAGGTAACTCTGGAAAATTGTGTCTTG
TCTCTAAAAAATACCTTGGTTTCAAAGACAGAGCGCGCGCTGGGGTCTCA
TCTTTTTGGAAACGGAAGATTATTCAAGCTGTTAAACACACCTATGGAGG
CTTACGTTGCGTATGATGCTATGGTTTCATCTCATGTATTATGTCATATG
CCCCTCCCCCCTTCCCATGTAGACAAGATAATAGCAACAAAATTGCGCCA
CCTTTGGTAAAGTAAGAAAGAACGATTGGCCATCGGCGATCGATCCTGTG
GGAGCAATGCTCCATCCTATCGAGGACGGACGCATGGCCAGTGGCCTAAT
AGCTGAGGCATGCAAAACATGAGTACACCCCCCCCCCTACCTCCGTTGCC
CCCGCTGAAACGCTGGGCATTCGCTTGGCGTCTTTCAGGTAGAAGAGGCT
TCCTCCAGACCGTTCGACCTTCTGTCGGGGCACCCCCCCGCGTCGCTGTC
CGACAGCAAGGCCTCCACGCTGGAGGGGGCCAACCTCAGCAACACGGCCA
TCATGGTGCGCTGGTTGTGAGGAAACTTATAGGAGGGCGGGTTGCCGCCC
GGCGGCCACCGAGCTTCTCCCCAGCTTCCGATCGTTTTTTCTTTCTTTTT
TTTACAGAGGCGACCGTTGATGTGTGCGTGTGTGTTTTCCGCGGCTTTCG
TTTTGTCGTTCCCAAAATGCTTTATGCGTAAGGGGGGTCAGAGGAGATAA
ACTTGGCGGAGGAAGTCTGGGTCCGTTGGCTCACAGCGACCCGGGGTCCC
GATGGATCGAGACCGAAATGTTTGGTGGATTCGTGACGGCCGGAGGGGAA
AAAGCGCGCGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1209:17851..21614-

>mRNA_S-dermatodea_contig1209.1300.1 ID=mRNA_S-dermatodea_contig1209.1300.1|Name=mRNA_S-dermatodea_contig1209.1300.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig1209:17851..21614- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGCGTCATTGAAGGACGTTGAGGAGGGAGTCGGGGCGGGGGCGGA
AGAGGTGCCCAAGGAGCCTGATGCTGGCGAAGGGATGGAGGCGTCATTGA
AGGACGTTGAGGAGGGAGTCGGGGCGGGGGCGGAAGAGGTGCCCAAGGAG
CCTGATGCTGGCGAAGGGGTCACCCAGGTTCGATTCCGCCTGCCCAGCGG
GACCATCGCGCGTCGCTTCTGGATGAGAGACCGAGTGTCCGTGCTGTACC
AGTACGTGCGAACGACGGTCACCCAGGTTCGATTCCGCCTGCCCAGCGGG
ACCATCGCGCGTCGCTTCTGGATGAGAGACCGAGTGTCCGTGCTGTACCA
GTACGTGCGAACGACGGTAGAAGAGGCTTCCTCCAGACCGTTCGACCTTC
TGTCGGGGCACCCCCCCGCGTCGCTGTCCGACAGCAAGGCCTCCACGCTG
GAGGGGGCCAACCTCAGCAACACGGCCATCATGGTGCGCTGGTTGTGAGT
AGAAGAGGCTTCCTCCAGACCGTTCGACCTTCTGTCGGGGCACCCCCCCG
CGTCGCTGTCCGACAGCAAGGCCTCCACGCTGGAGGGGGCCAACCTCAGC
AACACGGCCATCATGGTGCGCTGGTTGTGA
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